BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_21144
(215 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55820.F 426 e-119
PTA.sd.6398.C1 nseq=12 46 1e-04
PTA.sd.9655.C1 nseq=13 40 0.006
PTA.sd.4693.C1 nseq=4 40 0.006
At1g80980.F 40 0.006
PTA.sd.5796.C1 nseq=9 38 0.025
At3g46500.F 38 0.025
PTA.sd.9942.C1 nseq=25 36 0.099
PTA.sd.9531.C1 nseq=7 36 0.099
PTA.sd.8495.C1 nseq=6 36 0.099
PTA.sd.6603.C1 nseq=3 36 0.099
PTA.sd.4681.C1 nseq=4 36 0.099
PTA.sd.2216.C1 nseq=11 36 0.099
PTA.sd.12172.C1 nseq=10 36 0.099
PTA.sd.10766.C1 nseq=11 36 0.099
>At5g55820.F
Length = 5481
Score = 426 bits (215), Expect = e-119
Identities = 215/215 (100%)
Strand = Plus / Plus
Query: 1 aaagggatgtcaaagtaaaggccctggaggctgctgaggcttcaaaacgtattgctgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4541 aaagggatgtcaaagtaaaggccctggaggctgctgaggcttcaaaacgtattgctgaac 4600
Query: 61 agaaagagaatgatcgtaagctgaagaaggaagctatgaagcttgaacgggcaaaacagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4601 agaaagagaatgatcgtaagctgaagaaggaagctatgaagcttgaacgggcaaaacagg 4660
Query: 121 aacaggaaaatctgaaaaagcaagagatagagaagaaaaagaaagaagaagatcgaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4661 aacaggaaaatctgaaaaagcaagagatagagaagaaaaagaaagaagaagatcgaaaga 4720
Query: 181 aaaaggaggcagaaatggcttggaagcaggagatg 215
|||||||||||||||||||||||||||||||||||
Sbjct: 4721 aaaaggaggcagaaatggcttggaagcaggagatg 4755
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 138 aagcaagagatagagaagaaaaagaaagaagaaga 172
||||| ||||| || ||||||||||||||||||||
Sbjct: 4744 aagcaggagatggaaaagaaaaagaaagaagaaga 4778
>PTA.sd.6398.C1 nseq=12
Length = 1813
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 147 atagagaagaaaaagaaagaagaagat 173
||||| |||||||||||||||||||||
Sbjct: 1627 atagataagaaaaagaaagaagaagat 1601
>PTA.sd.9655.C1 nseq=13
Length = 906
Score = 40.1 bits (20), Expect = 0.006
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 156 aaaaagaaagaagaagatcgaaagaaaaagga 187
||||| ||||||||||||| ||| ||||||||
Sbjct: 40 aaaaaaaaagaagaagatcaaaaaaaaaagga 71
>PTA.sd.4693.C1 nseq=4
Length = 860
Score = 40.1 bits (20), Expect = 0.006
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 149 agagaagaaaaagaaagaagaaga 172
||||||||||| ||||||||||||
Sbjct: 405 agagaagaaaaggaaagaagaaga 428
Score = 30.2 bits (15), Expect = 6.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 153 aagaaaaagaaagaagaag 171
|||||| ||||||||||||
Sbjct: 430 aagaaagagaaagaagaag 448
>At1g80980.F
Length = 645
Score = 40.1 bits (20), Expect = 0.006
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 149 agagaagaaaaagaaagaagaaga 172
||||||||||| ||||||||||||
Sbjct: 354 agagaagaaaaggaaagaagaaga 377
Score = 30.2 bits (15), Expect = 6.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 153 aagaaaaagaaagaagaag 171
|||||| ||||||||||||
Sbjct: 379 aagaaagagaaagaagaag 397
>PTA.sd.5796.C1 nseq=9
Length = 1953
Score = 38.2 bits (19), Expect = 0.025
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 151 agaagaaaaagaaagaagaagat 173
||||||||||||||||| |||||
Sbjct: 727 agaagaaaaagaaagaaaaagat 749
>At3g46500.F
Length = 891
Score = 38.2 bits (19), Expect = 0.025
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 154 agaaaaagaaagaagaaga 172
|||||||||||||||||||
Sbjct: 134 agaaaaagaaagaagaaga 116
>PTA.sd.9942.C1 nseq=25
Length = 1396
Score = 36.2 bits (18), Expect = 0.099
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 156 aaaaagaaagaagaagat 173
||||||||||||||||||
Sbjct: 1191 aaaaagaaagaagaagat 1208
>PTA.sd.9531.C1 nseq=7
Length = 3794
Score = 36.2 bits (18), Expect = 0.099
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 152 gaagaaaaagaaagaagaagat 173
||||||||||| ||||||||||
Sbjct: 37 gaagaaaaagagagaagaagat 58
>PTA.sd.8495.C1 nseq=6
Length = 1323
Score = 36.2 bits (18), Expect = 0.099
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 77 taagctgaagaaggaagc 94
||||||||||||||||||
Sbjct: 1050 taagctgaagaaggaagc 1067
>PTA.sd.6603.C1 nseq=3
