BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_17466
(294 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01560.F 583 e-166
PTA.sd.11172.C1 nseq=8 299 6e-81
PTA.sd.7265.C1 nseq=6 135 2e-31
PTA.sd.723.C1 nseq=7 58 4e-08
At1g07880.F 46 1e-04
PTA.sd.5240.C1 nseq=2 44 6e-04
PTA.sd.3160.C1 nseq=8 42 0.002
PTA.sd.7335.C1 nseq=6 40 0.009
PTA.sd.7085.C1 nseq=15 40 0.009
PTA.sd.11721.C1 nseq=17 38 0.035
At4g36450.F 38 0.035
PTA.sd.6383.C1 nseq=8 36 0.14
PTA.sd.16169.C1 nseq=4 34 0.55
PTA.sd.13373.C1 nseq=9 34 0.55
PTA.sd.11512.C1 nseq=4 34 0.55
>At1g01560.F
Length = 1110
Score = 583 bits (294), Expect = e-166
Identities = 294/294 (100%)
Strand = Plus / Plus
Query: 1 tcctgtatcagttgttgcgaggcctcaagtatgtgcattcagccaatgtactgcatcgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tcctgtatcagttgttgcgaggcctcaagtatgtgcattcagccaatgtactgcatcgtg 496
Query: 61 atttaaaaccgagtaacttgctcctgaatgcaaactgtgacctcaagattggggattttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atttaaaaccgagtaacttgctcctgaatgcaaactgtgacctcaagattggggattttg 556
Query: 121 ggcttgcgaggactaaatcagagacagacttcatgacagaatatgttgttacacgttggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggcttgcgaggactaaatcagagacagacttcatgacagaatatgttgttacacgttggt 616
Query: 181 accgagctccagagttgctccttaattgctcagaatacactgcagctatcgacatttggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 accgagctccagagttgctccttaattgctcagaatacactgcagctatcgacatttggt 676
Query: 241 ctgtcggttgtatactcggtgaaataatgacgcgggagccgttatttccgggca 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctgtcggttgtatactcggtgaaataatgacgcgggagccgttatttccgggca 730
>PTA.sd.11172.C1 nseq=8
Length = 1466
Score = 299 bits (151), Expect = 6e-81
Identities = 253/287 (88%)
Strand = Plus / Plus
Query: 3 ctgtatcagttgttgcgaggcctcaagtatgtgcattcagccaatgtactgcatcgtgat 62
||||||||||||||||| || ||||| ||||| |||||||| |||||| ||||||| |||
Sbjct: 572 ctgtatcagttgttgcgtgggctcaaatatgttcattcagctaatgtattgcatcgagat 631
Query: 63 ttaaaaccgagtaacttgctcctgaatgcaaactgtgacctcaagattggggattttggg 122
|| ||||| || || ||||||||||||||||| ||||| || ||| |||||||||| |||
Sbjct: 632 ttgaaacctagcaatttgctcctgaatgcaaattgtgatctaaagcttggggatttcggg 691
Query: 123 cttgcgaggactaaatcagagacagacttcatgacagaatatgttgttacacgttggtac 182
||||||||||| ||||| ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 692 cttgcgaggaccaaatccgagactgactttatgactgaatatgttgttacacgttggtat 751
Query: 183 cgagctccagagttgctccttaattgctcagaatacactgcagctatcgacatttggtct 242
|||||||||||| |||| ||||||||||| |||||||| ||||| || || |||||||||
Sbjct: 752 cgagctccagagctgctacttaattgctctgaatacacagcagcaattgatatttggtct 811
Query: 243 gtcggttgtatactcggtgaaataatgacgcgggagccgttatttcc 289
|||||||||||||||||||||| |||||| || ||||| || |||||
Sbjct: 812 gtcggttgtatactcggtgaaacaatgacacgagagcccttgtttcc 858
>PTA.sd.7265.C1 nseq=6
Length = 1325
Score = 135 bits (68), Expect = 2e-31
Identities = 143/168 (85%)
Strand = Plus / Plus
Query: 105 aagattggggattttgggcttgcgaggactaaatcagagacagacttcatgacagaatat 164
|||||||| |||||||||||||| || || | || || |||||||||||||| ||||||
