BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_19543
(270 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g12280.F 535 e-152
PTA.sd.2703.C1 nseq=43 402 e-112
At2g12200.F 281 1e-75
At2g12230.F 125 2e-28
PTA.sd.11665.C1 nseq=7 40 0.008
PTA.sd.17388.C1 nseq=9 36 0.13
PTA.sd.1393.C2 nseq=19 36 0.13
PTA.sd.16182.C1 nseq=13 34 0.50
PTA.sd.15589.C1 nseq=9 34 0.50
PTA.sd.15334.C1 nseq=34 34 0.50
PTA.sd.11440.C1 nseq=5 34 0.50
PTA.sd.9694.C1 nseq=6 32 2.0
PTA.sd.9693.C1 nseq=10 32 2.0
PTA.sd.9683.C1 nseq=7 32 2.0
PTA.sd.8111.C1 nseq=3 32 2.0
>At2g12280.F
Length = 273
Score = 535 bits (270), Expect = e-152
Identities = 270/270 (100%)
Strand = Plus / Plus
Query: 1 gtacacacaacaaggcttctcgaatcttcccatatgcatgtcgaaaacgcagtactcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gtacacacaacaaggcttctcgaatcttcccatatgcatgtcgaaaacgcagtactcatt 62
Query: 61 ctcacatgatgcatcaaagaaaggagcaccttcagggtttgtattgccaattcgggatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ctcacatgatgcatcaaagaaaggagcaccttcagggtttgtattgccaattcgggatgt 122
Query: 121 tagaggaagcattggagctggtttcatatatccactggttggtacaatgagtacaatgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tagaggaagcattggagctggtttcatatatccactggttggtacaatgagtacaatgcc 182
Query: 181 tggacttcctacaagaccttgtttctatgagattgatatcagtcaaagcttcaaggcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tggacttcctacaagaccttgtttctatgagattgatatcagtcaaagcttcaaggcttc 242
Query: 241 ccttcaccgtcgttcctcacttcctcaata 270
||||||||||||||||||||||||||||||
Sbjct: 243 ccttcaccgtcgttcctcacttcctcaata 272
>PTA.sd.2703.C1 nseq=43
Length = 2257
Score = 402 bits (203), Expect = e-112
Identities = 215/219 (98%)
Strand = Plus / Plus
Query: 1 gtacacacaacaaggcttctcgaatcttcccatatgcatgtcgaaaacgcagtactcatt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1751 gtacacacaacaaggcttctcgaatcttcccatatgcatgtcgaaaacacagtactcatt 1810
Query: 61 ctcacatgatgcatcaaagaaaggagcaccttcagggtttgtattgccaattcgggatgt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1811 ctcacatgatgcatcaaagaaaggagcaccttcagggtttgtattgccaattagggatgt 1870
Query: 121 tagaggaagcattggagctggtttcatatatccactggttggtacaatgagtacaatgcc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1871 aagaggaagcattggagctggtttcatatatccactggttggtacaatgagtacaatgcc 1930
Query: 181 tggacttcctacaagaccttgtttctatgagattgatat 219
||||||||||||||||||||||||||| |||||||||||
Sbjct: 1931 tggacttcctacaagaccttgtttctacgagattgatat 1969
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 222 gtcaaagcttcaaggcttcccttcaccgtcgttcctcacttcctcaata 270
|||||||||||||||||| |||||| ||||||| ||||||||| |||||
Sbjct: 2020 gtcaaagcttcaaggctttccttcatcgtcgtttctcacttccacaata 2068
>At2g12200.F
Length = 192
Score = 281 bits (142), Expect = 1e-75
Identities = 148/150 (98%)
Strand = Plus / Plus
Query: 1 gtacacacaacaaggcttctcgaatcttcccatatgcatgtcgaaaacgcagtactcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gtacacacaacaaggcttctcgaatcttcccatatgcatgtcgaaaacgcagtactcatt 62
Query: 61 ctcacatgatgcatcaaagaaaggagcaccttcagggtttgtattgccaattcgggatgt 120
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 63 ctcacatgatacatcaaagaaaagagcaccttcagggtttgtattgccaattcgggatgt 122
Query: 121 tagaggaagcattggagctggtttcatata 150
||||||||||||||||||||||||||||||
Sbjct: 123 tagaggaagcattggagctggtttcatata 152
>At2g12230.F
Length = 84
Score = 125 bits (63), Expect = 2e-28
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 148 atatccactggttggtacaatgagtacaatgcctggacttcctacaagaccttgtttcta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 atatccactggttggtacaatgagtacaatgcctggacttcctacaagaccttgtttcta 81
Query: 208 tga 210
|||
Sbjct: 82 tga 84
>PTA.sd.11665.C1 nseq=7
Length = 1682
Score = 40.1 bits (20), Expect = 0.008
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 acgcagtactcattctcaca 66
||||||||||||||||||||
Sbjct: 59 acgcagtactcattctcaca 78
>PTA.sd.17388.C1 nseq=9
Length = 1970
Score = 36.2 bits (18), Expect = 0.13
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 241 ccttcaccgtcgttcctcacttcctc 266
||||||||||| |||||| |||||||
Sbjct: 288 ccttcaccgtccttcctctcttcctc 263
