BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_19592
(269 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g03735.F 533 e-151
PTA.sd.3147.C1 nseq=9 36 0.13
PTA.sd.12758.C1 nseq=20 36 0.13
PTA.sd.12483.C1 nseq=3 34 0.50
PTA.sd.8398.C1 nseq=6 32 2.0
PTA.sd.8116.C1 nseq=7 32 2.0
PTA.sd.658.C1 nseq=11 32 2.0
PTA.sd.547.C1 nseq=2 32 2.0
PTA.sd.2459.C1 nseq=93 32 2.0
PTA.sd.17824.C1 nseq=15 32 2.0
PTA.sd.1662.C1 nseq=33 32 2.0
At4g29920.F 32 2.0
At4g11940.F 32 2.0
At1g59930.F 32 2.0
At1g59920.F 32 2.0
>At4g03735.F
Length = 342
Score = 533 bits (269), Expect = e-151
Identities = 269/269 (100%)
Strand = Plus / Plus
Query: 1 tcgttgcaacgtccatggaccatgataacattaaagcaaacaagagagaaggcaccttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tcgttgcaacgtccatggaccatgataacattaaagcaaacaagagagaaggcaccttgg 63
Query: 61 acaacacaaaacacaccaaatgcaatgttgcgcgagattgattgtgccactagggcagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 acaacacaaaacacaccaaatgcaatgttgcgcgagattgattgtgccactagggcagat 123
Query: 121 aaaccaatccaaagaaaggctatcgagatagaggtgacaaagcaccaaactgacgagccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aaaccaatccaaagaaaggctatcgagatagaggtgacaaagcaccaaactgacgagccg 183
Query: 181 ttgaaattcaaaccaacaaacgtggttctagattggaaacaacttggactggccttaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ttgaaattcaaaccaacaaacgtggttctagattggaaacaacttggactggccttaaac 243
Query: 241 acaggcatagtgacgccggagaagtatcc 269
|||||||||||||||||||||||||||||
Sbjct: 244 acaggcatagtgacgccggagaagtatcc 272
>PTA.sd.3147.C1 nseq=9
Length = 1843
Score = 36.2 bits (18), Expect = 0.13
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 69 aaacacaccaaatgcaat 86
||||||||||||||||||
Sbjct: 1713 aaacacaccaaatgcaat 1696
>PTA.sd.12758.C1 nseq=20
Length = 2787
Score = 36.2 bits (18), Expect = 0.13
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 198 aaacgtggttctagattg 215
||||||||||||||||||
Sbjct: 1921 aaacgtggttctagattg 1938
>PTA.sd.12483.C1 nseq=3
Length = 1562
Score = 34.2 bits (17), Expect = 0.50
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 121 aaaccaatccaaagaaa 137
|||||||||||||||||
Sbjct: 809 aaaccaatccaaagaaa 793
>PTA.sd.8398.C1 nseq=6
Length = 1477
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 210 agattggaaacaactt 225
||||||||||||||||
Sbjct: 878 agattggaaacaactt 893
>PTA.sd.8116.C1 nseq=7
Length = 1999
Score = 32.2 bits (16), Expect = 2.0
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 124 ccaatccaaagaaaggctat 143
|||||||||||| |||||||
Sbjct: 612 ccaatccaaagacaggctat 631
>PTA.sd.658.C1 nseq=11
Length = 1611
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 97 attgattgtgccacta 112
||||||||||||||||
Sbjct: 994 attgattgtgccacta 1009
>PTA.sd.547.C1 nseq=2
Length = 2234
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 189 caaaccaacaaacgtg 204
||||||||||||||||
Sbjct: 1436 caaaccaacaaacgtg 1421
>PTA.sd.2459.C1 nseq=93
Length = 1039
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 60 gacaacacaaaacaca 75
||||||||||||||||
Sbjct: 2 gacaacacaaaacaca 17
>PTA.sd.17824.C1 nseq=15
Length = 1773
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 60 gacaacacaaaacaca 75
||||||||||||||||
Sbjct: 264 gacaacacaaaacaca 249
>PTA.sd.1662.C1 nseq=33
Length = 752
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 212 attggaaacaacttgg 227
||||||||||||||||
Sbjct: 429 attggaaacaacttgg 414
>At4g29920.F
Length = 3054
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 182 tgaaattcaaaccaac 197
||||||||||||||||
Sbjct: 967 tgaaattcaaaccaac 952
>At4g11940.F
Length = 795
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 117 agataaaccaatccaa 132
||||||||||||||||
Sbjct: 45 agataaaccaatccaa 60
>At1g59930.F
Length = 399
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 136 aaggctatcgagatag 151
||||||||||||||||
Sbjct: 198 aaggctatcgagatag 183
>At1g59920.F
Length = 399
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 136 aaggctatcgagatag 151
||||||||||||||||
Sbjct: 198 aaggctatcgagatag 183
>At1g69550.F PTA.sd.3834.singlet
Length = 4197
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 182 tgaaattcaaaccaa 196
|||||||||||||||
Sbjct: 923 tgaaattcaaaccaa 937
>PTA.sd.9677.C1 nseq=5
Length = 813
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 139 gctatcgagatagag 153
|||||||||||||||
Sbjct: 83 gctatcgagatagag 69
>PTA.sd.9471.C1 nseq=17
Length = 1228
Score = 30.2 bits (15), Expect = 7.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 181 ttgaaattcaaaccaacaa 199
|||||| ||||||||||||
Sbjct: 262 ttgaaaatcaaaccaacaa 244
>PTA.sd.899.C1 nseq=4
Length = 1883
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 68 aaaacacaccaaatg 82
|||||||||||||||
Sbjct: 951 aaaacacaccaaatg 937
>PTA.sd.8557.C1 nseq=23
Length = 881
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 176 agccgttgaaattca 190
|||||||||||||||
