BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_17159
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
orF136b.F 595 e-170
At2g07691.F 595 e-170
PTA.sd.7830.C1 nseq=3 34 0.56
PTA.sd.5654.C1 nseq=40 34 0.56
At4g04490.F 34 0.56
PTA.sd.817.C1 nseq=7 32 2.2
PTA.sd.8112.C1 nseq=3 32 2.2
PTA.sd.1722.C1 nseq=3 32 2.2
At4g36580.F 32 2.2
At3g01900.F 32 2.2
At1g37060.F 32 2.2
At4g30510.F PTA.sd.13079.singlet 30 8.7
At2g14110.F PTA.sd.5042.singlet 30 8.7
PTA.sd.9030.C1 nseq=3 30 8.7
PTA.sd.7370.C1 nseq=11 30 8.7
>orF136b.F
Length = 411
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 gtatactttctatcgtaactgggtggaatcctggttacagcacatccgttcatactacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 gtatactttctatcgtaactgggtggaatcctggttacagcacatccgttcatactacct 143
Query: 61 tcttttcattgatggagatccttctctttcaaagttctttgagattgagatatgtgccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tcttttcattgatggagatccttctctttcaaagttctttgagattgagatatgtgccca 203
Query: 121 ctcttggaagcgttcgactttcgaccaacaggtctttaagtttggccttctatgggagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctcttggaagcgttcgactttcgaccaacaggtctttaagtttggccttctatgggagtg 263
Query: 181 tgtggatattgctcgctctagaacagtttattggcaatgtgctttaggcacaggtcatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtggatattgctcgctctagaacagtttattggcaatgtgctttaggcacaggtcatat 323
Query: 241 acaggaagataaggtatcggaggcaacaagcccctttaccgatgacagttgtaccaacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acaggaagataaggtatcggaggcaacaagcccctttaccgatgacagttgtaccaacag 383
>At2g07691.F
Length = 411
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 gtatactttctatcgtaactgggtggaatcctggttacagcacatccgttcatactacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 gtatactttctatcgtaactgggtggaatcctggttacagcacatccgttcatactacct 143
Query: 61 tcttttcattgatggagatccttctctttcaaagttctttgagattgagatatgtgccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tcttttcattgatggagatccttctctttcaaagttctttgagattgagatatgtgccca 203
Query: 121 ctcttggaagcgttcgactttcgaccaacaggtctttaagtttggccttctatgggagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctcttggaagcgttcgactttcgaccaacaggtctttaagtttggccttctatgggagtg 263
Query: 181 tgtggatattgctcgctctagaacagtttattggcaatgtgctttaggcacaggtcatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtggatattgctcgctctagaacagtttattggcaatgtgctttaggcacaggtcatat 323
Query: 241 acaggaagataaggtatcggaggcaacaagcccctttaccgatgacagttgtaccaacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acaggaagataaggtatcggaggcaacaagcccctttaccgatgacagttgtaccaacag 383
>PTA.sd.7830.C1 nseq=3
Length = 6213
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 155 tttaagtttggccttct 171
|||||||||||||||||
Sbjct: 825 tttaagtttggccttct 841
>PTA.sd.5654.C1 nseq=40
Length = 1968
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 95 ttctttgagattgagat 111
|||||||||||||||||
Sbjct: 967 ttctttgagattgagat 951
>At4g04490.F
Length = 1977
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 79 tccttctctttcaaagttctt 99
||||||| |||||||||||||
Sbjct: 1644 tccttctgtttcaaagttctt 1624
>PTA.sd.817.C1 nseq=7
Length = 1052
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 58 ccttcttttcattgat 73
||||||||||||||||
Sbjct: 924 ccttcttttcattgat 909
>PTA.sd.8112.C1 nseq=3
Length = 2440
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 81 cttctctttcaaagtt 96
||||||||||||||||
Sbjct: 2394 cttctctttcaaagtt 2409
>PTA.sd.1722.C1 nseq=3
Length = 1387
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 168 ttctatgggagtgtgt 183
||||||||||||||||
Sbjct: 20 ttctatgggagtgtgt 5
>At4g36580.F
Length = 1863
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 59 cttcttttcattgatg 74
||||||||||||||||
Sbjct: 1294 cttcttttcattgatg 1309
>At3g01900.F
Length = 1491
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 75 gagatccttctctttc 90
||||||||||||||||
Sbjct: 1469 gagatccttctctttc 1484
>At1g37060.F
Length = 5205