Sbjct: 597 aagattggtgattttgggcttgcaagaacaacttccgacacagacttcatgactgaatat 656
Query: 165 gttgttacacgttggtaccgagctccagagttgctccttaattgctcagaatacactgca 224
|| ||||| ||||||||| | ||||| |||||||| ||||| |||||||| ||||| |||
Sbjct: 657 gtcgttacccgttggtacagggctcctgagttgcttcttaactgctcagagtacaccgca 716
Query: 225 gctatcgacatttggtctgtcggttgtatactcggtgaaataatgacg 272
||||| || ||||||||||| || || |||||||| ||||| ||||||
Sbjct: 717 gctattgatatttggtctgttggctgcatactcggcgaaatcatgacg 764
>PTA.sd.723.C1 nseq=7
Length = 1630
Score = 58.0 bits (29), Expect = 4e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 150 ttcatgacagaatatgttgttacacgttggtaccgagctccagag 194
|||||||| ||||||||||| || |||||||||||||| ||||||
Sbjct: 679 ttcatgactgaatatgttgtgactcgttggtaccgagccccagag 723
Score = 44.1 bits (22), Expect = 6e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 9 cagttgttgcgaggcctcaagtatgtgcattcagccaatgtactgcatcgtgatttaaaa 68
|||||| | ||||| ||||||||| | |||||||||||| | ||||| || ||||| |||
Sbjct: 535 cagttgcttcgagggctcaagtatattcattcagccaatatcctgcaccgagatttgaaa 594
Query: 69 cc 70
||
Sbjct: 595 cc 596
>At1g07880.F
Length = 1092
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 208 gctcagaatacactgcagctatcgacatttggtctgtcggttg 250
|||| |||||||| | |||||| |||||||||||||| |||||
Sbjct: 623 gctctgaatacacaggagctattgacatttggtctgttggttg 665
Score = 38.2 bits (19), Expect = 0.035
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 66 aaaccgagtaacttgctcctgaatgcaaactgtgacctcaagattggggattttgggct 124
|||||||| |||||| | |||||| | ||||||||||| || || | |||||||||||
Sbjct: 481 aaaccgagcaacttggttctgaatacgaactgtgacctgaaaatctgtgattttgggct 539
>PTA.sd.5240.C1 nseq=2
Length = 1295
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 150 ttcatgacagaatatgttgttacacgttggtaccgagc 187
|||||||| || ||||| ||||||||||||||| ||||
Sbjct: 753 ttcatgactgagtatgtggttacacgttggtacagagc 790
>PTA.sd.3160.C1 nseq=8
Length = 1614
Score = 42.1 bits (21), Expect = 0.002
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 150 ttcatgacagaatatgttgttacacgttggtaccgagctccagag 194
|||||||| ||||||||||| || | ||||||||||| ||||||
Sbjct: 742 ttcatgactgaatatgttgtgactagatggtaccgagcaccagag 786
Score = 34.2 bits (17), Expect = 0.55
Identities = 41/49 (83%)
Strand = Plus / Plus
Query: 85 tgaatgcaaactgtgacctcaagattggggattttgggcttgcgaggac 133
||||||||||||| ||| | ||||| | || |||||||| ||||||||
Sbjct: 674 tgaatgcaaactgcgacttaaagatatgtgactttgggctagcgaggac 722
>PTA.sd.7335.C1 nseq=6
Length = 1151
Score = 40.1 bits (20), Expect = 0.009
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 106 agattggggattttgggctt 125
||||||||||||||||||||
Sbjct: 722 agattggggattttgggctt 703
>PTA.sd.7085.C1 nseq=15
Length = 1599
Score = 40.1 bits (20), Expect = 0.009
Identities = 83/104 (79%)
Strand = Plus / Plus
Query: 150 ttcatgacagaatatgttgttacacgttggtaccgagctccagagttgctccttaattgc 209
|||||||| ||||||||||| || | |||||||| || |||||| | ||| | || |
Sbjct: 770 ttcatgactgaatatgttgtcacgagatggtaccgtgcaccagagcttctcttaaactct 829
