BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_22342
(167 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g17360.F 331 9e-91
At3g63460.F PTA.sd.11051.singlet 34 0.30
PTA.sd.15718.C1 nseq=4 34 0.30
PTA.sd.9900.C1 nseq=8 32 1.2
PTA.sd.71.C1 nseq=4 32 1.2
PTA.sd.3781.C1 nseq=7 32 1.2
PTA.sd.10552.C1 nseq=8 32 1.2
PTA.sd.10551.C1 nseq=7 32 1.2
At3g09530.F 32 1.2
PTA.sd.9967.C1 nseq=113 30 4.6
PTA.sd.9966.C1 nseq=11 30 4.6
PTA.sd.9958.C1 nseq=8 30 4.6
PTA.sd.8478.C1 nseq=4 30 4.6
PTA.sd.8044.C1 nseq=13 30 4.6
PTA.sd.7134.C1 nseq=10 30 4.6
>At3g17360.F
Length = 6027
Score = 331 bits (167), Expect = 9e-91
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 1 gatacagcgtcatttaaacttgctgatactgattataccaagagactggaaaacgctcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5860 gatacagcgtcatttaaacttgctgatactgattataccaagagactggaaaacgctcag 5919
Query: 61 aagcttctttcccatgctaataacgaattggcaaagtatcgcaaaacgagcaataaccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5920 aagcttctttcccatgctaataacgaattggcaaagtatcgcaaaacgagcaataaccat 5979
Query: 121 ccatctacaagaactcaaggacagagctctggtacaagatatcggta 167
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5980 ccatctacaagaactcaaggacagagctctggtacaagatatcggta 6026
>At3g63460.F PTA.sd.11051.singlet
Length = 3294
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 20 ttgctgatactgattat 36
|||||||||||||||||
Sbjct: 2457 ttgctgatactgattat 2441
>PTA.sd.15718.C1 nseq=4
Length = 2857
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 65 ttctttcccatgctaat 81
|||||||||||||||||
Sbjct: 1196 ttctttcccatgctaat 1180
>PTA.sd.9900.C1 nseq=8
Length = 1306
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 30 tgattataccaagaga 45
||||||||||||||||
Sbjct: 555 tgattataccaagaga 540
>PTA.sd.71.C1 nseq=4
Length = 1647
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 58 cagaagcttctttccc 73
||||||||||||||||
Sbjct: 1382 cagaagcttctttccc 1367
>PTA.sd.3781.C1 nseq=7
Length = 2725
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 19 cttgctgatactgatt 34
||||||||||||||||
Sbjct: 1635 cttgctgatactgatt 1650
>PTA.sd.10552.C1 nseq=8
Length = 1690
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 51 aaacgctcagaagctt 66
||||||||||||||||
Sbjct: 1685 aaacgctcagaagctt 1670
>PTA.sd.10551.C1 nseq=7
Length = 1393
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 51 aaacgctcagaagctt 66
||||||||||||||||
Sbjct: 1353 aaacgctcagaagctt 1368
>At3g09530.F
Length = 1914
Score = 32.2 bits (16), Expect = 1.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 129 aagaactcaaggacagagct 148
|||||||| |||||||||||
Sbjct: 490 aagaactctaggacagagct 509
>PTA.sd.9967.C1 nseq=113
Length = 1333
Score = 30.2 bits (15), Expect = 4.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 125 ctacaagaactcaaggaca 143
||||| |||||||||||||
Sbjct: 1127 ctacaggaactcaaggaca 1145
>PTA.sd.9966.C1 nseq=11
Length = 1366
Score = 30.2 bits (15), Expect = 4.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 125 ctacaagaactcaaggaca 143
||||| |||||||||||||
Sbjct: 1012 ctacaggaactcaaggaca 1030
>PTA.sd.9958.C1 nseq=8
Length = 1910
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 61 aagcttctttcccat 75
|||||||||||||||
Sbjct: 1349 aagcttctttcccat 1335
>PTA.sd.8478.C1 nseq=4
Length = 3114
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 149 ctggtacaagatatc 163
|||||||||||||||
Sbjct: 1176 ctggtacaagatatc 1190
>PTA.sd.8044.C1 nseq=13
Length = 2316
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 109 agcaataaccatcca 123
|||||||||||||||
Sbjct: 1142 agcaataaccatcca 1128
>PTA.sd.7134.C1 nseq=10
Length = 1605
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 64 cttctttcccatgct 78
|||||||||||||||
