BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_20941
(221 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g21000.F 438 e-123
PTA.sd.16087.C1 nseq=5 36 0.10
At2g01810.F 36 0.10
PTA.sd.15238.C1 nseq=9 34 0.40
PTA.sd.12322.C1 nseq=9 34 0.40
At3g28415.F 34 0.40
PTA.sd.324.C1 nseq=2 32 1.6
PTA.sd.16728.C1 nseq=3 32 1.6
PTA.sd.15506.C1 nseq=5 32 1.6
PTA.sd.10850.C1 nseq=5 32 1.6
PTA.sd.10598.C1 nseq=6 32 1.6
PTA.sd.10434.C1 nseq=5 32 1.6
PTA.sd.1038.C1 nseq=15 32 1.6
At4g20060.F 32 1.6
At2g05060.F 32 1.6
>At5g21000.F
Length = 456
Score = 438 bits (221), Expect = e-123
Identities = 221/221 (100%)
Strand = Plus / Plus
Query: 1 ctgattatcttccacatctcaaggctgttgcattgttcattgtgtctttgctgaaatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ctgattatcttccacatctcaaggctgttgcattgttcattgtgtctttgctgaaatttg 292
Query: 61 agaagaaactgaaatctgcagctgagaagcagtgctcagaaattatagcatcggtctacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 agaagaaactgaaatctgcagctgagaagcagtgctcagaaattatagcatcggtctacg 352
Query: 121 gggagatacaactagagttggagaatgataggtcggtatatacagatagatatgattatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gggagatacaactagagttggagaatgataggtcggtatatacagatagatatgattatc 412
Query: 181 atgtactggtttttaatcaaatcacaaagaagattagagta 221
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 atgtactggtttttaatcaaatcacaaagaagattagagta 453
>PTA.sd.16087.C1 nseq=5
Length = 1793
Score = 36.2 bits (18), Expect = 0.10
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 7 atcttccacatctcaagg 24
||||||||||||||||||
Sbjct: 3 atcttccacatctcaagg 20
>At2g01810.F
Length = 2094
Score = 36.2 bits (18), Expect = 0.10
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 67 aactgaaatctgcagctgagaa 88
|||||||||||||||| |||||
Sbjct: 1697 aactgaaatctgcagcagagaa 1718
>PTA.sd.15238.C1 nseq=9
Length = 936
Score = 34.2 bits (17), Expect = 0.40
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 61 agaagaaactgaaatctgcag 81
||||||| |||||||||||||
Sbjct: 612 agaagaagctgaaatctgcag 632
>PTA.sd.12322.C1 nseq=9
Length = 2280
Score = 34.2 bits (17), Expect = 0.40
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 57 tttgagaagaaactgaa 73
|||||||||||||||||
Sbjct: 59 tttgagaagaaactgaa 43
>At3g28415.F
Length = 3295
Score = 34.2 bits (17), Expect = 0.40
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 44 gtctttgctgaaatttgagaa 64
||||||| |||||||||||||
Sbjct: 1806 gtctttgttgaaatttgagaa 1786
>PTA.sd.324.C1 nseq=2
Length = 2534
Score = 32.2 bits (16), Expect = 1.6
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 58 ttgagaagaaactgaaatct 77
||||| ||||||||||||||
Sbjct: 509 ttgagcagaaactgaaatct 528
>PTA.sd.16728.C1 nseq=3
Length = 1336
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 53 gaaatttgagaagaaa 68
||||||||||||||||
Sbjct: 1284 gaaatttgagaagaaa 1299
>PTA.sd.15506.C1 nseq=5
Length = 1790
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 199 aaatcacaaagaagat 214
||||||||||||||||
Sbjct: 1297 aaatcacaaagaagat 1312
>PTA.sd.10850.C1 nseq=5
Length = 5455
Score = 32.2 bits (16), Expect = 1.6
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 56 atttgagaagaaactgaaat 75
|||||||||||| |||||||
Sbjct: 5247 atttgagaagaacctgaaat 5266
>PTA.sd.10598.C1 nseq=6
Length = 2720
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 195 aatcaaatcacaaaga 210
||||||||||||||||
Sbjct: 147 aatcaaatcacaaaga 132
>PTA.sd.10434.C1 nseq=5
Length = 1247
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 198 caaatcacaaagaaga 213
||||||||||||||||
Sbjct: 1192 caaatcacaaagaaga 1177
>PTA.sd.1038.C1 nseq=15
Length = 2436
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 64 agaaactgaaatctgc 79
||||||||||||||||
Sbjct: 255 agaaactgaaatctgc 270
>At4g20060.F
Length = 3405
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 135 gagttggagaatgata 150
||||||||||||||||
Sbjct: 3061 gagttggagaatgata 3046
>At2g05060.F
Length = 948
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 131 actagagttggagaat 146
||||||||||||||||
Sbjct: 888 actagagttggagaat 903
>At3g63440.F PTA.sd.11049.singlet
Length = 1515
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 77 tgcagctgagaagca 91
|||||||||||||||
Sbjct: 43 tgcagctgagaagca 29
>At3g61680.F PTA.sd.10910.singlet
Length = 1977
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 56 atttgagaagaaact 70
|||||||||||||||
Sbjct: 656 atttgagaagaaact 670
>At2g47410.F PTA.sd.7381.singlet
Length = 4170
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 200 aatcacaaagaagat 214
|||||||||||||||
Sbjct: 1684 aatcacaaagaagat 1670
>PTA.sd.9868.C1 nseq=13
Length = 1165
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 57 tttgagaagaaactg 71
|||||||||||||||
Sbjct: 72 tttgagaagaaactg 58