Query: 210 tcagaatacactgcagctatcgacatttggtctgtcggttgtat 253
|| || || |||||||||||||| |||||||||| || |||||
Sbjct: 830 tctgattatactgcagctatcgatgtttggtctgtaggctgtat 873
Score = 34.2 bits (17), Expect = 0.55
Identities = 53/65 (81%)
Strand = Plus / Plus
Query: 60 gatttaaaaccgagtaacttgctcctgaatgcaaactgtgacctcaagattggggatttt 119
||||| ||||| ||||| | |||||||| |||||||| ||||| || || | ||||||
Sbjct: 680 gatttgaaaccaagtaatctcctcctgaacgcaaactgcgacctaaaaatctgcgatttt 739
Query: 120 gggct 124
|||||
Sbjct: 740 gggct 744
>PTA.sd.11721.C1 nseq=17
Length = 2066
Score = 38.2 bits (19), Expect = 0.035
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 171 acacgttggtaccgagctccaga 193
||||||||||| |||||||||||
Sbjct: 950 acacgttggtatcgagctccaga 972
>At4g36450.F
Length = 1086
Score = 38.2 bits (19), Expect = 0.035
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 153 atgacagaatatgttgttacacgttggtaccgagc 187
|||||||| ||||| || || ||||||||||||||
Sbjct: 559 atgacagagtatgtggtcactcgttggtaccgagc 593
Score = 36.2 bits (18), Expect = 0.14
Identities = 39/46 (84%)
Strand = Plus / Plus
Query: 85 tgaatgcaaactgtgacctcaagattggggattttgggcttgcgag 130
||||||| || ||||| || |||||| | ||||| |||||||||||
Sbjct: 497 tgaatgctaattgtgatctaaagatttgtgatttcgggcttgcgag 542
>PTA.sd.6383.C1 nseq=8
Length = 1795
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 257 cggtgaaataatgacgcg 274
||||||||||||||||||
Sbjct: 924 cggtgaaataatgacgcg 907
>PTA.sd.16169.C1 nseq=4
Length = 3608
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 220 ctgcagctatcgacatt 236
|||||||||||||||||
Sbjct: 2367 ctgcagctatcgacatt 2351
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 36 cattcagccaatgta 50
|||||||||||||||
Sbjct: 2354 cattcagccaatgta 2340
>PTA.sd.13373.C1 nseq=9
Length = 1726
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3 ctgtatcagttgttgcg 19
|||||||||||||||||
Sbjct: 878 ctgtatcagttgttgcg 862
>PTA.sd.11512.C1 nseq=4
Length = 2824
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 101 cctcaagattggggattttgg 121
|||||||||||| ||||||||
Sbjct: 1472 cctcaagattggagattttgg 1492
>At5g02070.F
Length = 1974
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 195 ttgctccttaattgctc 211
|||||||||||||||||
Sbjct: 409 ttgctccttaattgctc 425
>PTA.sd.4530.C1 nseq=3
Length = 1218
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 104 caagattggggatttt 119
||||||||||||||||
Sbjct: 362 caagattggggatttt 377
>PTA.sd.3113.C1 nseq=2
Length = 2064
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 102 ctcaagattggggattttgg 121
||||||||||| ||||||||
Sbjct: 832 ctcaagattggtgattttgg 851
>PTA.sd.2899.C1 nseq=17
Length = 1968
Score = 32.2 bits (16), Expect = 2.2
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 216 tacactgcagctatcgacatttgg 239
|||||| ||||||||||| |||||
Sbjct: 586 tacactccagctatcgacgtttgg 609
>PTA.sd.10740.C1 nseq=2
Length = 3931
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 108 attggggattttgggcttgc 127
|||||||||||||| |||||
Sbjct: 1891 attggggattttggtcttgc 1910
>PTA.sd.9899.C1 nseq=7
Length = 6116
