BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_17063
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01740.F 595 e-170
PTA.sd.11118.C1 nseq=9 145 2e-34
PTA.sd.10341.C1 nseq=11 36 0.14
PTA.sd.7100.C1 nseq=8 34 0.56
PTA.sd.3399.C1 nseq=4 34 0.56
PTA.sd.17409.C1 nseq=10 34 0.56
PTA.sd.16215.C1 nseq=4 34 0.56
PTA.sd.15974.C1 nseq=84 34 0.56
PTA.sd.11053.C1 nseq=6 34 0.56
At2g05645.F 34 0.56
PTA.sd.3564.C1 nseq=10 32 2.2
PTA.sd.13951.C1 nseq=11 32 2.2
PTA.sd.1264.C1 nseq=4 32 2.2
PTA.sd.12072.C1 nseq=6 32 2.2
At4g36770.F 32 2.2
>At1g01740.F
Length = 1452
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 actctaaccgattcctgcttggagggacaattttcagacagtgatggtacggagttagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 actctaaccgattcctgcttggagggacaattttcagacagtgatggtacggagttagta 849
Query: 61 cgcctgacatcttgttgtcttcagtatgaagctcgtgagcgaccaaacataaaatctttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 cgcctgacatcttgttgtcttcagtatgaagctcgtgagcgaccaaacataaaatctttg 909
Query: 121 gtcactgcactgatatctctccagaaagacacagaggttctgtctcatgttctaatgggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 gtcactgcactgatatctctccagaaagacacagaggttctgtctcatgttctaatgggt 969
Query: 181 ctgcctcaaagtggtacttttgcgtcacctccgtctccttttgctgaggcttgctcggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 ctgcctcaaagtggtacttttgcgtcacctccgtctccttttgctgaggcttgctcggga 1029
Query: 241 aaagacctgacgtctatggttgagatcttggaaaaaattggttacaaagacgatgaagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 aaagacctgacgtctatggttgagatcttggaaaaaattggttacaaagacgatgaagat 1089
>PTA.sd.11118.C1 nseq=9
Length = 2439
Score = 145 bits (73), Expect = 2e-34
Identities = 216/263 (82%), Gaps = 3/263 (1%)
Strand = Plus / Plus
Query: 31 ttttcagacagtgatggtacggagttagtacgcctgacatcttgttgtcttcagtatgaa 90
||||| || ||||||||||| ||| |||||||||| | ||| |||||||||||||||||
Sbjct: 1498 ttttctgatagtgatggtacagagctagtacgcctagcttctcgttgtcttcagtatgaa 1557
Query: 91 gctcgtgagcgaccaaacataaaatctttggtcactgcactgatatctctccagaaagac 150
||||||||||| ||||||| |||||||| || ||||| ||| | |||| ||||| ||
Sbjct: 1558 gctcgtgagcggccaaacaccaaatctttagtgactgccttgacacctcttcagaaggag 1617
Query: 151 acagaggttctgtctcatgttctaatgggtctgcctcaaagtggtacttttgcgtcacct 210
|||||||| ||||||||||||||||||||||| ||||| |||||| | | || |||
Sbjct: 1618 acagaggtcctgtctcatgttctaatgggtctacctcacagtggttcagtc---tctcct 1674
Query: 211 ccgtctccttttgctgaggcttgctcgggaaaagacctgacgtctatggttgagatcttg 270
| ||| ||| ||| ||||||||| || ||| |||||||| ||||| |||||||| ||
Sbjct: 1675 ctgtcccctcttggtgaggcttgttcaagaagggacctgaccgctatgcttgagatcctg 1734
Query: 271 gaaaaaattggttacaaagacga 293
|| ||| |||| |||||||||||
Sbjct: 1735 gagaaacttggatacaaagacga 1757
>PTA.sd.10341.C1 nseq=11
Length = 1886
Score = 36.2 bits (18), Expect = 0.14
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 74 gttgtcttcagtatgaagctcg 95
||||||| ||||||||||||||
Sbjct: 1073 gttgtctgcagtatgaagctcg 1094
>PTA.sd.7100.C1 nseq=8
Length = 1768
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 113 aatctttggtcactgca 129
|||||||||||||||||
Sbjct: 1490 aatctttggtcactgca 1474
>PTA.sd.3399.C1 nseq=4
Length = 1406
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 16 tgcttggagggacaattttca 36
||||||||||| |||||||||
Sbjct: 619 tgcttggagggtcaattttca 639
>PTA.sd.17409.C1 nseq=10
Length = 1848
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 82 cagtatgaagctcgtga 98