Sbjct: 597 agccgttgaaattca 611
>PTA.sd.5967.C1 nseq=35
Length = 1785
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 119 ataaaccaatccaaa 133
|||||||||||||||
Sbjct: 766 ataaaccaatccaaa 752
>PTA.sd.5459.C1 nseq=4
Length = 1989
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 34 aagcaaacaagagag 48
|||||||||||||||
Sbjct: 1309 aagcaaacaagagag 1295
>PTA.sd.4785.C1 nseq=12
Length = 3658
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 249 agtgacgccggagaa 263
|||||||||||||||
Sbjct: 263 agtgacgccggagaa 249
>PTA.sd.4587.C1 nseq=7
Length = 2456
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 155 tgacaaagcaccaaa 169
|||||||||||||||
Sbjct: 567 tgacaaagcaccaaa 581
>PTA.sd.3931.C1 nseq=2
Length = 730
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 38 aaacaagagagaagg 52
|||||||||||||||
Sbjct: 55 aaacaagagagaagg 41
>PTA.sd.3602.C1 nseq=7
Length = 2770
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 159 aaagcaccaaactga 173
|||||||||||||||
Sbjct: 347 aaagcaccaaactga 333
>PTA.sd.3520.C1 nseq=4
Length = 1236
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 64 acacaaaacacacca 78
|||||||||||||||
Sbjct: 1110 acacaaaacacacca 1096
>PTA.sd.3519.C1 nseq=2
Length = 447
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 64 acacaaaacacacca 78
|||||||||||||||
Sbjct: 342 acacaaaacacacca 328
>PTA.sd.2550.C1 nseq=8
Length = 973
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 130 caaagaaaggctatc 144
|||||||||||||||
Sbjct: 722 caaagaaaggctatc 736
>PTA.sd.1978.C1 nseq=52
Length = 878
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 26 taacattaaagcaaa 40
|||||||||||||||
Sbjct: 844 taacattaaagcaaa 830
>PTA.sd.16825.C1 nseq=15
Length = 1036
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 118 gataaaccaatccaa 132
|||||||||||||||
Sbjct: 853 gataaaccaatccaa 867
>PTA.sd.15942.C1 nseq=9
Length = 4172
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 159 aaagcaccaaactga 173
|||||||||||||||
Sbjct: 1216 aaagcaccaaactga 1202
>PTA.sd.15516.C1 nseq=15
Length = 820
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 57 ttggacaacacaaaa 71
|||||||||||||||
Sbjct: 710 ttggacaacacaaaa 696
>PTA.sd.14432.C1 nseq=7
Length = 1439
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 107 ccactagggcagata 121
|||||||||||||||
Sbjct: 1204 ccactagggcagata 1190
>PTA.sd.13571.C1 nseq=17
Length = 1262
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 121 aaaccaatccaaaga 135
|||||||||||||||
Sbjct: 1130 aaaccaatccaaaga 1144
>PTA.sd.11464.C1 nseq=16
Length = 2502
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 249 agtgacgccggagaa 263
|||||||||||||||
Sbjct: 426 agtgacgccggagaa 440
>PTA.sd.10114.C1 nseq=15
Length = 1503
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 63 aacacaaaacacacc 77
|||||||||||||||
Sbjct: 1313 aacacaaaacacacc 1299
>At5g06940.F
Length = 2619
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 188 tcaaaccaacaaacg 202
|||||||||||||||
Sbjct: 730 tcaaaccaacaaacg 716
>At4g35540.F
Length = 1584
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 29 cattaaagcaaacaa 43
|||||||||||||||
Sbjct: 864 cattaaagcaaacaa 850
>At4g20340.F
Length = 1584
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 146 agatagaggtgacaa 160
|||||||||||||||
Sbjct: 639 agatagaggtgacaa 653
>At3g52020.F
Length = 1506
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 122 aaccaatccaaagaa 136
|||||||||||||||
Sbjct: 1009 aaccaatccaaagaa 1023
>At3g03510.F
Length = 1455
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 38 aaacaagagagaagg 52
|||||||||||||||
Sbjct: 561 aaacaagagagaagg 575
>At2g35540.F
Length = 1728
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 atccaaagaaaggct 141
|||||||||||||||
Sbjct: 1382 atccaaagaaaggct 1396
>At1g79400.F
Length = 2352
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 38 aaacaagagagaagg 52
|||||||||||||||
Sbjct: 1235 aaacaagagagaagg 1249
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 195 aacaaacgtggttct 209
|||||||||||||||
Sbjct: 573 aacaaacgtggttct 587
>At1g53550.F
Length = 1227
Score = 30.2 bits (15), Expect = 7.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 25 ataacattaaagcaaacaa 43
||||||| |||||||||||
Sbjct: 788 ataacatcaaagcaaacaa 770
>At1g28327.F
Length = 855
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 57 ttggacaacacaaaa 71
|||||||||||||||
Sbjct: 518 ttggacaacacaaaa 532
>At1g22960.F
Length = 2157
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 37 caaacaagagagaag 51
|||||||||||||||
Sbjct: 1192 caaacaagagagaag 1178
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 269
length of database: 39,126,732
effective HSP length: 16
effective length of query: 253
effective length of database: 38,700,540
effective search space: 9791236620
effective search space used: 9791236620
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)