BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_22418
(164 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02380.F PTA.sd.13971.singlet 325 6e-89
PTA.sd.8095.C1 nseq=60 64 3e-10
PTA.sd.7578.C1 nseq=26 32 1.2
PTA.sd.14384.C1 nseq=2 32 1.2
PTA.sd.9147.C1 nseq=3 30 4.6
PTA.sd.421.C1 nseq=2 30 4.6
PTA.sd.2585.C1 nseq=2 30 4.6
PTA.sd.1824.C1 nseq=6 30 4.6
PTA.sd.1776.C1 nseq=6 30 4.6
PTA.sd.15387.C1 nseq=7 30 4.6
PTA.sd.13881.C1 nseq=10 30 4.6
At3g58920.F 30 4.6
At1g35330.F 30 4.6
>At5g02380.F PTA.sd.13971.singlet
Length = 234
Score = 325 bits (164), Expect = 6e-89
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 1 caaaaggtaccctgacttggagaacaccgccaccgagactcttgtcctcggtgttgctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 caaaaggtaccctgacttggagaacaccgccaccgagactcttgtcctcggtgttgctcc 128
Query: 61 ggcgatgaactctcagtacgaggcttccggcgagactttcgttgccgagaatgatgcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ggcgatgaactctcagtacgaggcttccggcgagactttcgttgccgagaatgatgcttg 188
Query: 121 caaatgcggatctgactgcaagtgcaacccttgtacctgcaaat 164
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 caaatgcggatctgactgcaagtgcaacccttgtacctgcaaat 232
>PTA.sd.8095.C1 nseq=60
Length = 612
Score = 63.9 bits (32), Expect = 3e-10
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 35 gagactcttgtcctcggtgttgctccggcgatgaactctcagtacgaggcttccggcgag 94
|||||| ||||| | || ||||| ||||||||||| ||||||||||||||| || |||
Sbjct: 171 gagacttttgtcttgggcgttgcaccggcgatgaagaatcagtacgaggcttcaggggag 230
Query: 95 actttcgttgccgagaatgatgcttgcaaatgcggatctgactgcaagtgcaacccttgt 154
| | | || ||||| ||||||||||| || ||||||||||||||||| | |||||
Sbjct: 231 agtaacaacgctgagaacgatgcttgcaagtgtggatctgactgcaagtgtgatccttgc 290
Query: 155 acctgcaa 162
||||||||
Sbjct: 291 acctgcaa 298
Score = 32.2 bits (16), Expect = 1.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 1 caaaaggtaccctgacttgg 20
||||| ||||||||||||||
Sbjct: 125 caaaatgtaccctgacttgg 144
>PTA.sd.7578.C1 nseq=26
Length = 860
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 13 tgacttggagaacacc 28
||||||||||||||||
Sbjct: 201 tgacttggagaacacc 216
>PTA.sd.14384.C1 nseq=2
Length = 3666
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 6 ggtaccctgacttgga 21
||||||||||||||||
Sbjct: 2562 ggtaccctgacttgga 2547
>PTA.sd.9147.C1 nseq=3
Length = 3048
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 21 agaacaccgccaccg 35
|||||||||||||||
Sbjct: 113 agaacaccgccaccg 99
>PTA.sd.421.C1 nseq=2
Length = 862
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 75 agtacgaggcttccg 89
|||||||||||||||
Sbjct: 544 agtacgaggcttccg 530
>PTA.sd.2585.C1 nseq=2
Length = 607
Score = 30.2 bits (15), Expect = 4.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 52 tgttgctccggcgatgaac 70
|||||| ||||||||||||
Sbjct: 384 tgttgcaccggcgatgaac 402
>PTA.sd.1824.C1 nseq=6
Length = 1655
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 cgccaccgagactct 42
|||||||||||||||
Sbjct: 736 cgccaccgagactct 750
>PTA.sd.1776.C1 nseq=6
Length = 1471
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 112 tgatgcttgcaaatg 126
|||||||||||||||
Sbjct: 846 tgatgcttgcaaatg 832
>PTA.sd.15387.C1 nseq=7
Length = 646
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 63 cgatgaactctcagt 77
|||||||||||||||
Sbjct: 203 cgatgaactctcagt 189
>PTA.sd.13881.C1 nseq=10
Length = 1734
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 ggcgatgaactctca 75
|||||||||||||||
Sbjct: 1099 ggcgatgaactctca 1113
>At3g58920.F
Length = 1413
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 139 caagtgcaacccttg 153
|||||||||||||||
Sbjct: 632 caagtgcaacccttg 646
>At1g35330.F
Length = 984
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 12 ctgacttggagaaca 26
|||||||||||||||
Sbjct: 74 ctgacttggagaaca 60
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 164
length of database: 39,126,732
effective HSP length: 16
effective length of query: 148
effective length of database: 38,700,540
effective search space: 5727679920
effective search space used: 5727679920
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)