BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_17089
(293 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01460.F 581 e-165
At4g01190.F 98 4e-20
PTA.sd.8025.C1 nseq=3 50 9e-06
PTA.sd.8734.C1 nseq=6 36 0.14
PTA.sd.8662.C1 nseq=43 36 0.14
PTA.sd.8651.C1 nseq=7 36 0.14
PTA.sd.8638.C1 nseq=13 36 0.14
At3g62620.F 36 0.14
PTA.sd.9292.C1 nseq=6 34 0.55
PTA.sd.7408.C1 nseq=9 34 0.55
PTA.sd.532.C1 nseq=2 34 0.55
PTA.sd.517.C1 nseq=27 34 0.55
PTA.sd.2254.C1 nseq=6 34 0.55
PTA.sd.1081.C1 nseq=13 34 0.55
PTA.sd.10610.C1 nseq=22 34 0.55
>At1g01460.F
Length = 1278
Score = 581 bits (293), Expect = e-165
Identities = 293/293 (100%)
Strand = Plus / Plus
Query: 1 actaacttcggtatgaagataccaggacgagcacgacgggttgggagaggagaatcaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 actaacttcggtatgaagataccaggacgagcacgacgggttgggagaggagaatcaggg 1041
Query: 61 agtgtggtgggaaaacagagcagagaaggaggagaagaatggtacgatgtgattttgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 agtgtggtgggaaaacagagcagagaaggaggagaagaatggtacgatgtgattttgtat 1101
Query: 121 cttgggattatagacattttccaagactacggtgtgagaaaacgccttgaacattgttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 cttgggattatagacattttccaagactacggtgtgagaaaacgccttgaacattgttac 1161
Query: 181 aagtcaattcaacacagctctaagacaatctcagccgtccatcccaagatgtattcttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1162 aagtcaattcaacacagctctaagacaatctcagccgtccatcccaagatgtattcttct 1221
Query: 241 cgtttccaagactttgtctctcagatcttcttaccagacgaagatccttctca 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1222 cgtttccaagactttgtctctcagatcttcttaccagacgaagatccttctca 1274
>At4g01190.F
Length = 1206
Score = 97.6 bits (49), Expect = 4e-20
Identities = 142/173 (82%)
Strand = Plus / Plus
Query: 88 ggaggagaagaatggtacgatgtgattttgtatcttgggattatagacattttccaagac 147
|||| ||||||||||||| |||| |||||||| | ||||| |||||| || ||||||
Sbjct: 988 ggagaagaagaatggtacaatgttgttttgtatatagggatagtagacacatttcaagac 1047
Query: 148 tacggtgtgagaaaacgccttgaacattgttacaagtcaattcaacacagctctaagaca 207
|| ||| ||| |||||| | |||||||||||||| || |||||| | | ||| || ||
Sbjct: 1048 tatggtatgaagaaacgcatagaacattgttacaaatccattcaatataactcaaactca 1107
Query: 208 atctcagccgtccatcccaagatgtattcttctcgtttccaagactttgtctc 260
|||||| |||||||||| ||||| || |||||| | |||||||||||||||||
Sbjct: 1108 atctcaaccgtccatcctaagatctactcttctagattccaagactttgtctc 1160
>PTA.sd.8025.C1 nseq=3
Length = 2798
Score = 50.1 bits (25), Expect = 9e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 103 tacgatgtgattttgtatcttgggattatagacattttccaagactacg 151
||||||||||| ||||| | || |||||||||||| ||||||||||||
Sbjct: 2354 tacgatgtgatagtgtatttcggtattatagacattctccaagactacg 2402
>PTA.sd.8734.C1 nseq=6
Length = 3027
Score = 36.2 bits (18), Expect = 0.14
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 69 gggaaaacagagcagagaagga 90
||||| ||||||||||||||||
Sbjct: 2797 gggaagacagagcagagaagga 2818
>PTA.sd.8662.C1 nseq=43
Length = 1558
Score = 36.2 bits (18), Expect = 0.14
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 88 ggaggagaagaatggtacgatg 109
||||||||||||||| ||||||
Sbjct: 85 ggaggagaagaatgggacgatg 106
>PTA.sd.8651.C1 nseq=7
Length = 4404
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 70 ggaaaacagagcagagaa 87
||||||||||||||||||
Sbjct: 2358 ggaaaacagagcagagaa 2375
>PTA.sd.8638.C1 nseq=13
Length = 2121
Score = 36.2 bits (18), Expect = 0.14
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 77 agagcagagaaggaggagaaga 98
|||| |||||||||||||||||
Sbjct: 103 agagaagagaaggaggagaaga 82
>At3g62620.F
Length = 1290
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 205 acaatctcagccgtccat 222
||||||||||||||||||