Sbjct: 793 cttctttcccatgct 807
>PTA.sd.6878.C1 nseq=6
Length = 1563
Score = 30.2 bits (15), Expect = 4.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 28 actgattataccaagagac 46
|||||| ||||||||||||
Sbjct: 273 actgatgataccaagagac 255
>PTA.sd.6332.C1 nseq=5
Length = 989
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 56 ctcagaagcttcttt 70
|||||||||||||||
Sbjct: 211 ctcagaagcttcttt 225
>PTA.sd.5146.C1 nseq=12
Length = 1384
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 56 ctcagaagcttcttt 70
|||||||||||||||
Sbjct: 833 ctcagaagcttcttt 819
>PTA.sd.371.C1 nseq=5
Length = 3623
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 20 ttgctgatactgatt 34
|||||||||||||||
Sbjct: 1360 ttgctgatactgatt 1374
>PTA.sd.2026.C1 nseq=12
Length = 1689
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 55 gctcagaagcttctt 69
|||||||||||||||
Sbjct: 448 gctcagaagcttctt 462
>PTA.sd.1700.C1 nseq=9
Length = 2621
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 tactgattataccaa 41
|||||||||||||||
Sbjct: 1841 tactgattataccaa 1827
>PTA.sd.16238.C1 nseq=4
Length = 3011
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 20 ttgctgatactgatt 34
|||||||||||||||
Sbjct: 973 ttgctgatactgatt 987
>PTA.sd.15664.C1 nseq=4
Length = 1776
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 aagagactggaaaac 54
|||||||||||||||
Sbjct: 1065 aagagactggaaaac 1079
>PTA.sd.15540.C1 nseq=5
Length = 1306
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 14 ttaaacttgctgata 28
|||||||||||||||
Sbjct: 437 ttaaacttgctgata 451
>PTA.sd.144.C1 nseq=10
Length = 1377
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 55 gctcagaagcttctt 69
|||||||||||||||
Sbjct: 440 gctcagaagcttctt 454
>PTA.sd.13594.C1 nseq=4
Length = 1406
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 147 ctctggtacaagata 161
|||||||||||||||
Sbjct: 1050 ctctggtacaagata 1064
>PTA.sd.12504.C1 nseq=24
Length = 1635
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 120 tccatctacaagaac 134
|||||||||||||||
Sbjct: 460 tccatctacaagaac 474
>PTA.sd.11617.C1 nseq=16
Length = 1477
Score = 30.2 bits (15), Expect = 4.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 16 aaacttgctgatactgatt 34
|||||||||||||| ||||
Sbjct: 1156 aaacttgctgataccgatt 1174
>At5g59900.F
Length = 2724
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 55 gctcagaagcttctt 69
|||||||||||||||
Sbjct: 2425 gctcagaagcttctt 2411
>At4g33590.F
Length = 1401
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 120 tccatctacaagaac 134
|||||||||||||||
Sbjct: 1252 tccatctacaagaac 1266
>At4g05470.F
Length = 915
Score = 30.2 bits (15), Expect = 4.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 45 actggaaaacgctcagaag 63
|||||| ||||||||||||
Sbjct: 198 actggacaacgctcagaag 216
>At3g28820.F
Length = 1305
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 60 gaagcttctttccca 74
|||||||||||||||
Sbjct: 614 gaagcttctttccca 600
>At3g28810.F
Length = 1305
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 60 gaagcttctttccca 74
|||||||||||||||
Sbjct: 614 gaagcttctttccca 600
>At1g61160.F
Length = 540
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 54 cgctcagaagcttct 68
|||||||||||||||
Sbjct: 104 cgctcagaagcttct 90
>At1g30190.F
Length = 837
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 112 aataaccatccatct 126
|||||||||||||||
Sbjct: 693 aataaccatccatct 679
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 167
length of database: 39,126,732
effective HSP length: 16
effective length of query: 151
effective length of database: 38,700,540
effective search space: 5843781540
effective search space used: 5843781540
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)