>PTA.sd.862.C1 nseq=5
Length = 1585
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 201 atcacaaagaagatt 215
|||||||||||||||
Sbjct: 266 atcacaaagaagatt 280
>PTA.sd.8388.C1 nseq=13
Length = 1883
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 42 gtgtctttgctgaaa 56
|||||||||||||||
Sbjct: 1218 gtgtctttgctgaaa 1232
>PTA.sd.3545.C1 nseq=3
Length = 2757
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 60 gagaagaaactgaaa 74
|||||||||||||||
Sbjct: 742 gagaagaaactgaaa 756
>PTA.sd.3158.C1 nseq=2
Length = 2629
Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 60 gagaagaaactgaaatctg 78
|||||||||||||| ||||
Sbjct: 2086 gagaagaaactgaagtctg 2104
>PTA.sd.2815.C1 nseq=30
Length = 879
Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 175 attatcatgtactggtttt 193
||||||||||| |||||||
Sbjct: 734 attatcatgtaatggtttt 752
>PTA.sd.2154.C1 nseq=2
Length = 1354
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 204 acaaagaagattaga 218
|||||||||||||||
Sbjct: 1066 acaaagaagattaga 1080
>PTA.sd.2136.C1 nseq=3
Length = 1314
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 28 ttgcattgttcattg 42
|||||||||||||||
Sbjct: 268 ttgcattgttcattg 254
>PTA.sd.17662.C1 nseq=9
Length = 2194
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 45 tctttgctgaaattt 59
|||||||||||||||
Sbjct: 2099 tctttgctgaaattt 2113
>PTA.sd.17319.C1 nseq=9
Length = 2659
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 42 gtgtctttgctgaaa 56
|||||||||||||||
Sbjct: 1090 gtgtctttgctgaaa 1104
>PTA.sd.15775.C1 nseq=5
Length = 1547
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 199 aaatcacaaagaaga 213
|||||||||||||||
Sbjct: 820 aaatcacaaagaaga 806
>PTA.sd.15623.C1 nseq=5
Length = 1566
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 188 ggtttttaatcaaat 202
|||||||||||||||
Sbjct: 1024 ggtttttaatcaaat 1010
>PTA.sd.15619.C1 nseq=2
Length = 1564
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 188 ggtttttaatcaaat 202
|||||||||||||||
Sbjct: 949 ggtttttaatcaaat 935
>PTA.sd.15591.C1 nseq=65
Length = 1046
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 16 atctcaaggctgttg 30
|||||||||||||||
Sbjct: 633 atctcaaggctgttg 647
>PTA.sd.14455.C1 nseq=3
Length = 2688
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 138 ttggagaatgatagg 152
|||||||||||||||
Sbjct: 1300 ttggagaatgatagg 1286
>PTA.sd.13828.C1 nseq=12
Length = 2378
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 77 tgcagctgagaagca 91
|||||||||||||||
Sbjct: 1088 tgcagctgagaagca 1102
>PTA.sd.1287.C1 nseq=3
Length = 3959
Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 190 tttttaatcaaatcacaaa 208
|||| ||||||||||||||
Sbjct: 2354 ttttgaatcaaatcacaaa 2372
>PTA.sd.11636.C1 nseq=8
Length = 2344
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 139 tggagaatgataggt 153
|||||||||||||||
Sbjct: 306 tggagaatgataggt 292
>PTA.sd.10848.C1 nseq=18
Length = 1762
Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 47 tttgctgaaatttgagaag 65
|||||||||||| ||||||
Sbjct: 1669 tttgctgaaattcgagaag 1687
>PTA.sd.10777.C1 nseq=11
Length = 2457
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 56 atttgagaagaaact 70
|||||||||||||||
Sbjct: 1729 atttgagaagaaact 1715
>At5g19640.F
Length = 1830
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 158 atatacagatagata 172
|||||||||||||||
Sbjct: 555 atatacagatagata 541
>At3g60100.F
Length = 1302
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 gaagaaactgaaatc 76
|||||||||||||||
Sbjct: 63 gaagaaactgaaatc 77
>At3g27040.F
Length = 1077
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 60 gagaagaaactgaaa 74
|||||||||||||||
Sbjct: 964 gagaagaaactgaaa 978
>At3g20400.F
Length = 312
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 187 tggtttttaatcaaa 201
|||||||||||||||
Sbjct: 158 tggtttttaatcaaa 172
>At3g06490.F
Length = 972
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 36 ttcattgtgtctttg 50
|||||||||||||||
Sbjct: 419 ttcattgtgtctttg 405
>At2g01790.F
Length = 810
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 60 gagaagaaactgaaa 74
|||||||||||||||
Sbjct: 697 gagaagaaactgaaa 711
>At1g31390.F
Length = 807
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 60 gagaagaaactgaaa 74
|||||||||||||||
Sbjct: 718 gagaagaaactgaaa 732
>At1g14070.F
Length = 1530
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 137 gttggagaatgatag 151
|||||||||||||||
Sbjct: 27 gttggagaatgatag 13
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 221
length of database: 39,126,732
effective HSP length: 16
effective length of query: 205
effective length of database: 38,700,540
effective search space: 7933610700
effective search space used: 7933610700
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)