BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_18195
(298 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g42100.F 591 e-168
At5g32630.F 232 1e-60
At3g13250.F 125 2e-28
At2g14480.F 101 3e-21
At3g31440.F 94 7e-19
At4g04300.F 90 1e-17
At5g28230.F 88 4e-17
At1g35940.F 86 2e-16
At5g37110.F 48 4e-05
At5g34960.F 40 0.009
At3g31980.F 40 0.009
PTA.sd.952.C1 nseq=5 36 0.14
PTA.sd.4733.C1 nseq=5 34 0.56
PTA.sd.4732.C1 nseq=10 34 0.56
PTA.sd.4540.C2 nseq=24 34 0.56
>At3g42100.F
Length = 5259
Score = 591 bits (298), Expect = e-168
Identities = 298/298 (100%)
Strand = Plus / Plus
Query: 1 ggcggtttaagtagcgaggaagctaaagagatacaacagttttctgattggttattggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4384 ggcggtttaagtagcgaggaagctaaagagatacaacagttttctgattggttattggct 4443
Query: 61 gtcggtgatggtaggattaatgagcctaatgatggagaggcacttattgatattccagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4444 gtcggtgatggtaggattaatgagcctaatgatggagaggcacttattgatattccagag 4503
Query: 121 gaattgttgattaaagaagcaggaaacccaatagaagctatcagtaaggaaatttatggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4504 gaattgttgattaaagaagcaggaaacccaatagaagctatcagtaaggaaatttatggg 4563
Query: 181 gatccgtcagaactgcatatgataaatgatcctaagtttttccaaaggagagctatttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4564 gatccgtcagaactgcatatgataaatgatcctaagtttttccaaaggagagctatttta 4623
Query: 241 gcaccaaccaatgaagacgtcaatactataaaccagtatatgctggaacatttgaaaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4624 gcaccaaccaatgaagacgtcaatactataaaccagtatatgctggaacatttgaaaa 4681
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 ttgattaaagaagca 141
|||||||||||||||
Sbjct: 4105 ttgattaaagaagca 4119
>At5g32630.F
Length = 2571
Score = 232 bits (117), Expect = 1e-60
Identities = 147/157 (93%)
Strand = Plus / Plus
Query: 2 gcggtttaagtagcgaggaagctaaagagatacaacagttttctgattggttattggctg 61
||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||| ||
Sbjct: 2015 gcggtttaagtgttgaggaagctaaagatatacaactgttttatgattggttattggttg 2074
Query: 62 tcggtgatggtaggattaatgagcctaatgatggagaggcacttattgatattccagagg 121
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2075 ttggtgatggtaggattaatgagcctaatgatggagaggcacttattgatattccagagg 2134
Query: 122 aattgttgattaaagaagcaggaaacccaatagaagc 158
|||||||||||| |||||||||||||||||| |||||
Sbjct: 2135 aattgttgattacagaagcaggaaacccaattgaagc 2171
>At3g13250.F
Length = 4260
Score = 125 bits (63), Expect = 2e-28
Identities = 141/167 (84%)
Strand = Plus / Plus
Query: 19 gaagctaaagagatacaacagttttctgattggttattggctgtcggtgatggtaggatt 78
||||||||||| || ||| | ||||| ||||||||||||||||| |||||||| ||| |
Sbjct: 3406 gaagctaaagaaatccaagaattttccgattggttattggctgttggtgatggaagggtc 3465
Query: 79 aatgagcctaatgatggagaggcacttattgatattccagaggaattgttgattaaagaa 138
||||||||||||||||| |||| | |||||||| || || |||||||||||| |||||
Sbjct: 3466 aatgagcctaatgatggtgaggtgataattgatatacctgaagaattgttgattcaagaa 3525
Query: 139 gcaggaaacccaatagaagctatcagtaaggaaatttatggggatcc 185
|||| || || ||||||||||| |||| ||||||||||| |||||
Sbjct: 3526 gcagataatcctatagaagctattagtagagaaatttatggagatcc 3572
>At2g14480.F
Length = 3798
Score = 101 bits (51), Expect = 3e-21
Identities = 138/167 (82%)
Strand = Plus / Plus
Query: 19 gaagctaaagagatacaacagttttctgattggttattggctgtcggtgatggtaggatt 78
||||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2992 gaagctaaagaaattcaagagttttctgattggttattggctgttggtgatggtaggata 3051
Query: 79 aatgagcctaatgatggagaggcacttattgatattccagaggaattgttgattaaagaa 138
|||||| |||| || || | ||| | || ||||||||||| || |||||||||| |
Sbjct: 3052 aatgagtctaacgacggtgtggctataatagatattccagaagatttgttgattaccaac 3111
