BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_16802
(298 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.6796.C1 nseq=7 591 e-168
PTA.sd.9689.C1 nseq=6 38 0.036
At1g76720.F PTA.sd.4386.singlet 34 0.56
PTA.sd.992.C1 nseq=3 34 0.56
PTA.sd.4392.C1 nseq=6 34 0.56
PTA.sd.4391.C1 nseq=10 34 0.56
PTA.sd.4202.C1 nseq=4 34 0.56
PTA.sd.17886.C1 nseq=22 34 0.56
PTA.sd.15361.C1 nseq=21 34 0.56
PTA.sd.13599.C1 nseq=9 34 0.56
PTA.sd.12226.C1 nseq=14 34 0.56
At5g24310.F PTA.sd.15553.singlet 32 2.2
At1g09370.F PTA.sd.652.singlet 32 2.2
PTA.sd.9263.C1 nseq=8 32 2.2
PTA.sd.8995.C1 nseq=2 32 2.2
>PTA.sd.6796.C1 nseq=7
Length = 1373
Score = 591 bits (298), Expect = e-168
Identities = 298/298 (100%)
Strand = Plus / Plus
Query: 1 ggtttcaggagagtctggtggagcagtggtggcagtagctgttgaggaagaagctgcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 ggtttcaggagagtctggtggagcagtggtggcagtagctgttgaggaagaagctgcaga 1118
Query: 61 agagtctgatggggacatgggatttgatctgttcggttaaaatacaccgtcttatctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 agagtctgatggggacatgggatttgatctgttcggttaaaatacaccgtcttatctttt 1178
Query: 121 gccagcctttcctatttattttatggacctttaaaactttcacgttcagaatttctttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 gccagcctttcctatttattttatggacctttaaaactttcacgttcagaatttctttgt 1238
Query: 181 tacgtttatggatattttgtttcttcatcaaaactacctttctggttttaatttctctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 tacgtttatggatattttgtttcttcatcaaaactacctttctggttttaatttctctcc 1298
Query: 241 gttgaggaattttctgaacccaattatattggttaacaatgtcattgtctgattctgt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 gttgaggaattttctgaacccaattatattggttaacaatgtcattgtctgattctgt 1356
>PTA.sd.9689.C1 nseq=6
Length = 586
Score = 38.2 bits (19), Expect = 0.036
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 58 agaagagtctgatggggacatgggatt 84
|||||||||||||| |||||||||||
Sbjct: 363 agaagagtctgatgatgacatgggatt 389
>At1g76720.F PTA.sd.4386.singlet
Length = 3675
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 39 ctgttgaggaagaagct 55
|||||||||||||||||
Sbjct: 1336 ctgttgaggaagaagct 1352
>PTA.sd.992.C1 nseq=3
Length = 1534
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 117 ttttgccagcctttcct 133
|||||||||||||||||
Sbjct: 1026 ttttgccagcctttcct 1042
>PTA.sd.4392.C1 nseq=6
Length = 3583
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 39 ctgttgaggaagaagct 55
|||||||||||||||||
Sbjct: 1208 ctgttgaggaagaagct 1224
>PTA.sd.4391.C1 nseq=10
Length = 4382
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 39 ctgttgaggaagaagct 55
|||||||||||||||||
Sbjct: 1555 ctgttgaggaagaagct 1571
>PTA.sd.4202.C1 nseq=4
Length = 1116
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 171 atttctttgttacgttt 187
|||||||||||||||||
Sbjct: 905 atttctttgttacgttt 921
>PTA.sd.17886.C1 nseq=22
Length = 755
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 47 gaagaagctgcagaaga 63
|||||||||||||||||
Sbjct: 550 gaagaagctgcagaaga 566
>PTA.sd.15361.C1 nseq=21
Length = 1260
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 45 aggaagaagctgcagaa 61
|||||||||||||||||
Sbjct: 529 aggaagaagctgcagaa 545
>PTA.sd.13599.C1 nseq=9
Length = 2115
Score = 34.2 bits (17), Expect = 0.56
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 135 tttattttatggacctttaaaactt 159
|||||||| ||| ||||||||||||
Sbjct: 1972 tttattttttggtcctttaaaactt 1996
>PTA.sd.12226.C1 nseq=14
Length = 1917
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 35 gtagctgttgaggaaga 51
|||||||||||||||||
Sbjct: 1027 gtagctgttgaggaaga 1043