>PTA.sd.1393.C2 nseq=19
Length = 1511
Score = 36.2 bits (18), Expect = 0.13
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 189 ctacaagaccttgtttct 206
||||||||||||||||||
Sbjct: 976 ctacaagaccttgtttct 993
>PTA.sd.16182.C1 nseq=13
Length = 1648
Score = 34.2 bits (17), Expect = 0.50
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 120 ttagaggaagcattgga 136
|||||||||||||||||
Sbjct: 86 ttagaggaagcattgga 102
>PTA.sd.15589.C1 nseq=9
Length = 1525
Score = 34.2 bits (17), Expect = 0.50
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 58 attctcacatgatgcatcaaa 78
|||||||||||||| ||||||
Sbjct: 1452 attctcacatgatgaatcaaa 1472
>PTA.sd.15334.C1 nseq=34
Length = 2787
Score = 34.2 bits (17), Expect = 0.50
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 74 tcaaagaaaggagcaccttca 94
|||||||||||| ||||||||
Sbjct: 300 tcaaagaaaggaccaccttca 280
>PTA.sd.11440.C1 nseq=5
Length = 1233
Score = 34.2 bits (17), Expect = 0.50
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 253 ttcctcacttcctcaat 269
|||||||||||||||||
Sbjct: 204 ttcctcacttcctcaat 188
>PTA.sd.9694.C1 nseq=6
Length = 3898
Score = 32.2 bits (16), Expect = 2.0
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 192 caagaccttgtttctatgag 211
|||||||||||||| |||||
Sbjct: 1290 caagaccttgtttcgatgag 1309
>PTA.sd.9693.C1 nseq=10
Length = 4147
Score = 32.2 bits (16), Expect = 2.0
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 192 caagaccttgtttctatgag 211
|||||||||||||| |||||
Sbjct: 1115 caagaccttgtttcgatgag 1134
>PTA.sd.9683.C1 nseq=7
Length = 4049
Score = 32.2 bits (16), Expect = 2.0
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 192 caagaccttgtttctatgag 211
|||||||||||||| |||||
Sbjct: 1144 caagaccttgtttcgatgag 1163
>PTA.sd.8111.C1 nseq=3
Length = 2496
Score = 32.2 bits (16), Expect = 2.0
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 76 aaagaaaggagcaccttcag 95
|||||||| |||||||||||
Sbjct: 1987 aaagaaagaagcaccttcag 2006
>PTA.sd.18001.C1 nseq=2
Length = 1692
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 69 atgcatcaaagaaagg 84
||||||||||||||||
Sbjct: 1397 atgcatcaaagaaagg 1412
>PTA.sd.16963.C1 nseq=2
Length = 3288
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 223 tcaaagcttcaaggct 238
||||||||||||||||
Sbjct: 478 tcaaagcttcaaggct 463
>PTA.sd.15958.C1 nseq=2
Length = 1725
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 156 tggttggtacaatgag 171
||||||||||||||||
Sbjct: 105 tggttggtacaatgag 120
>PTA.sd.11372.C1 nseq=10
Length = 2552
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 209 gagattgatatcagtc 224
||||||||||||||||
Sbjct: 1360 gagattgatatcagtc 1345
>PTA.sd.10633.C1 nseq=6
Length = 2478
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 120 ttagaggaagcattgg 135
||||||||||||||||
Sbjct: 2030 ttagaggaagcattgg 2015
>At3g03130.F
Length = 1563
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 68 gatgcatcaaagaaag 83
||||||||||||||||
Sbjct: 764 gatgcatcaaagaaag 749
>At1g68030.F
Length = 945
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 56 tcattctcacatgatg 71
||||||||||||||||
Sbjct: 455 tcattctcacatgatg 440
>PTA.sd.9855.C2 nseq=17
Length = 683
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 133 tggagctggtttcat 147
|||||||||||||||
Sbjct: 404 tggagctggtttcat 418
>PTA.sd.9687.C1 nseq=4
Length = 1540
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 atgagattgatatca 221
|||||||||||||||
Sbjct: 393 atgagattgatatca 407
>PTA.sd.9516.C1 nseq=5
Length = 1230
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 74 tcaaagaaaggagca 88
|||||||||||||||
Sbjct: 418 tcaaagaaaggagca 432
>PTA.sd.9515.C1 nseq=5
Length = 1255
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 74 tcaaagaaaggagca 88
|||||||||||||||
Sbjct: 398 tcaaagaaaggagca 412
>PTA.sd.8907.C1 nseq=41
Length = 1643
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 12 aaggcttctcgaatc 26
|||||||||||||||
Sbjct: 248 aaggcttctcgaatc 234
>PTA.sd.7027.C1 nseq=16
Length = 1839
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 7 acaacaaggcttctc 21
|||||||||||||||
Sbjct: 708 acaacaaggcttctc 694