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 159 agtttggccttctatg 174
||||||||||||||||
Sbjct: 1227 agtttggccttctatg 1212
>At4g30510.F PTA.sd.13079.singlet
Length = 858
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 153 tctttaagtttggcc 167
|||||||||||||||
Sbjct: 568 tctttaagtttggcc 582
>At2g14110.F PTA.sd.5042.singlet
Length = 456
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 80 ccttctctttcaaag 94
|||||||||||||||
Sbjct: 187 ccttctctttcaaag 173
>PTA.sd.9030.C1 nseq=3
Length = 5547
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 60 ttcttttcattgatggaga 78
||||||||||||| |||||
Sbjct: 4348 ttcttttcattgacggaga 4330
>PTA.sd.7370.C1 nseq=11
Length = 2477
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 76 agatccttctctttc 90
|||||||||||||||
Sbjct: 107 agatccttctctttc 121
>PTA.sd.6968.C1 nseq=7
Length = 6907
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 55 ctaccttcttttcat 69
|||||||||||||||
Sbjct: 490 ctaccttcttttcat 476
>PTA.sd.6948.C1 nseq=8
Length = 1097
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 257 tcggaggcaacaagc 271
|||||||||||||||
Sbjct: 158 tcggaggcaacaagc 172
>PTA.sd.6622.C1 nseq=4
Length = 1764
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 121 ctcttggaagcgttc 135
|||||||||||||||
Sbjct: 1442 ctcttggaagcgttc 1456
>PTA.sd.4218.C1 nseq=2
Length = 1662
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 78 atccttctctttcaa 92
|||||||||||||||
Sbjct: 848 atccttctctttcaa 834
>PTA.sd.3776.C1 nseq=7
Length = 3508
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 76 agatccttctctttc 90
|||||||||||||||
Sbjct: 1433 agatccttctctttc 1419
>PTA.sd.17776.C1 nseq=12
Length = 1307
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 205 agtttattggcaatg 219
|||||||||||||||
Sbjct: 859 agtttattggcaatg 845
>PTA.sd.17059.C1 nseq=10
Length = 2806
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 164 ggccttctatgggag 178
|||||||||||||||
Sbjct: 2309 ggccttctatgggag 2323
>PTA.sd.15008.C1 nseq=11
Length = 2111
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 85 tctttcaaagttctt 99
|||||||||||||||
Sbjct: 312 tctttcaaagttctt 298
>PTA.sd.14741.C1 nseq=11
Length = 1084
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 244 ggaagataaggtatc 258
|||||||||||||||
Sbjct: 823 ggaagataaggtatc 809
>PTA.sd.14633.C1 nseq=17
Length = 1138
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 99 ttgagattgagatat 113
|||||||||||||||
Sbjct: 1086 ttgagattgagatat 1100
>PTA.sd.14478.C1 nseq=3
Length = 1044
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 205 agtttattggcaatg 219
|||||||||||||||
Sbjct: 713 agtttattggcaatg 699
>orF111c.F
Length = 336
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 282 atgacagttgtaccaacag 300
|||||| ||||||||||||
Sbjct: 1 atgacatttgtaccaacag 19
>At5g16700.F
Length = 1467
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 88 ttcaaagttctttga 102
|||||||||||||||
Sbjct: 1453 ttcaaagttctttga 1467
>At4g23030.F
Length = 1509
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 206 gtttattggcaatgt 220
|||||||||||||||
Sbjct: 1043 gtttattggcaatgt 1057
>At3g14570.F
Length = 5922
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 59 cttcttttcattgat 73
|||||||||||||||
Sbjct: 1758 cttcttttcattgat 1744
>At1g71140.F
Length = 1458
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 151 ggtctttaagtttgg 165
|||||||||||||||
Sbjct: 591 ggtctttaagtttgg 605
>At1g61480.F
Length = 2457
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 aaagttctttgagat 105
|||||||||||||||
Sbjct: 1437 aaagttctttgagat 1451
>At1g29620.F
Length = 441
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 78 atccttctctttcaa 92
|||||||||||||||
Sbjct: 241 atccttctctttcaa 227
>At1g12290.F
Length = 2655
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 65 ttcattgatggagat 79
|||||||||||||||
Sbjct: 1309 ttcattgatggagat 1323
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)