BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_21860
(188 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48045.F 373 e-103
PTA.sd.3143.C1 nseq=33 32 1.3
PTA.sd.13686.C1 nseq=3 32 1.3
At5g02990.F 32 1.3
At3g58930.F PTA.sd.10705.singlet 30 5.3
PTA.sd.7253.C1 nseq=7 30 5.3
PTA.sd.6699.C1 nseq=7 30 5.3
PTA.sd.5326.C1 nseq=4 30 5.3
PTA.sd.4782.C1 nseq=8 30 5.3
PTA.sd.4055.C1 nseq=7 30 5.3
PTA.sd.3174.C1 nseq=10 30 5.3
PTA.sd.17991.C1 nseq=5 30 5.3
PTA.sd.1460.C2 nseq=3 30 5.3
PTA.sd.13583.C1 nseq=28 30 5.3
PTA.sd.11767.C1 nseq=4 30 5.3
>At5g48045.F
Length = 354
Score = 373 bits (188), Expect = e-103
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 1 acaaaagctggtttattgttgccggttctccaaacgccccatgaggacatagcattgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 acaaaagctggtttattgttgccggttctccaaacgccccatgaggacatagcattgcag 225
Query: 61 aaagaatgggaaagttacttagggctcttctgttcaaagcgtgcatacacggatacacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 aaagaatgggaaagttacttagggctcttctgttcaaagcgtgcatacacggatacacct 285
Query: 121 ttagtcaatctgagttatgacatcgtgtttccgggaatatggttattggaggctacattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttagtcaatctgagttatgacatcgtgtttccgggaatatggttattggaggctacattg 345
Query: 181 gatcgttg 188
||||||||
Sbjct: 346 gatcgttg 353
>PTA.sd.3143.C1 nseq=33
Length = 2111
Score = 32.2 bits (16), Expect = 1.3
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 88 ttctgttcaaagcgtgcata 107
||||||||||||| ||||||
Sbjct: 1713 ttctgttcaaagcatgcata 1694
>PTA.sd.13686.C1 nseq=3
Length = 2325
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 69 ggaaagttacttaggg 84
||||||||||||||||
Sbjct: 2076 ggaaagttacttaggg 2091
>At5g02990.F
Length = 1302
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 162 gttattggaggctaca 177
||||||||||||||||
Sbjct: 763 gttattggaggctaca 778
>At3g58930.F PTA.sd.10705.singlet
Length = 1368
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 atgggaaagttactt 80
|||||||||||||||
Sbjct: 775 atgggaaagttactt 789
>PTA.sd.7253.C1 nseq=7
Length = 1184
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 aaagaatgggaaagt 75
|||||||||||||||
Sbjct: 460 aaagaatgggaaagt 474
>PTA.sd.6699.C1 nseq=7
Length = 849
Score = 30.2 bits (15), Expect = 5.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 9 tggtttattgttgccggtt 27
|||||||||||| ||||||
Sbjct: 744 tggtttattgtttccggtt 762
>PTA.sd.5326.C1 nseq=4
Length = 1074
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 4 aaagctggtttattg 18
|||||||||||||||
Sbjct: 719 aaagctggtttattg 733
>PTA.sd.4782.C1 nseq=8
Length = 2114
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 67 tgggaaagttactta 81
|||||||||||||||
Sbjct: 827 tgggaaagttactta 841
>PTA.sd.4055.C1 nseq=7
Length = 1828
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 149 ttccgggaatatggt 163
|||||||||||||||
Sbjct: 493 ttccgggaatatggt 479
>PTA.sd.3174.C1 nseq=10
Length = 4185
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 126 caatctgagttatga 140
|||||||||||||||
Sbjct: 1273 caatctgagttatga 1259
>PTA.sd.17991.C1 nseq=5
Length = 1644
Score = 30.2 bits (15), Expect = 5.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 63 agaatgggaaagttactta 81
||||||| |||||||||||
Sbjct: 727 agaatggcaaagttactta 745
>PTA.sd.1460.C2 nseq=3
Length = 1272
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 agaaagaatgggaaa 73
|||||||||||||||
Sbjct: 270 agaaagaatgggaaa 284
>PTA.sd.13583.C1 nseq=28
Length = 1503
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 agaaagaatgggaaa 73
|||||||||||||||
Sbjct: 1466 agaaagaatgggaaa 1480
>PTA.sd.11767.C1 nseq=4
Length = 2121
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 85 ctcttctgttcaaag 99
|||||||||||||||
Sbjct: 396 ctcttctgttcaaag 410
>orF1451.F
Length = 438
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 60 gaaagaatgggaaag 74
|||||||||||||||
Sbjct: 33 gaaagaatgggaaag 47
>At5g09930.F
Length = 2025
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 65 aatgggaaagttact 79
|||||||||||||||
Sbjct: 594 aatgggaaagttact 608
>At5g06905.F
Length = 1587
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 122 tagtcaatctgagtt 136
|||||||||||||||
Sbjct: 883 tagtcaatctgagtt 869
>At3g30400.F
Length = 1680
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 94 tcaaagcgtgcatac 108
|||||||||||||||
Sbjct: 943 tcaaagcgtgcatac 929
>At2g07736.F
Length = 438
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 60 gaaagaatgggaaag 74
|||||||||||||||
Sbjct: 33 gaaagaatgggaaag 47
>At2g05320.F
Length = 1260
Score = 30.2 bits (15), Expect = 5.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 55 ttgcagaaagaatgggaaa 73
||||||| |||||||||||
Sbjct: 815 ttgcagagagaatgggaaa 833
>At1g77938.F
Length = 333
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 168 ggaggctacattgga 182
|||||||||||||||
Sbjct: 22 ggaggctacattgga 36
>At1g74350.F
Length = 2262
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 52 gcattgcagaaagaa 66
|||||||||||||||
Sbjct: 1189 gcattgcagaaagaa 1203
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 188
length of database: 39,126,732
effective HSP length: 16
effective length of query: 172
effective length of database: 38,700,540
effective search space: 6656492880
effective search space used: 6656492880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)