Query: 139 gcaggaaacccaatagaagctatcagtaaggaaatttatggggatcc 185
|||| || ||||||||| | |||| || ||||||||||| |||||
Sbjct: 3112 gcagacaagccaatagaatcgatcaccaatgaaatttatggagatcc 3158
>At3g31440.F
Length = 1611
Score = 93.7 bits (47), Expect = 7e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 19 gaagctaaagagatacaacagttttctgattggttattggctgtcggtgatggtaggatt 78
||||||||||| || || ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 826 gaagctaaagaaattcatgagttttctgattggttattggctgttggtgatggtaggata 885
Query: 79 aatgagcctaa 89
|||||||||||
Sbjct: 886 aatgagcctaa 896
>At4g04300.F
Length = 861
Score = 89.7 bits (45), Expect = 1e-17
Identities = 132/161 (81%)
Strand = Plus / Plus
Query: 19 gaagctaaagagatacaacagttttctgattggttattggctgtcggtgatggtaggatt 78
||||||||||| || ||| | |||| ||||||||||||| ||| |||||||| ||| |
Sbjct: 640 gaagctaaagaaatccaagaatttttcgattggttattggttgttggtgatggaagggtc 699
Query: 79 aatgagcctaatgatggagaggcacttattgatattccagaggaattgttgattaaagaa 138
||||||||||||||||| ||||| || || ||||| || || || ||||||||| |||||
Sbjct: 700 aatgagcctaatgatggtgaggcgctaatagatatacctgaagagttgttgattcaagaa 759
Query: 139 gcaggaaacccaatagaagctatcagtaaggaaatttatgg 179
|||| | || ||||||||||| |||| ||||| |||||
Sbjct: 760 gcagatattcctatagaagctattagtagagaaatatatgg 800
>At5g28230.F
Length = 516
Score = 87.7 bits (44), Expect = 4e-17
Identities = 104/124 (83%)
Strand = Plus / Plus
Query: 19 gaagctaaagagatacaacagttttctgattggttattggctgtcggtgatggtaggatt 78
||||||||||| || ||| | |||| ||||||||||||| ||| |||||||| ||| |
Sbjct: 382 gaagctaaagaaatccaagaatttttcgattggttattggatgttggtgatggaagggtc 441
Query: 79 aatgagcctaatgatggagaggcacttattgatattccagaggaattgttgattaaagaa 138
||||||||||||||||| ||| | || || ||||| || || |||||||||||| |||||
Sbjct: 442 aatgagcctaatgatggtgagacgctaatagatatacctgaagaattgttgattcaagaa 501
Query: 139 gcag 142
||||
Sbjct: 502 gcag 505
>At1g35940.F
Length = 5037
Score = 85.7 bits (43), Expect = 2e-16
Identities = 136/167 (81%)
Strand = Plus / Plus
Query: 19 gaagctaaagagatacaacagttttctgattggttattggctgtcggtgatggtaggatt 78
||||||||||| || ||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 4180 gaagctaaagaaattcaagagttttctgattggttattggctgttagtgatggtaggata 4239
Query: 79 aatgagcctaatgatggagaggcacttattgatattccagaggaattgttgattaaagaa 138
|| |||||||| || || | ||| || ||||||||||| || |||||||||| |
Sbjct: 4240 aacgagcctaacgacggtgtggctacaatagatattccagaagatttgttgattaccaac 4299
Query: 139 gcaggaaacccaatagaagctatcagtaaggaaatttatggggatcc 185
|||| || ||||||||| | |||| || ||||||||||| |||||
Sbjct: 4300 gcagacaagccaatagaaacgatcaccaatgaaatttatggagatcc 4346
>At5g37110.F
Length = 3924
Score = 48.1 bits (24), Expect = 4e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 38 agttttctgattggttattggctgtcggtgatggtaggattaatgagcctaatgatggag 97
||||||| || ||| |||| || || ||||||||||| ||| ||||||||||||||| |
Sbjct: 3119 agttttcagagtggatattagcagtaggtgatggtagaattgttgagcctaatgatgggg 3178
Query: 98 aggc 101
||||
Sbjct: 3179 aggc 3182
>At5g34960.F
Length = 3102
Score = 40.1 bits (20), Expect = 0.009
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 229 agagctattttagcaccaaccaatgaagacgt 260
|||||||| ||||||||||| ||||| |||||
Sbjct: 2455 agagctatattagcaccaacgaatgaggacgt 2486
Score = 38.2 bits (19), Expect = 0.036
Identities = 46/55 (83%)
Strand = Plus / Plus
Query: 79 aatgagcctaatgatggagaggcacttattgatattccagaggaattgttgatta 133
|||||||||||||| || | ||| | || ||||||||||| || ||||||||||
Sbjct: 2305 aatgagcctaatgacggtgtggctataatagatattccagaagatttgttgatta 2359
>At3g31980.F
Length = 3300
Score = 40.1 bits (20), Expect = 0.009