|||||||||||||||||
Sbjct: 1036 cagtatgaagctcgtga 1052
>PTA.sd.16215.C1 nseq=4
Length = 1555
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 70 tcttgttgtcttcagta 86
|||||||||||||||||
Sbjct: 1295 tcttgttgtcttcagta 1311
>PTA.sd.15974.C1 nseq=84
Length = 2127
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 113 aatctttggtcactgca 129
|||||||||||||||||
Sbjct: 830 aatctttggtcactgca 846
>PTA.sd.11053.C1 nseq=6
Length = 1684
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 252 gtctatggttgagatct 268
|||||||||||||||||
Sbjct: 507 gtctatggttgagatct 523
>At2g05645.F
Length = 615
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 262 gagatcttggaaaaaat 278
|||||||||||||||||
Sbjct: 183 gagatcttggaaaaaat 167
>PTA.sd.3564.C1 nseq=10
Length = 2797
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 260 ttgagatcttggaaaa 275
||||||||||||||||
Sbjct: 584 ttgagatcttggaaaa 599
>PTA.sd.13951.C1 nseq=11
Length = 568
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 151 acagaggttctgtctc 166
||||||||||||||||
Sbjct: 140 acagaggttctgtctc 125
>PTA.sd.1264.C1 nseq=4
Length = 1826
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 216 tccttttgctgaggct 231
||||||||||||||||
Sbjct: 786 tccttttgctgaggct 771
>PTA.sd.12072.C1 nseq=6
Length = 1891
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 103 ccaaacataaaatctttggt 122
||||| ||||||||||||||
Sbjct: 956 ccaaagataaaatctttggt 975
>At4g36770.F
Length = 1374
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 153 agaggttctgtctcat 168
||||||||||||||||
Sbjct: 965 agaggttctgtctcat 950
>At4g24165.F
Length = 3015
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 283 tacaaagacgatgaag 298
||||||||||||||||
Sbjct: 2442 tacaaagacgatgaag 2457
>At1g56420.F
Length = 552
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 205 tcacctccgtctcctt 220
||||||||||||||||
Sbjct: 412 tcacctccgtctcctt 397
>At5g60930.F PTA.sd.17544.singlet
Length = 1926
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 taaccgattcctgct 19
|||||||||||||||
Sbjct: 1093 taaccgattcctgct 1079
>At1g55120.F PTA.sd.2991.singlet
Length = 1785
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 116 ctttggtcactgcac 130
|||||||||||||||
Sbjct: 1451 ctttggtcactgcac 1437
>PTA.sd.9870.C1 nseq=2
Length = 4587
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 174 aatgggtctgcctcaaagt 192
||||| |||||||||||||
Sbjct: 1122 aatggttctgcctcaaagt 1140
>PTA.sd.8606.C1 nseq=59
Length = 2793
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 258 ggttgagatcttgga 272
|||||||||||||||
Sbjct: 464 ggttgagatcttgga 478
>PTA.sd.8444.C1 nseq=22
Length = 1977
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 116 ctttggtcactgcac 130
|||||||||||||||
Sbjct: 1519 ctttggtcactgcac 1505
>PTA.sd.8233.C1 nseq=16
Length = 1239
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 103 ccaaacataaaatct 117
|||||||||||||||
Sbjct: 1191 ccaaacataaaatct 1177
>PTA.sd.5474.C1 nseq=7
Length = 1699
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 25 ggacaattttcagac 39
|||||||||||||||
Sbjct: 430 ggacaattttcagac 444
>PTA.sd.4902.C1 nseq=35
Length = 2623
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 185 ctcaaagtggtactt 199
|||||||||||||||
Sbjct: 593 ctcaaagtggtactt 607
>PTA.sd.355.C1 nseq=9
Length = 497
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 285 caaagacgatgaaga 299