Length = 2828
Score = 36.2 bits (18), Expect = 0.099
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 148 tagagaagaaaaagaaag 165
||||||||||||||||||
Sbjct: 1391 tagagaagaaaaagaaag 1408
>PTA.sd.4681.C1 nseq=4
Length = 1948
Score = 36.2 bits (18), Expect = 0.099
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 156 aaaaagaaagaagaagat 173
||||||||||||||||||
Sbjct: 222 aaaaagaaagaagaagat 205
>PTA.sd.2216.C1 nseq=11
Length = 2137
Score = 36.2 bits (18), Expect = 0.099
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 172 atcgaaagaaaaaggagg 189
||||||||||||||||||
Sbjct: 1241 atcgaaagaaaaaggagg 1258
>PTA.sd.12172.C1 nseq=10
Length = 2055
Score = 36.2 bits (18), Expect = 0.099
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 151 agaagaaaaagaaagaagaaga 172
||||||| ||||||||||||||
Sbjct: 74 agaagaagaagaaagaagaaga 53
>PTA.sd.10766.C1 nseq=11
Length = 5218
Score = 36.2 bits (18), Expect = 0.099
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 90 gaagctatgaagcttgaa 107
||||||||||||||||||
Sbjct: 3033 gaagctatgaagcttgaa 3050
>At5g59390.F
Length = 1686
Score = 36.2 bits (18), Expect = 0.099
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 88 aggaagctatgaagcttg 105
||||||||||||||||||
Sbjct: 881 aggaagctatgaagcttg 898
>At4g03220.F
Length = 1497
Score = 36.2 bits (18), Expect = 0.099
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 151 agaagaaaaagaaagaagaaga 172
||||||| ||||||||||||||
Sbjct: 26 agaagaagaagaaagaagaaga 47
>At2g21900.F
Length = 594
Score = 36.2 bits (18), Expect = 0.099
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 163 aagaagaagatcgaaaga 180
||||||||||||||||||
Sbjct: 424 aagaagaagatcgaaaga 441
>PTA.sd.7414.C1 nseq=3
Length = 2845
Score = 34.2 bits (17), Expect = 0.39
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 151 agaagaaaaagaaagaagaag 171
||||||| |||||||||||||
Sbjct: 204 agaagaagaagaaagaagaag 184
>PTA.sd.5517.C1 nseq=2
Length = 1138
Score = 34.2 bits (17), Expect = 0.39
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 152 gaagaaaaagaaagaagaaga 172
||||||||||||||| |||||
Sbjct: 779 gaagaaaaagaaagatgaaga 799
>PTA.sd.3593.C1 nseq=98
Length = 1482
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 151 agaagaaaaagaaagaa 167
|||||||||||||||||
Sbjct: 1319 agaagaaaaagaaagaa 1303
>PTA.sd.3428.C1 nseq=12
Length = 1077
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 156 aaaaagaaagaagaaga 172
|||||||||||||||||
Sbjct: 960 aaaaagaaagaagaaga 976
>PTA.sd.2926.C1 nseq=34
Length = 1764
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 151 agaagaaaaagaaagaa 167
|||||||||||||||||
Sbjct: 1482 agaagaaaaagaaagaa 1466
>PTA.sd.17677.C1 nseq=17
Length = 1146
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 157 aaaagaaagaagaagat 173
|||||||||||||||||
Sbjct: 993 aaaagaaagaagaagat 977
>PTA.sd.17453.C1 nseq=13
Length = 1535
Score = 34.2 bits (17), Expect = 0.39
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 150 gagaagaaaaagaaagaagaa 170
|||||||| ||||||||||||
Sbjct: 116 gagaagaagaagaaagaagaa 96
>PTA.sd.16907.C1 nseq=2
Length = 625
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 157 aaaagaaagaagaagat 173
|||||||||||||||||
Sbjct: 85 aaaagaaagaagaagat 101
>PTA.sd.16173.C1 nseq=2
Length = 4221
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 142 aagagatagagaagaaa 158
|||||||||||||||||
Sbjct: 3680 aagagatagagaagaaa 3696
>PTA.sd.13430.C1 nseq=8
Length = 1639
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 151 agaagaaaaagaaagaa 167
|||||||||||||||||
Sbjct: 1342 agaagaaaaagaaagaa 1358
>PTA.sd.13120.C1 nseq=7
Length = 8938
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 52 ttgctgaacagaaagag 68
|||||||||||||||||
Sbjct: 5129 ttgctgaacagaaagag 5145
>PTA.sd.1137.C1 nseq=2
Length = 2601
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 88 aggaagctatgaagctt 104
|||||||||||||||||
Sbjct: 227 aggaagctatgaagctt 243
>PTA.sd.10091.C1 nseq=16
Length = 2339