>At5g24310.F PTA.sd.15553.singlet
Length = 1002
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 201 ttcttcatcaaaactacctt 220
|||| |||||||||||||||
Sbjct: 498 ttctccatcaaaactacctt 479
>At1g09370.F PTA.sd.652.singlet
Length = 372
Score = 32.2 bits (16), Expect = 2.2
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 160 tcacgttcagaatttctttgttac 183
||||||||| |||||||||||||
Sbjct: 82 tcacgttcatgatttctttgttac 59
>PTA.sd.9263.C1 nseq=8
Length = 2392
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 44 gaggaagaagctgcagaaga 63
|||||||||||||| |||||
Sbjct: 458 gaggaagaagctgccgaaga 439
>PTA.sd.8995.C1 nseq=2
Length = 1590
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 43 tgaggaagaagctgcagaag 62
|||||||||||| |||||||
Sbjct: 813 tgaggaagaagcagcagaag 832
>PTA.sd.8418.C1 nseq=20
Length = 2104
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 277 caatgtcattgtctgattct 296
|||| |||||||||||||||
Sbjct: 424 caatctcattgtctgattct 405
>PTA.sd.3194.C1 nseq=22
Length = 1805
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 51 aagctgcagaagagtc 66
||||||||||||||||
Sbjct: 305 aagctgcagaagagtc 320
>PTA.sd.2408.C1 nseq=8
Length = 5833
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 44 gaggaagaagctgcag 59
||||||||||||||||
Sbjct: 811 gaggaagaagctgcag 826
>PTA.sd.2407.C1 nseq=7
Length = 6791
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 44 gaggaagaagctgcag 59
||||||||||||||||
Sbjct: 1957 gaggaagaagctgcag 1972
>PTA.sd.17945.C1 nseq=9
Length = 1977
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 199 gtttcttcatcaaaac 214
||||||||||||||||
Sbjct: 742 gtttcttcatcaaaac 727
>PTA.sd.16750.C1 nseq=4
Length = 1479
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 201 ttcttcatcaaaacta 216
||||||||||||||||
Sbjct: 77 ttcttcatcaaaacta 92
>PTA.sd.14252.C1 nseq=5
Length = 2172
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 48 aagaagctgcagaaga 63
||||||||||||||||
Sbjct: 923 aagaagctgcagaaga 938
>PTA.sd.14001.C1 nseq=11
Length = 1748
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 165 ttcagaatttctttgt 180
||||||||||||||||
Sbjct: 1384 ttcagaatttctttgt 1399
>PTA.sd.13668.C1 nseq=7
Length = 2056
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 47 gaagaagctgcagaag 62
||||||||||||||||
Sbjct: 1415 gaagaagctgcagaag 1430
>PTA.sd.12622.C1 nseq=8
Length = 1449
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 279 atgtcattgtctgatt 294
||||||||||||||||
Sbjct: 28 atgtcattgtctgatt 13
>PTA.sd.11703.C1 nseq=4
Length = 3426
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 34 agtagctgttgaggaa 49
||||||||||||||||
Sbjct: 180 agtagctgttgaggaa 195
>PTA.sd.1034.C1 nseq=12
Length = 902
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 42 ttgaggaagaagctgc 57
||||||||||||||||
Sbjct: 49 ttgaggaagaagctgc 34
>PTA.sd.10210.C1 nseq=17
Length = 1335
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 41 gttgaggaagaagctg 56
||||||||||||||||
Sbjct: 528 gttgaggaagaagctg 543
>At1g44608.F
Length = 318
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 58 agaagagtctgatggg 73
||||||||||||||||
Sbjct: 211 agaagagtctgatggg 196
>At4g32760.F PTA.sd.13263.singlet
Length = 2517
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 14 tctggtggagcagtg 28
|||||||||||||||
Sbjct: 820 tctggtggagcagtg 834
>At1g76980.F PTA.sd.4404.singlet
Length = 777
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 21 gagcagtggtggcagtagc 39
|||||||||||| ||||||
Sbjct: 642 gagcagtggtggtagtagc 660
>At1g69400.F PTA.sd.3805.singlet
Length = 339