Sbjct: 1118 acaatctcagccgtccat 1101
>PTA.sd.9292.C1 nseq=6
Length = 874
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 77 agagcagagaaggagga 93
|||||||||||||||||
Sbjct: 110 agagcagagaaggagga 126
>PTA.sd.7408.C1 nseq=9
Length = 1496
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 234 ttcttctcgtttccaagactt 254
||||||| |||||||||||||
Sbjct: 1384 ttcttcttgtttccaagactt 1404
>PTA.sd.532.C1 nseq=2
Length = 3129
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 77 agagcagagaaggaggagaag 97
|||||||||||||| ||||||
Sbjct: 889 agagcagagaaggaagagaag 909
>PTA.sd.517.C1 nseq=27
Length = 1416
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 81 cagagaaggaggagaag 97
|||||||||||||||||
Sbjct: 306 cagagaaggaggagaag 322
>PTA.sd.2254.C1 nseq=6
Length = 1620
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 83 gagaaggaggagaagaa 99
|||||||||||||||||
Sbjct: 134 gagaaggaggagaagaa 118
>PTA.sd.1081.C1 nseq=13
Length = 879
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 204 gacaatctcagccgtcc 220
|||||||||||||||||
Sbjct: 109 gacaatctcagccgtcc 125
>PTA.sd.10610.C1 nseq=22
Length = 1491
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 256 gtctctcagatcttctt 272
|||||||||||||||||
Sbjct: 53 gtctctcagatcttctt 37
>At5g19060.F
Length = 1656
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 81 cagagaaggaggagaag 97
|||||||||||||||||
Sbjct: 192 cagagaaggaggagaag 176
>At5g14460.F
Length = 1623
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 83 gagaaggaggagaagaa 99
|||||||||||||||||
Sbjct: 775 gagaaggaggagaagaa 791
>At3g49150.F
Length = 1773
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 251 actttgtctctcagatc 267
|||||||||||||||||
Sbjct: 1363 actttgtctctcagatc 1379
>At3g18650.F
Length = 1161
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 83 gagaaggaggagaagaa 99
|||||||||||||||||
Sbjct: 340 gagaaggaggagaagaa 356
>At2g39320.F
Length = 570
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 83 gagaaggaggagaagaa 99
|||||||||||||||||
Sbjct: 433 gagaaggaggagaagaa 449
>At1g58400.F
Length = 2703
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 84 agaaggaggagaagaat 100
|||||||||||||||||
Sbjct: 2634 agaaggaggagaagaat 2650
>At1g59124.F PTA.sd.3155.singlet
Length = 3468
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 85 gaaggaggagaagaat 100
||||||||||||||||
Sbjct: 2851 gaaggaggagaagaat 2866
>PTA.sd.4345.C1 nseq=4
Length = 1603
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 83 gagaaggaggagaaga 98
||||||||||||||||
Sbjct: 240 gagaaggaggagaaga 225
>PTA.sd.4221.C1 nseq=2
Length = 2688
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 80 gcagagaaggaggagaagaa 99
||||||||||| ||||||||
Sbjct: 1702 gcagagaaggatgagaagaa 1683
>PTA.sd.4090.C1 nseq=6
Length = 1525
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 108 tgtgattttgtatctt 123
||||||||||||||||
Sbjct: 1370 tgtgattttgtatctt 1385
>PTA.sd.1971.C1 nseq=2
Length = 3895
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 84 agaaggaggagaagaa 99
||||||||||||||||
Sbjct: 56 agaaggaggagaagaa 71
>PTA.sd.18074.C1 nseq=2
Length = 1864
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 278 acgaagatccttctca 293
||||||||||||||||
Sbjct: 489 acgaagatccttctca 474
>PTA.sd.18028.C2 nseq=10
Length = 2297
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 83 gagaaggaggagaaga 98
||||||||||||||||
Sbjct: 276 gagaaggaggagaaga 291
>PTA.sd.1792.C1 nseq=2
Length = 1672
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 227 agatgtattcttctcgtttc 246
||||| ||||||||||||||
Sbjct: 434 agatgcattcttctcgtttc 453
>PTA.sd.17728.C1 nseq=12
Length = 2508
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 88 ggaggagaagaatggt 103