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 156 aaaaagaaagaagaaga 172
|||||||||||||||||
Sbjct: 251 aaaaagaaagaagaaga 235
>At3g29280.F
Length = 564
Score = 34.2 bits (17), Expect = 0.39
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 143 agagatagagaagaaaaagaa 163
||||||||||||||| |||||
Sbjct: 21 agagatagagaagaagaagaa 41
>At3g28520.F
Length = 1437
Score = 34.2 bits (17), Expect = 0.39
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 153 aagaaaaagaaagaagaagat 173
||||||||||| |||||||||
Sbjct: 895 aagaaaaagaaggaagaagat 915
>At2g05400.F
Length = 654
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 153 aagaaaaagaaagaaga 169
|||||||||||||||||
Sbjct: 487 aagaaaaagaaagaaga 503
>At1g20720.F
Length = 2961
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 182 aaaggaggcagaaatgg 198
|||||||||||||||||
Sbjct: 1188 aaaggaggcagaaatgg 1204
>At5g65860.F PTA.sd.17939.singlet
Length = 981
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 164 agaagaagatcgaaag 179
||||||||||||||||
Sbjct: 266 agaagaagatcgaaag 251
>At5g44750.F PTA.sd.16393.singlet
Length = 2868
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 78 aagctgaagaaggaag 93
||||||||||||||||
Sbjct: 455 aagctgaagaaggaag 470
>At1g30860.F PTA.sd.2160.singlet
Length = 2220
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 157 aaaagaaagaagaaga 172
||||||||||||||||
Sbjct: 1220 aaaagaaagaagaaga 1235
>PTA.sd.9925.C1 nseq=46
Length = 2322
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 139 agcaagagatagagaa 154
||||||||||||||||
Sbjct: 22 agcaagagatagagaa 7
>PTA.sd.9836.C1 nseq=6
Length = 1882
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 151 agaagaaaaagaaaga 166
||||||||||||||||
Sbjct: 362 agaagaaaaagaaaga 377
>PTA.sd.9302.C1 nseq=2
Length = 1253
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 152 gaagaaaaagaaagaa 167
||||||||||||||||
Sbjct: 186 gaagaaaaagaaagaa 201
>PTA.sd.8647.C1 nseq=4
Length = 2632
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 143 agagatagagaagaaa 158
||||||||||||||||
Sbjct: 1425 agagatagagaagaaa 1410
>PTA.sd.7789.C1 nseq=5
Length = 1118
Score = 32.2 bits (16), Expect = 1.5
Identities = 26/28 (92%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 145 agatagagaagaaaaagaaagaagaaga 172
||||||||||||| ||| ||||||||||
Sbjct: 1016 agatagagaagaagaag-aagaagaaga 1042
>PTA.sd.734.C1 nseq=8
Length = 1232
Score = 32.2 bits (16), Expect = 1.5
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 153 aagaaaaagaaagaagaaga 172
|||| |||||||||||||||
Sbjct: 138 aagataaagaaagaagaaga 119
>PTA.sd.7155.C1 nseq=7
Length = 2961
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 144 gagatagagaagaaaa 159
||||||||||||||||
Sbjct: 54 gagatagagaagaaaa 39
>PTA.sd.7127.C1 nseq=5
Length = 1015
Score = 32.2 bits (16), Expect = 1.5
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 153 aagaaaaagaaagaagaaga 172
||||| ||||||||||||||
Sbjct: 121 aagaagaagaaagaagaaga 140
>PTA.sd.6823.C1 nseq=2
Length = 1385
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 153 aagaaaaagaaagaag 168
||||||||||||||||
Sbjct: 1343 aagaaaaagaaagaag 1328
>PTA.sd.648.C1 nseq=2
Length = 1857
Score = 32.2 bits (16), Expect = 1.5
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 144 gagatagagaagaaaaagaa 163
|||||||||||||| |||||
Sbjct: 259 gagatagagaagaagaagaa 278
>PTA.sd.6096.C1 nseq=5
Length = 1641
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 gatgtcaaagtaaagg 21
||||||||||||||||
Sbjct: 1123 gatgtcaaagtaaagg 1138
>PTA.sd.6095.C1 nseq=11
Length = 1701
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 gatgtcaaagtaaagg 21
||||||||||||||||
Sbjct: 1165 gatgtcaaagtaaagg 1180
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 215
length of database: 39,126,732
effective HSP length: 16
effective length of query: 199
effective length of database: 38,700,540
effective search space: 7701407460
effective search space used: 7701407460
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)