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 205 aatgatcctaagtttttccaaaggagagctat 236
||||||||||| ||||||||| |||||||||
Sbjct: 2626 aatgatcctaaatttttccaacagagagctat 2657
>PTA.sd.952.C1 nseq=5
Length = 1217
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 4 ggtttaagtagcgaggaa 21
||||||||||||||||||
Sbjct: 473 ggtttaagtagcgaggaa 456
>PTA.sd.4733.C1 nseq=5
Length = 483
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 107 ttgatattccagaggaa 123
|||||||||||||||||
Sbjct: 176 ttgatattccagaggaa 192
>PTA.sd.4732.C1 nseq=10
Length = 1387
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 107 ttgatattccagaggaa 123
|||||||||||||||||
Sbjct: 1080 ttgatattccagaggaa 1096
>PTA.sd.4540.C2 nseq=24
Length = 858
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 91 gatggagaggcacttat 107
|||||||||||||||||
Sbjct: 225 gatggagaggcacttat 209
>PTA.sd.14513.C1 nseq=5
Length = 729
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 195 gcatatgataaatgatc 211
|||||||||||||||||
Sbjct: 591 gcatatgataaatgatc 575
>PTA.sd.11695.C1 nseq=6
Length = 2320
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 11 gtagcgaggaagctaaa 27
|||||||||||||||||
Sbjct: 1822 gtagcgaggaagctaaa 1806
>At2g05080.F
Length = 3660
Score = 34.2 bits (17), Expect = 0.56
Identities = 41/49 (83%)
Strand = Plus / Plus
Query: 53 tattggctgtcggtgatggtaggattaatgagcctaatgatggagaggc 101
||||||| || ||||| ||||| ||| |||||||||||||| |||||
Sbjct: 2819 tattggcagtaggtgacggtagaattggagagcctaatgatggtgaggc 2867
>PTA.sd.9115.C1 nseq=12
Length = 704
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 25 aaagagatacaacagt 40
||||||||||||||||
Sbjct: 644 aaagagatacaacagt 629
>PTA.sd.5197.C1 nseq=10
Length = 3013
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 243 accaaccaatgaagac 258
||||||||||||||||
Sbjct: 665 accaaccaatgaagac 680
>PTA.sd.17589.C1 nseq=3
Length = 2902
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 17 aggaagctaaagagat 32
||||||||||||||||
Sbjct: 2305 aggaagctaaagagat 2320
>PTA.sd.13541.C1 nseq=5
Length = 11389
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 132 taaagaagcaggaaac 147
||||||||||||||||
Sbjct: 9593 taaagaagcaggaaac 9578
>At4g13210.F
Length = 1257
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 140 caggaaacccaataga 155
||||||||||||||||
Sbjct: 203 caggaaacccaataga 218
>At4g08395.F
Length = 699
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 217 tttttccaaaggagag 232
||||||||||||||||
Sbjct: 21 tttttccaaaggagag 36
>At3g55930.F
Length = 1314
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 11 gtagcgaggaagctaa 26
||||||||||||||||
Sbjct: 847 gtagcgaggaagctaa 862
>At3g42420.F
Length = 3057
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 142 ggaaacccaatagaagctat 161
||||| ||||||||||||||
Sbjct: 2509 ggaaatccaatagaagctat 2528
>At3g30560.F
Length = 4422
Score = 32.2 bits (16), Expect = 2.2
Identities = 28/32 (87%)
Strand = Plus / Plus
Query: 208 gatcctaagtttttccaaaggagagctatttt 239
||||| |||||||||||| |||||||||||
Sbjct: 3757 gatccaaagtttttccaagacagagctatttt 3788
>At3g19280.F
Length = 1506
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 98 aggcacttattgatat 113
||||||||||||||||
Sbjct: 1055 aggcacttattgatat 1070
>PTA.sd.9199.C1 nseq=11
Length = 1076
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 243 accaaccaatgaaga 257
|||||||||||||||
Sbjct: 652 accaaccaatgaaga 666
>PTA.sd.8863.C1 nseq=10
Length = 2857
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 185 cgtcagaactgcata 199
|||||||||||||||
Sbjct: 2173 cgtcagaactgcata 2187
>PTA.sd.864.C1 nseq=91
Length = 1585
