BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_20437
(238 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17610.F 472 e-133
PTA.sd.4209.C1 nseq=9 34 0.44
PTA.sd.16664.C1 nseq=5 34 0.44
PTA.sd.6129.C1 nseq=8 32 1.7
PTA.sd.1692.C1 nseq=4 32 1.7
PTA.sd.15900.C1 nseq=2 32 1.7
PTA.sd.13781.C1 nseq=34 32 1.7
PTA.sd.11566.C1 nseq=34 32 1.7
PTA.sd.10484.C1 nseq=8 32 1.7
At4g07660.F 32 1.7
At4g07640.F 32 1.7
At4g07600.F 32 1.7
At1g60020.F 32 1.7
At5g28850.F PTA.sd.15817.singlet 30 6.8
PTA.sd.8444.C1 nseq=22 30 6.8
>At4g17610.F
Length = 5553
Score = 472 bits (238), Expect = e-133
Identities = 238/238 (100%)
Strand = Plus / Plus
Query: 1 gtaagggaagatctccgtgcctccatggcaaaggatgtagttaccataaaaaatgaaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4774 gtaagggaagatctccgtgcctccatggcaaaggatgtagttaccataaaaaatgaaggc 4833
Query: 61 ttcaagattgatgaagagcccaagcgtcggttgatcatgtccacgacagatgaagaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4834 ttcaagattgatgaagagcccaagcgtcggttgatcatgtccacgacagatgaagaaagg 4893
Query: 121 ctttctgagccatcttcgttggatttccagaggaagatcactctttccaaacatgagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4894 ctttctgagccatcttcgttggatttccagaggaagatcactctttccaaacatgagaag 4953
Query: 181 caagatgctagttcaacttctgtgctccgaaacggggaaacttacaagcggctctttg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4954 caagatgctagttcaacttctgtgctccgaaacggggaaacttacaagcggctctttg 5011
>PTA.sd.4209.C1 nseq=9
Length = 1749
Score = 34.2 bits (17), Expect = 0.44
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 55 gaaggcttcaagattgatgaa 75
|||| ||||||||||||||||
Sbjct: 1194 gaagacttcaagattgatgaa 1214
>PTA.sd.16664.C1 nseq=5
Length = 2007
Score = 34.2 bits (17), Expect = 0.44
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 61 ttcaagattgatgaaga 77
|||||||||||||||||
Sbjct: 1182 ttcaagattgatgaaga 1198
>PTA.sd.6129.C1 nseq=8
Length = 658
Score = 32.2 bits (16), Expect = 1.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 60 cttcaagattgatgaa 75
||||||||||||||||
Sbjct: 175 cttcaagattgatgaa 190
>PTA.sd.1692.C1 nseq=4
Length = 1937
Score = 32.2 bits (16), Expect = 1.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 131 catcttcgttggattt 146
||||||||||||||||
Sbjct: 1163 catcttcgttggattt 1148
>PTA.sd.15900.C1 nseq=2
Length = 3616
Score = 32.2 bits (16), Expect = 1.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 121 ctttctgagccatctt 136
||||||||||||||||
Sbjct: 205 ctttctgagccatctt 220
>PTA.sd.13781.C1 nseq=34
Length = 2892
Score = 32.2 bits (16), Expect = 1.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 41 ttaccataaaaaatga 56
||||||||||||||||
Sbjct: 2703 ttaccataaaaaatga 2718
>PTA.sd.11566.C1 nseq=34
Length = 2124
Score = 32.2 bits (16), Expect = 1.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 61 ttcaagattgatgaag 76
||||||||||||||||
Sbjct: 1528 ttcaagattgatgaag 1543
>PTA.sd.10484.C1 nseq=8
Length = 1474
Score = 32.2 bits (16), Expect = 1.7
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 139 ttggatttccagaggaagat 158
|||||||| |||||||||||
Sbjct: 61 ttggatttacagaggaagat 80
>At4g07660.F
Length = 2175
Score = 32.2 bits (16), Expect = 1.7
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 65 agattgatgaagagcccaag 84
|||| |||||||||||||||
Sbjct: 296 agatggatgaagagcccaag 315
>At4g07640.F
Length = 2601
Score = 32.2 bits (16), Expect = 1.7
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 65 agattgatgaagagcccaag 84
|||| |||||||||||||||
Sbjct: 1859 agatggatgaagagcccaag 1878
>At4g07600.F
Length = 1893
Score = 32.2 bits (16), Expect = 1.7
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 65 agattgatgaagagcccaag 84
|||| |||||||||||||||
Sbjct: 443 agatggatgaagagcccaag 462
>At1g60020.F
Length = 3585
Score = 32.2 bits (16), Expect = 1.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 223 tacaagcggctctttg 238
||||||||||||||||
Sbjct: 1894 tacaagcggctctttg 1909
>At5g28850.F PTA.sd.15817.singlet
Length = 1611
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 210 aaacggggaaactta 224
|||||||||||||||
