BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_16850
(296 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g21460.F 587 e-167
PTA.sd.6081.C1 nseq=5 38 0.035
At1g03020.F 38 0.035
PTA.sd.10108.C1 nseq=11 36 0.14
At3g62930.F PTA.sd.11007.singlet 34 0.55
At3g02000.F 34 0.55
At1g24460.F PTA.sd.1787.singlet 32 2.2
PTA.sd.6064.C1 nseq=2 32 2.2
PTA.sd.3615.C1 nseq=4 32 2.2
PTA.sd.16649.C1 nseq=6 32 2.2
PTA.sd.12924.C1 nseq=7 32 2.2
PTA.sd.11933.C1 nseq=2 32 2.2
At3g50420.F 32 2.2
At2g47870.F 32 2.2
At5g40040.F PTA.sd.16064.singlet 30 8.6
>At3g21460.F
Length = 309
Score = 587 bits (296), Expect = e-167
Identities = 296/296 (100%)
Strand = Plus / Plus
Query: 1 gtagcaagattagcgtcgcaaagagcggtggtgatattcagcaagagtacgtgttgcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gtagcaagattagcgtcgcaaagagcggtggtgatattcagcaagagtacgtgttgcatg 69
Query: 61 tctcatgcaattaaacggttgttttacgagcaaggtgtgagcccggcaattgtagagatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 tctcatgcaattaaacggttgttttacgagcaaggtgtgagcccggcaattgtagagatc 129
Query: 121 gaccaagacatgtatgggaaagatatcgagtgggccttggcccgattaggctgtagccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gaccaagacatgtatgggaaagatatcgagtgggccttggcccgattaggctgtagccct 189
Query: 181 acggttcctgcggtttttgttggagggaaattcgtaggaacggccaatactgtcatgact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 acggttcctgcggtttttgttggagggaaattcgtaggaacggccaatactgtcatgact 249
Query: 241 cttcatctcaatggatcattgaaaatattgctcaaggaggctggtgctttgtggct 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cttcatctcaatggatcattgaaaatattgctcaaggaggctggtgctttgtggct 305
>PTA.sd.6081.C1 nseq=5
Length = 685
Score = 38.2 bits (19), Expect = 0.035
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 28 gtggtgatattcagcaagagtacgtgttgcatgtc 62
||||| || ||||||||||| |||||||||||||
Sbjct: 254 gtggttattttcagcaagagctcgtgttgcatgtc 288
>At1g03020.F
Length = 309
Score = 38.2 bits (19), Expect = 0.035
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 28 gtggtgatattcagcaaga 46
|||||||||||||||||||
Sbjct: 37 gtggtgatattcagcaaga 55
>PTA.sd.10108.C1 nseq=11
Length = 3870
Score = 36.2 bits (18), Expect = 0.14
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 258 attgaaaatattgctcaaggag 279
||||| ||||||||||||||||
Sbjct: 484 attgagaatattgctcaaggag 505
>At3g62930.F PTA.sd.11007.singlet
Length = 309
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 28 gtggtgatattcagcaa 44
|||||||||||||||||
Sbjct: 37 gtggtgatattcagcaa 53
>At3g02000.F
Length = 411
Score = 34.2 bits (17), Expect = 0.55
Identities = 32/37 (86%)
Strand = Plus / Plus
Query: 25 gcggtggtgatattcagcaagagtacgtgttgcatgt 61
||||||||||| |||||| ||| ||||| |||||||
Sbjct: 118 gcggtggtgatcttcagcgtgagcacgtgctgcatgt 154
>At1g24460.F PTA.sd.1787.singlet
Length = 5376
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 atcattgaaaatattg 270
||||||||||||||||
Sbjct: 1399 atcattgaaaatattg 1414
>PTA.sd.6064.C1 nseq=2
Length = 1504
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 182 cggttcctgcggtttt 197
||||||||||||||||
Sbjct: 639 cggttcctgcggtttt 654
>PTA.sd.3615.C1 nseq=4
Length = 1563
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 235 atgactcttcatctca 250
||||||||||||||||
Sbjct: 1350 atgactcttcatctca 1335
>PTA.sd.16649.C1 nseq=6
Length = 1528
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 19 caaagagcggtggtga 34
||||||||||||||||
Sbjct: 201 caaagagcggtggtga 186
>PTA.sd.12924.C1 nseq=7
Length = 1449
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 124 caagacatgtatggga 139
||||||||||||||||
Sbjct: 1129 caagacatgtatggga 1144
>PTA.sd.11933.C1 nseq=2
Length = 598
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 55 tgcatgtctcatgcaattaa 74
|||||||||||| |||||||
Sbjct: 184 tgcatgtctcatacaattaa 203
>At3g50420.F
Length = 2385
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 126 agacatgtatgggaaa 141
||||||||||||||||
Sbjct: 1635 agacatgtatgggaaa 1650
>At2g47870.F
Length = 312
Score = 32.2 bits (16), Expect = 2.2
Identities = 31/36 (86%)
Strand = Plus / Plus