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 107 gattggggattttgg 121
|||||||||||||||
Sbjct: 3049 gattggggattttgg 3063
>PTA.sd.7467.C1 nseq=12
Length = 1810
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 48 gtactgcatcgtgat 62
|||||||||||||||
Sbjct: 883 gtactgcatcgtgat 869
>PTA.sd.7286.C1 nseq=3
Length = 1345
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 108 attggggattttggg 122
|||||||||||||||
Sbjct: 1253 attggggattttggg 1267
>PTA.sd.7015.C1 nseq=27
Length = 2420
Score = 30.2 bits (15), Expect = 8.6
Identities = 30/35 (85%)
Strand = Plus / Plus
Query: 87 aatgcaaactgtgacctcaagattggggattttgg 121
|||||||||||| | || |||||| | ||||||||
Sbjct: 893 aatgcaaactgtaaacttaagatttgtgattttgg 927
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 1 tcctgtatcagttgttgcg 19
||||||||||||| |||||
Sbjct: 807 tcctgtatcagttattgcg 825
>PTA.sd.2965.C1 nseq=18
Length = 2045
Score = 30.2 bits (15), Expect = 8.6
Identities = 24/27 (88%)
Strand = Plus / Plus
Query: 168 gttacacgttggtaccgagctccagag 194
||||||| ||||| ||||||||||||
Sbjct: 994 gttacactatggtatcgagctccagag 1020
>PTA.sd.18018.C1 nseq=9
Length = 2539
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 152 catgacagaatatgttgtt 170
||||||||||| |||||||
Sbjct: 1494 catgacagaatctgttgtt 1512
>PTA.sd.17864.C1 nseq=23
Length = 1901
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 113 ggattttgggcttgc 127
|||||||||||||||
Sbjct: 651 ggattttgggcttgc 665
>PTA.sd.17747.C1 nseq=6
Length = 1833
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 177 tggtaccgagctccagagttgct 199
||||||||||| |||||| ||||
Sbjct: 797 tggtaccgagcaccagagctgct 819
>PTA.sd.17240.C1 nseq=12
Length = 1557
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 ctcctgaatgcaaac 95
|||||||||||||||
Sbjct: 1241 ctcctgaatgcaaac 1255
>PTA.sd.10212.C1 nseq=10
Length = 1743
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 3 ctgtatcagttgttg 17
|||||||||||||||
Sbjct: 1675 ctgtatcagttgttg 1689
>At5g14990.F
Length = 2001
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 aagattggggatttt 119
|||||||||||||||
Sbjct: 433 aagattggggatttt 447
>At5g06820.F
Length = 2208
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 145 cagacttcatgacag 159
|||||||||||||||
Sbjct: 1914 cagacttcatgacag 1928
>At4g34940.F
Length = 1995
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 50 actgcatcgtgattt 64
|||||||||||||||
Sbjct: 322 actgcatcgtgattt 308
>At2g02300.F
Length = 855
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 aagattggggatttt 119
|||||||||||||||
Sbjct: 706 aagattggggatttt 720
>At1g17640.F
Length = 1110
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 276 gagccgttatttccg 290
|||||||||||||||
Sbjct: 1043 gagccgttatttccg 1029
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 294
length of database: 39,126,732
effective HSP length: 16
effective length of query: 278
effective length of database: 38,700,540
effective search space: 10758750120
effective search space used: 10758750120
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)