Sbjct: 859 aaacggggaaactta 873
>PTA.sd.8444.C1 nseq=22
Length = 1977
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 57 aggcttcaagattga 71
|||||||||||||||
Sbjct: 120 aggcttcaagattga 106
>PTA.sd.8271.C1 nseq=3
Length = 2109
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 63 caagattgatgaaga 77
|||||||||||||||
Sbjct: 1170 caagattgatgaaga 1184
>PTA.sd.7540.C1 nseq=11
Length = 1610
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 152 ggaagatcactcttt 166
|||||||||||||||
Sbjct: 243 ggaagatcactcttt 257
>PTA.sd.669.C1 nseq=4
Length = 1167
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 146 tccagaggaagatca 160
|||||||||||||||
Sbjct: 517 tccagaggaagatca 531
>PTA.sd.525.C1 nseq=5
Length = 3378
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 123 ttctgagccatcttc 137
|||||||||||||||
Sbjct: 1082 ttctgagccatcttc 1068
>PTA.sd.5196.C1 nseq=11
Length = 1654
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 122 tttctgagccatctt 136
|||||||||||||||
Sbjct: 984 tttctgagccatctt 970
>PTA.sd.512.C1 nseq=7
Length = 3474
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 123 ttctgagccatcttc 137
|||||||||||||||
Sbjct: 1213 ttctgagccatcttc 1199
>PTA.sd.4714.C1 nseq=10
Length = 1484
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 175 gagaagcaagatgct 189
|||||||||||||||
Sbjct: 439 gagaagcaagatgct 425
>PTA.sd.3652.C1 nseq=8
Length = 6551
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 70 gatgaagagcccaag 84
|||||||||||||||
Sbjct: 151 gatgaagagcccaag 165
>PTA.sd.16681.C1 nseq=3
Length = 1221
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 107 cagatgaagaaaggc 121
|||||||||||||||
Sbjct: 695 cagatgaagaaaggc 709
>PTA.sd.16385.C1 nseq=5
Length = 2841
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 143 atttccagaggaaga 157
|||||||||||||||
Sbjct: 114 atttccagaggaaga 100
>PTA.sd.16384.C1 nseq=5
Length = 1201
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 143 atttccagaggaaga 157
|||||||||||||||
Sbjct: 170 atttccagaggaaga 156
>PTA.sd.16310.C1 nseq=3
Length = 1062
Score = 30.2 bits (15), Expect = 6.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 151 aggaagatcactctttcca 169
|||||||||||| ||||||
Sbjct: 24 aggaagatcactttttcca 6
>PTA.sd.15818.C1 nseq=12
Length = 2161
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 210 aaacggggaaactta 224
|||||||||||||||
Sbjct: 1077 aaacggggaaactta 1091
>PTA.sd.13417.C1 nseq=4
Length = 1624
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 145 ttccagaggaagatc 159
|||||||||||||||
Sbjct: 358 ttccagaggaagatc 372
>PTA.sd.13205.C1 nseq=2
Length = 2438
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 ttcaagattgatgaa 75
|||||||||||||||
Sbjct: 2283 ttcaagattgatgaa 2297
>PTA.sd.12754.C1 nseq=7
Length = 2646
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 63 caagattgatgaaga 77
|||||||||||||||
Sbjct: 1462 caagattgatgaaga 1476
>PTA.sd.12219.C1 nseq=5
Length = 2368
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 144 tttccagaggaagat 158
|||||||||||||||
Sbjct: 1602 tttccagaggaagat 1616
>At5g14160.F
Length = 1059
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 160 actctttccaaacat 174
|||||||||||||||
Sbjct: 1023 actctttccaaacat 1037
>At3g21050.F
Length = 1263
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 132 atcttcgttggattt 146
|||||||||||||||
Sbjct: 137 atcttcgttggattt 123
>At3g03560.F
Length = 1311
Score = 30.2 bits (15), Expect = 6.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 169 aaacatgagaagcaa 183
|||||||||||||||
Sbjct: 913 aaacatgagaagcaa 899
>At2g10620.F
Length = 1356
Score = 30.2 bits (15), Expect = 6.8
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 65 agattgatgaagagcccaa 83
|||| ||||||||||||||
Sbjct: 1127 agatggatgaagagcccaa 1145
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 238
length of database: 39,126,732
effective HSP length: 16
effective length of query: 222
effective length of database: 38,700,540
effective search space: 8591519880
effective search space used: 8591519880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)