Query: 31 gtgatattcagcaagagtacgtgttgcatgtctcat 66
|||||||||| ||||| |||||||||||| ||||
Sbjct: 40 gtgatattcacgaagagctcgtgttgcatgtgtcat 75
>At5g40040.F PTA.sd.16064.singlet
Length = 345
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 114 agagatcgaccaaga 128
|||||||||||||||
Sbjct: 96 agagatcgaccaaga 110
>PTA.sd.9384.C1 nseq=10
Length = 1377
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 246 tctcaatggatcatt 260
|||||||||||||||
Sbjct: 1123 tctcaatggatcatt 1137
>PTA.sd.7893.C1 nseq=11
Length = 2285
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 251 atggatcattgaaaa 265
|||||||||||||||
Sbjct: 860 atggatcattgaaaa 874
>PTA.sd.2367.C1 nseq=8
Length = 1021
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 3 agcaagattagcgtc 17
|||||||||||||||
Sbjct: 707 agcaagattagcgtc 721
>PTA.sd.2041.C1 nseq=6
Length = 792
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 262 aaaatattgctcaag 276
|||||||||||||||
Sbjct: 347 aaaatattgctcaag 361
>PTA.sd.17268.C1 nseq=6
Length = 1126
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 260 tgaaaatattgctca 274
|||||||||||||||
Sbjct: 553 tgaaaatattgctca 567
>PTA.sd.15386.C1 nseq=8
Length = 1048
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 242 ttcatctcaatggat 256
|||||||||||||||
Sbjct: 249 ttcatctcaatggat 263
>PTA.sd.14777.C1 nseq=6
Length = 2450
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 233 tcatgactcttcatc 247
|||||||||||||||
Sbjct: 969 tcatgactcttcatc 983
>PTA.sd.14319.C1 nseq=8
Length = 3783
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 263 aaatattgctcaagg 277
|||||||||||||||
Sbjct: 2300 aaatattgctcaagg 2286
>PTA.sd.13898.C1 nseq=41
Length = 1308
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 275 aggaggctggtgctt 289
|||||||||||||||
Sbjct: 261 aggaggctggtgctt 275
>PTA.sd.13232.C1 nseq=62
Length = 3896
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 238 actcttcatctcaat 252
|||||||||||||||
Sbjct: 2968 actcttcatctcaat 2982
>PTA.sd.11935.C1 nseq=5
Length = 2099
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 gacatgtatgggaaa 141
|||||||||||||||
Sbjct: 630 gacatgtatgggaaa 644
>PTA.sd.10678.C1 nseq=3
Length = 2536
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 gacatgtatgggaaa 141
|||||||||||||||
Sbjct: 1946 gacatgtatgggaaa 1960
>PTA.sd.10530.C1 nseq=16
Length = 3409
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 ttgttggagggaaat 211
|||||||||||||||
Sbjct: 1593 ttgttggagggaaat 1607
>At5g44270.F
Length = 930
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 151 tgggccttggcccgattag 169
||||||||||||| |||||
Sbjct: 41 tgggccttggcccaattag 59
>At4g33850.F
Length = 1116
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 194 tttttgttggagggaaatt 212
||||||||||| |||||||
Sbjct: 696 tttttgttggatggaaatt 678
>At3g29190.F
Length = 1560
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 131 tgtatgggaaagata 145
|||||||||||||||
Sbjct: 1153 tgtatgggaaagata 1167
>At3g02330.F
Length = 2586
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 gacatgtatgggaaa 141
|||||||||||||||
Sbjct: 1147 gacatgtatgggaaa 1161
>At2g17660.F
Length = 210
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 30 ggtgatattcagcaa 44
|||||||||||||||
Sbjct: 84 ggtgatattcagcaa 98
>At2g16040.F
Length = 1149
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 240 tcttcatctcaatgg 254
|||||||||||||||
Sbjct: 586 tcttcatctcaatgg 572
>At1g75620.F
Length = 1644
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 247 ctcaatggatcattgaaaa 265
||||||||||| |||||||
Sbjct: 950 ctcaatggatcgttgaaaa 968
>At1g23450.F
Length = 1986
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 gacatgtatgggaaa 141
|||||||||||||||
Sbjct: 1075 gacatgtatgggaaa 1089
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 296
length of database: 39,126,732
effective HSP length: 16
effective length of query: 280
effective length of database: 38,700,540
effective search space: 10836151200
effective search space used: 10836151200
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)