>PTA.sd.6903.C1 nseq=32
Length = 1157
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 126 gaagcattggagctg 140
|||||||||||||||
Sbjct: 259 gaagcattggagctg 245
>PTA.sd.6537.C1 nseq=6
Length = 2601
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 234 aggcttcccttcacc 248
|||||||||||||||
Sbjct: 915 aggcttcccttcacc 901
>PTA.sd.5890.C1 nseq=8
Length = 1635
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 117 atgttagaggaagca 131
|||||||||||||||
Sbjct: 1035 atgttagaggaagca 1049
>PTA.sd.3994.C1 nseq=8
Length = 1641
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 66 atgatgcatcaaaga 80
|||||||||||||||
Sbjct: 636 atgatgcatcaaaga 622
>PTA.sd.3036.C1 nseq=2
Length = 1144
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 125 ggaagcattggagct 139
|||||||||||||||
Sbjct: 517 ggaagcattggagct 531
>PTA.sd.3024.C1 nseq=14
Length = 1350
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 123 gaggaagcattggag 137
|||||||||||||||
Sbjct: 838 gaggaagcattggag 852
>PTA.sd.3000.C1 nseq=4
Length = 1091
Score = 30.2 bits (15), Expect = 7.8
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 242 cttcaccgtcgttcctcac 260
|||| ||||||||||||||
Sbjct: 35 cttctccgtcgttcctcac 53
>PTA.sd.2212.C1 nseq=3
Length = 1840
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 123 gaggaagcattggag 137
|||||||||||||||
Sbjct: 1162 gaggaagcattggag 1176
>PTA.sd.1809.C1 nseq=2
Length = 1184
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 253 ttcctcacttcctca 267
|||||||||||||||
Sbjct: 236 ttcctcacttcctca 222
>PTA.sd.17514.C1 nseq=10
Length = 1196
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 190 tacaagaccttgttt 204
|||||||||||||||
Sbjct: 661 tacaagaccttgttt 647
>PTA.sd.17511.C1 nseq=2
Length = 1100
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 135 gagctggtttcatat 149
|||||||||||||||
Sbjct: 247 gagctggtttcatat 261
>PTA.sd.17510.C1 nseq=2
Length = 1029
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 135 gagctggtttcatat 149
|||||||||||||||
Sbjct: 243 gagctggtttcatat 257
>PTA.sd.1707.C1 nseq=7
Length = 1454
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 16 cttctcgaatcttcc 30
|||||||||||||||
Sbjct: 248 cttctcgaatcttcc 234
>PTA.sd.16695.C1 nseq=7
Length = 2034
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 206 tatgagattgatatc 220
|||||||||||||||
Sbjct: 1324 tatgagattgatatc 1338
>PTA.sd.15492.C1 nseq=11
Length = 1797
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 192 caagaccttgtttct 206
|||||||||||||||
Sbjct: 323 caagaccttgtttct 309
>PTA.sd.14516.C1 nseq=105
Length = 1631
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 15 gcttctcgaatcttc 29
|||||||||||||||
Sbjct: 59 gcttctcgaatcttc 73
>PTA.sd.13964.C1 nseq=8
Length = 645
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 202 tttctatgagattga 216
|||||||||||||||
Sbjct: 381 tttctatgagattga 395
>PTA.sd.12470.C1 nseq=2
Length = 3829
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 96 ggtttgtattgccaa 110
|||||||||||||||
Sbjct: 231 ggtttgtattgccaa 245
>PTA.sd.11694.C1 nseq=4
Length = 537
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 228 gcttcaaggcttccc 242
|||||||||||||||
Sbjct: 327 gcttcaaggcttccc 341
>PTA.sd.11100.C1 nseq=2
Length = 832
Score = 30.2 bits (15), Expect = 7.8
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 118 tgttagaggaagcattgga 136
||||| |||||||||||||
Sbjct: 29 tgttacaggaagcattgga 47
>PTA.sd.11064.C1 nseq=4
Length = 4614
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 115 ggatgttagaggaag 129
|||||||||||||||
Sbjct: 1967 ggatgttagaggaag 1981
>PTA.sd.10138.C1 nseq=5
Length = 1770
Score = 30.2 bits (15), Expect = 7.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 123 gaggaagcattggag 137
|||||||||||||||
Sbjct: 326 gaggaagcattggag 312
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 270
length of database: 39,126,732
effective HSP length: 16
effective length of query: 254
effective length of database: 38,700,540
effective search space: 9829937160
effective search space used: 9829937160
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)