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 15 ctggtggagcagtgg 29
|||||||||||||||
Sbjct: 101 ctggtggagcagtgg 115
>At1g07990.F PTA.sd.541.singlet
Length = 2649
Score = 30.2 bits (15), Expect = 8.7
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 42 ttgaggaagaagctgcagaagag 64
|||||||||||| || |||||||
Sbjct: 281 ttgaggaagaagttgaagaagag 303
>PTA.sd.9590.C1 nseq=21
Length = 3166
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 45 aggaagaagctgcagaaga 63
|||| ||||||||||||||
Sbjct: 781 aggaggaagctgcagaaga 799
>PTA.sd.8902.C1 nseq=27
Length = 1860
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 233 ttctctccgttgagg 247
|||||||||||||||
Sbjct: 479 ttctctccgttgagg 493
>PTA.sd.8050.C1 nseq=13
Length = 1831
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 116 cttttgccagccttt 130
|||||||||||||||
Sbjct: 177 cttttgccagccttt 191
>PTA.sd.7994.C1 nseq=2
Length = 3084
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 192 atattttgtttcttc 206
|||||||||||||||
Sbjct: 2714 atattttgtttcttc 2700
>PTA.sd.7493.C1 nseq=57
Length = 2641
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 195 ttttgtttcttcatc 209
|||||||||||||||
Sbjct: 2423 ttttgtttcttcatc 2409
>PTA.sd.7319.C1 nseq=5
Length = 2138
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 192 atattttgtttcttcatca 210
||||||| |||||||||||
Sbjct: 1966 atattttttttcttcatca 1984
>PTA.sd.7297.C1 nseq=10
Length = 2415
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 41 gttgaggaagaagct 55
|||||||||||||||
Sbjct: 1515 gttgaggaagaagct 1529
>PTA.sd.6157.C1 nseq=5
Length = 1190
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 45 aggaagaagctgcagaaga 63
|||||||||||| ||||||
Sbjct: 260 aggaagaagctggagaaga 278
>PTA.sd.5933.C1 nseq=10
Length = 2280
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 89 ctgttcggttaaaat 103
|||||||||||||||
Sbjct: 1629 ctgttcggttaaaat 1615
>PTA.sd.5822.C1 nseq=2
Length = 5200
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 191 gatattttgtttctt 205
|||||||||||||||
Sbjct: 1054 gatattttgtttctt 1068
>PTA.sd.5575.C1 nseq=4
Length = 1709
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 193 tattttgtttcttca 207
|||||||||||||||
Sbjct: 1556 tattttgtttcttca 1570
>PTA.sd.5348.C1 nseq=4
Length = 2014
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 tttgtttcttcatca 210
|||||||||||||||
Sbjct: 1870 tttgtttcttcatca 1884
>PTA.sd.5301.C1 nseq=17
Length = 2949
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 255 tgaacccaattatattggt 273
||||||||||||| |||||
Sbjct: 2076 tgaacccaattatgttggt 2094
>PTA.sd.5188.C1 nseq=8
Length = 2828
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 45 aggaagaagctgcagaaga 63
||||| |||||||||||||
Sbjct: 742 aggaaaaagctgcagaaga 760
>PTA.sd.5170.C1 nseq=11
Length = 1857
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 226 ttttaatttctctccgttg 244
|||||||||||||| ||||
Sbjct: 380 ttttaatttctctctgttg 398
>PTA.sd.4554.C1 nseq=38
Length = 1345
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 11 gagtctggtggagca 25
|||||||||||||||
Sbjct: 330 gagtctggtggagca 344
>PTA.sd.4201.C1 nseq=5
Length = 3608
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 209 caaaactacctttct 223
|||||||||||||||
Sbjct: 3538 caaaactacctttct 3524
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 298
length of database: 39,126,732
effective HSP length: 16
effective length of query: 282
effective length of database: 38,700,540
effective search space: 10913552280
effective search space used: 10913552280
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)