|||||||||||||||
Sbjct: 196 caaagacgatgaaga 210
>PTA.sd.324.C1 nseq=2
Length = 2534
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 141 ccagaaagacacaga 155
|||||||||||||||
Sbjct: 1313 ccagaaagacacaga 1327
>PTA.sd.2024.C1 nseq=7
Length = 1980
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 268 ttggaaaaaattggt 282
|||||||||||||||
Sbjct: 920 ttggaaaaaattggt 934
>PTA.sd.17097.C1 nseq=2
Length = 781
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 168 tgttctaatgggtct 182
|||||||||||||||
Sbjct: 147 tgttctaatgggtct 133
>PTA.sd.1650.C1 nseq=4
Length = 1215
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 106 aacataaaatctttg 120
|||||||||||||||
Sbjct: 175 aacataaaatctttg 161
>PTA.sd.16453.C1 nseq=9
Length = 941
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 285 caaagacgatgaaga 299
|||||||||||||||
Sbjct: 131 caaagacgatgaaga 145
>PTA.sd.16344.C1 nseq=6
Length = 2463
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 27 acaattttcagacag 41
|||||||||||||||
Sbjct: 2174 acaattttcagacag 2188
>PTA.sd.15481.C1 nseq=10
Length = 2621
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 13 tcctgcttggaggga 27
|||||||||||||||
Sbjct: 692 tcctgcttggaggga 678
>PTA.sd.15290.C1 nseq=3
Length = 1482
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 27 acaattttcagacagtgat 45
|||| ||||||||||||||
Sbjct: 1267 acaagtttcagacagtgat 1285
>PTA.sd.14591.C1 nseq=2
Length = 3015
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1 actctaaccgattcc 15
|||||||||||||||
Sbjct: 1279 actctaaccgattcc 1293
>PTA.sd.12056.C1 nseq=13
Length = 2023
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 259 gttgagatcttggaa 273
|||||||||||||||
Sbjct: 953 gttgagatcttggaa 967
>PTA.sd.11624.C1 nseq=4
Length = 1961
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 169 gttctaatgggtctg 183
|||||||||||||||
Sbjct: 177 gttctaatgggtctg 191
>PTA.sd.11115.C1 nseq=15
Length = 2329
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 266 tcttggaaaaaattg 280
|||||||||||||||
Sbjct: 947 tcttggaaaaaattg 961
>PTA.sd.10436.C1 nseq=2
Length = 6450
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 135 atctctccagaaaga 149
|||||||||||||||
Sbjct: 6197 atctctccagaaaga 6183
>At4g22170.F
Length = 1287
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 135 atctctccagaaaga 149
|||||||||||||||
Sbjct: 677 atctctccagaaaga 663
>At4g03800.F
Length = 1914
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 acctccgtctccttt 221
|||||||||||||||
Sbjct: 693 acctccgtctccttt 707
>At3g55860.F
Length = 543
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 214 tctccttttgctgag 228
|||||||||||||||
Sbjct: 313 tctccttttgctgag 327
>At3g44930.F
Length = 2196
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 72 ttgttgtcttcagta 86
|||||||||||||||
Sbjct: 1946 ttgttgtcttcagta 1932
>At3g13784.F
Length = 1710
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 116 ctttggtcactgcac 130
|||||||||||||||
Sbjct: 1445 ctttggtcactgcac 1431
>At1g43880.F
Length = 1230
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 gctcgtgagcgacca 105
|||||||||||||||
Sbjct: 300 gctcgtgagcgacca 314
>At1g31840.F
Length = 2538
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 285 caaagacgatgaaga 299
|||||||||||||||
Sbjct: 27 caaagacgatgaaga 13
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)