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 ggtaggattaatgag 84
|||||||||||||||
Sbjct: 19 ggtaggattaatgag 5
>PTA.sd.8505.C1 nseq=3
Length = 3865
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 18 ggaagctaaagagat 32
|||||||||||||||
Sbjct: 987 ggaagctaaagagat 1001
>PTA.sd.8431.C1 nseq=46
Length = 2653
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 16 gaggaagctaaagagatac 34
||||||| |||||||||||
Sbjct: 402 gaggaagataaagagatac 420
>PTA.sd.8332.C1 nseq=3
Length = 877
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 204 aaatgatcctaagtt 218
|||||||||||||||
Sbjct: 422 aaatgatcctaagtt 408
>PTA.sd.768.C1 nseq=25
Length = 4395
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 237 tttagcaccaaccaa 251
|||||||||||||||
Sbjct: 3291 tttagcaccaaccaa 3277
>PTA.sd.7258.C1 nseq=12
Length = 1256
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 224 aaaggagagctattt 238
|||||||||||||||
Sbjct: 669 aaaggagagctattt 683
>PTA.sd.6422.C1 nseq=2
Length = 2233
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 250 aatgaagacgtcaat 264
|||||||||||||||
Sbjct: 1128 aatgaagacgtcaat 1114
>PTA.sd.5805.C1 nseq=11
Length = 2582
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 15 cgaggaagctaaaga 29
|||||||||||||||
Sbjct: 2051 cgaggaagctaaaga 2065
>PTA.sd.5316.C1 nseq=12
Length = 2012
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 32 tacaacagttttctgattg 50
|||||||||||| ||||||
Sbjct: 1952 tacaacagttttttgattg 1934
>PTA.sd.3839.C1 nseq=5
Length = 2761
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 aggaagctaaagaga 31
|||||||||||||||
Sbjct: 47 aggaagctaaagaga 33
>PTA.sd.3526.C1 nseq=10
Length = 998
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 213 taagtttttccaaag 227
|||||||||||||||
Sbjct: 774 taagtttttccaaag 788
>PTA.sd.3333.C1 nseq=10
Length = 1821
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 109 gatattccagaggaa 123
|||||||||||||||
Sbjct: 1568 gatattccagaggaa 1554
>PTA.sd.285.C1 nseq=4
Length = 4100
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 194 tgcatatgataaatg 208
|||||||||||||||
Sbjct: 1109 tgcatatgataaatg 1123
>PTA.sd.1980.C1 nseq=50
Length = 1366
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 24 taaagagatacaaca 38
|||||||||||||||
Sbjct: 1248 taaagagatacaaca 1234
>PTA.sd.17201.C1 nseq=7
Length = 1488
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 18 ggaagctaaagagat 32
|||||||||||||||
Sbjct: 897 ggaagctaaagagat 911
>PTA.sd.1583.C1 nseq=18
Length = 3275
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 16 gaggaagctaaagag 30
|||||||||||||||
Sbjct: 2161 gaggaagctaaagag 2175
>PTA.sd.15724.C1 nseq=3
Length = 1175
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 25 aaagagatacaacag 39
|||||||||||||||
Sbjct: 906 aaagagatacaacag 920
>PTA.sd.13316.C1 nseq=7
Length = 1430
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 16 gaggaagctaaagag 30
|||||||||||||||
Sbjct: 602 gaggaagctaaagag 616
>PTA.sd.12793.C1 nseq=5
Length = 2650
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 209 atcctaagtttttccaaag 227
||||| |||||||||||||
Sbjct: 1091 atcctgagtttttccaaag 1109
>PTA.sd.11260.C2 nseq=3
Length = 1335
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 116 cagaggaattgttga 130
|||||||||||||||
Sbjct: 974 cagaggaattgttga 988
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 298
length of database: 39,126,732
effective HSP length: 16
effective length of query: 282
effective length of database: 38,700,540
effective search space: 10913552280
effective search space used: 10913552280
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)