||||||||||||||||
Sbjct: 2116 ggaggagaagaatggt 2131
>PTA.sd.16189.C1 nseq=4
Length = 2391
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 82 agagaaggaggagaag 97
||||||||||||||||
Sbjct: 309 agagaaggaggagaag 324
>PTA.sd.15120.C1 nseq=4
Length = 1929
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 81 cagagaaggaggagaa 96
||||||||||||||||
Sbjct: 94 cagagaaggaggagaa 79
>PTA.sd.15026.C1 nseq=14
Length = 2777
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 85 gaaggaggagaagaat 100
||||||||||||||||
Sbjct: 1405 gaaggaggagaagaat 1420
>PTA.sd.14963.C1 nseq=6
Length = 1492
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 83 gagaaggaggagaaga 98
||||||||||||||||
Sbjct: 360 gagaaggaggagaaga 375
>PTA.sd.13707.C1 nseq=6
Length = 5159
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 247 caagactttgtctctc 262
||||||||||||||||
Sbjct: 909 caagactttgtctctc 924
>PTA.sd.13605.C1 nseq=6
Length = 1345
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 208 atctcagccgtccatc 223
||||||||||||||||
Sbjct: 829 atctcagccgtccatc 814
>PTA.sd.1282.C1 nseq=12
Length = 2498
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 38 gggttgggagaggaga 53
||||||||||||||||
Sbjct: 351 gggttgggagaggaga 336
>PTA.sd.12044.C1 nseq=7
Length = 1209
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 215 ccgtccatcccaagat 230
||||||||||||||||
Sbjct: 151 ccgtccatcccaagat 166
>PTA.sd.10793.C1 nseq=3
Length = 4500
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 73 aaacagagcagagaag 88
||||||||||||||||
Sbjct: 271 aaacagagcagagaag 256
>PTA.sd.10390.C1 nseq=23
Length = 1332
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 87 aggaggagaagaatgg 102
||||||||||||||||
Sbjct: 301 aggaggagaagaatgg 286
>PTA.sd.10045.C1 nseq=2
Length = 1371
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 208 atctcagccgtccatc 223
||||||||||||||||
Sbjct: 979 atctcagccgtccatc 964
>At5g67080.F
Length = 1035
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 208 atctcagccgtccatc 223
||||||||||||||||
Sbjct: 785 atctcagccgtccatc 770
>At5g53220.F
Length = 1326
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 73 aaacagagcagagaag 88
||||||||||||||||
Sbjct: 368 aaacagagcagagaag 383
>At5g52600.F
Length = 606
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 83 gagaaggaggagaaga 98
||||||||||||||||
Sbjct: 443 gagaaggaggagaaga 458
>At5g51310.F
Length = 1002
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 203 agacaatctcagccgtccat 222
|||| |||||||||||||||
Sbjct: 750 agacgatctcagccgtccat 731
>At5g42640.F
Length = 903
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 84 agaaggaggagaagaa 99
||||||||||||||||
Sbjct: 162 agaaggaggagaagaa 147
>At3g46750.F
Length = 1248
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 84 agaaggaggagaagaa 99
||||||||||||||||
Sbjct: 369 agaaggaggagaagaa 384
>At3g24620.F
Length = 1572
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 254 ttgtctctcagatctt 269
||||||||||||||||
Sbjct: 246 ttgtctctcagatctt 231
>At2g37740.F
Length = 915
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 84 agaaggaggagaagaa 99
||||||||||||||||
Sbjct: 456 agaaggaggagaagaa 441
>At1g22600.F
Length = 1158
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 58 gggagtgtggtgggaa 73
||||||||||||||||
Sbjct: 577 gggagtgtggtgggaa 592
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 293
length of database: 39,126,732
effective HSP length: 16
effective length of query: 277
effective length of database: 38,700,540
effective search space: 10720049580
effective search space used: 10720049580
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)