BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_22331
(167 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01760.F 331 9e-91
PTA.sd.10472.C1 nseq=9 34 0.30
PTA.sd.5811.C1 nseq=6 32 1.2
PTA.sd.15162.C1 nseq=10 32 1.2
PTA.sd.13053.C1 nseq=88 32 1.2
PTA.sd.10589.C1 nseq=8 32 1.2
ycF2.F 32 1.2
rpl23-02.F 32 1.2
PTA.sd.8910.C1 nseq=7 30 4.6
PTA.sd.8780.C1 nseq=11 30 4.6
PTA.sd.7962.C1 nseq=2 30 4.6
PTA.sd.7506.C1 nseq=7 30 4.6
PTA.sd.6230.C1 nseq=7 30 4.6
PTA.sd.5540.C1 nseq=8 30 4.6
PTA.sd.4073.C1 nseq=6 30 4.6
>At1g01760.F
Length = 978
Score = 331 bits (167), Expect = 9e-91
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 1 gcattgctttaccaagtcctccagcctgtgtatatttctaccatcaccgttggacaatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gcattgctttaccaagtcctccagcctgtgtatatttctaccatcaccgttggacaatct 669
Query: 61 ctgcacagtcctgacaatttttctttagctgatcacttgcgaagatctttgtatgagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ctgcacagtcctgacaatttttctttagctgatcacttgcgaagatctttgtatgagagg 729
Query: 121 atcctcccattatcggatgaacttctgacttccttccgtttgaacaa 167
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 atcctcccattatcggatgaacttctgacttccttccgtttgaacaa 776
>PTA.sd.10472.C1 nseq=9
Length = 1459
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 151 tccttccgtttgaacaa 167
|||||||||||||||||
Sbjct: 1087 tccttccgtttgaacaa 1071
>PTA.sd.5811.C1 nseq=6
Length = 1113
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 106 tctttgtatgagagga 121
||||||||||||||||
Sbjct: 80 tctttgtatgagagga 65
>PTA.sd.15162.C1 nseq=10
Length = 3580
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 10 taccaagtcctccagc 25
||||||||||||||||
Sbjct: 1840 taccaagtcctccagc 1825
>PTA.sd.13053.C1 nseq=88
Length = 3314
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 38 ctaccatcaccgttgg 53
||||||||||||||||
Sbjct: 399 ctaccatcaccgttgg 384
>PTA.sd.10589.C1 nseq=8
Length = 4774
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 10 taccaagtcctccagc 25
||||||||||||||||
Sbjct: 3862 taccaagtcctccagc 3847
>ycF2.F
Length = 6885
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 149 cttccttccgtttgaa 164
||||||||||||||||
Sbjct: 1334 cttccttccgtttgaa 1319
>rpl23-02.F
Length = 6885
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 149 cttccttccgtttgaa 164
||||||||||||||||
Sbjct: 1334 cttccttccgtttgaa 1319
>PTA.sd.8910.C1 nseq=7
Length = 1361
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 65 acagtcctgacaatt 79
|||||||||||||||
Sbjct: 785 acagtcctgacaatt 771
>PTA.sd.8780.C1 nseq=11
Length = 2192
Score = 30.2 bits (15), Expect = 4.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 54 acaatctctgcacagtcct 72
|||||||||||| ||||||
Sbjct: 82 acaatctctgcaaagtcct 100
>PTA.sd.7962.C1 nseq=2
Length = 1869
Score = 30.2 bits (15), Expect = 4.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 69 tcctgacaatttttcttta 87
||||||| |||||||||||
Sbjct: 788 tcctgaccatttttcttta 770
>PTA.sd.7506.C1 nseq=7
Length = 2492
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 atctttgtatgagag 119
|||||||||||||||
Sbjct: 2378 atctttgtatgagag 2392
>PTA.sd.6230.C1 nseq=7
Length = 2388
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 27 tgtgtatatttctac 41
|||||||||||||||
Sbjct: 983 tgtgtatatttctac 997
>PTA.sd.5540.C1 nseq=8
Length = 954
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 81 ttctttagctgatca 95
|||||||||||||||
Sbjct: 74 ttctttagctgatca 60
>PTA.sd.4073.C1 nseq=6
Length = 911
Score = 30.2 bits (15), Expect = 4.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 87 agctgatcacttgcgaaga 105
||||||||||||| |||||
Sbjct: 476 agctgatcacttgggaaga 494
>PTA.sd.17705.C1 nseq=5
Length = 2369
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 7 ctttaccaagtcctc 21
|||||||||||||||
Sbjct: 2163 ctttaccaagtcctc 2149
>PTA.sd.17575.C1 nseq=15
Length = 2648
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 98 tgcgaagatctttgt 112
|||||||||||||||
Sbjct: 733 tgcgaagatctttgt 719
>PTA.sd.16500.C1 nseq=13
Length = 611
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 55 caatctctgcacagt 69
|||||||||||||||
Sbjct: 341 caatctctgcacagt 327
>PTA.sd.15794.C1 nseq=6
Length = 2150
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 acttgcgaagatctt 109
|||||||||||||||
Sbjct: 701 acttgcgaagatctt 715
>PTA.sd.14347.C1 nseq=20
Length = 3398
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 124 ctcccattatcggat 138
|||||||||||||||
Sbjct: 2483 ctcccattatcggat 2497
>PTA.sd.1415.C1 nseq=6
Length = 1213
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 79 ttttctttagctgat 93
|||||||||||||||
Sbjct: 962 ttttctttagctgat 948
>PTA.sd.13284.C1 nseq=4
Length = 1061
Score = 30.2 bits (15), Expect = 4.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 131 tatcggatgaacttctgac 149
|||| ||||||||||||||
Sbjct: 606 tatccgatgaacttctgac 624
>PTA.sd.13077.C1 nseq=12
Length = 1947
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 105 atctttgtatgagag 119
|||||||||||||||
Sbjct: 176 atctttgtatgagag 162
>At2g05330.F
Length = 648
Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 acttgcgaagatctt 109
|||||||||||||||
Sbjct: 38 acttgcgaagatctt 52
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 167
length of database: 39,126,732
effective HSP length: 16
effective length of query: 151
effective length of database: 38,700,540
effective search space: 5843781540
effective search space used: 5843781540
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)