BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_16527
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g44120.F 589 e-168
PTA.sd.17277.C1 nseq=6 36 0.14
PTA.sd.15391.C1 nseq=6 36 0.14
PTA.sd.6319.C1 nseq=14 34 0.55
PTA.sd.17290.C1 nseq=3 34 0.55
PTA.sd.16813.C1 nseq=37 34 0.55
PTA.sd.12649.C1 nseq=12 34 0.55
PTA.sd.7791.C1 nseq=4 32 2.2
PTA.sd.4626.C1 nseq=4 32 2.2
PTA.sd.4528.C1 nseq=42 32 2.2
PTA.sd.3807.C1 nseq=2 32 2.2
PTA.sd.3428.C1 nseq=12 32 2.2
PTA.sd.15111.C2 nseq=177 32 2.2
PTA.sd.14022.C1 nseq=4 32 2.2
PTA.sd.12398.C1 nseq=13 32 2.2
>At1g44120.F
Length = 6345
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 cgatggagagagagttttggacaacgacggcgataaacgtagaaatagtgagaacgctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5621 cgatggagagagagttttggacaacgacggcgataaacgtagaaatagtgagaacgctaa 5680
Query: 61 acacgattctcacaacgtttccaaaactccgttcgtcggaagcagctaccgcttgtatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5681 acacgattctcacaacgtttccaaaactccgttcgtcggaagcagctaccgcttgtatcc 5740
Query: 121 ctcacttaatcggagctttgaaatccggcgagcaagaagcgagagattcggcgatggaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5741 ctcacttaatcggagctttgaaatccggcgagcaagaagcgagagattcggcgatggaca 5800
Query: 181 cgatctacacgttgcgacaatcgtggacaacaatgccgacggagacggctagatctcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5801 cgatctacacgttgcgacaatcgtggacaacaatgccgacggagacggctagatctcaag 5860
Query: 241 ctgttttagcggcggatgcgattccggttctgcaattgatgatgaaatcaaaattga 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5861 ctgttttagcggcggatgcgattccggttctgcaattgatgatgaaatcaaaattga 5917
>PTA.sd.17277.C1 nseq=6
Length = 1682
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 9 agagagttttggacaacg 26
||||||||||||||||||
Sbjct: 596 agagagttttggacaacg 613
>PTA.sd.15391.C1 nseq=6
Length = 1949
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 268 ttctgcaattgatgatga 285
||||||||||||||||||
Sbjct: 622 ttctgcaattgatgatga 605
>PTA.sd.6319.C1 nseq=14
Length = 1055
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 124 acttaatcggagctttg 140
|||||||||||||||||
Sbjct: 290 acttaatcggagctttg 274
>PTA.sd.17290.C1 nseq=3
Length = 1690
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4 tggagagagagttttgg 20
|||||||||||||||||
Sbjct: 1592 tggagagagagttttgg 1576
>PTA.sd.16813.C1 nseq=37
Length = 1549
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 268 ttctgcaattgatgatgaaat 288
||||||||||||||| |||||
Sbjct: 281 ttctgcaattgatgaggaaat 301
>PTA.sd.12649.C1 nseq=12
Length = 1828
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 209 aacaatgccgacggaga 225
|||||||||||||||||
Sbjct: 631 aacaatgccgacggaga 647
>PTA.sd.7791.C1 nseq=4
Length = 2134
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 263 tccggttctgcaattgatga 282
||||||||||| ||||||||
Sbjct: 75 tccggttctgccattgatga 56
>PTA.sd.4626.C1 nseq=4
Length = 1394
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 2 gatggagagagagttttgga 21
||||||||||||||| ||||
Sbjct: 1104 gatggagagagagttgtgga 1123
>PTA.sd.4528.C1 nseq=42
Length = 2351
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 92 ttcgtcggaagcagct 107
||||||||||||||||
Sbjct: 646 ttcgtcggaagcagct 631
>PTA.sd.3807.C1 nseq=2
Length = 1462
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 282 atgaaatcaaaattga 297
||||||||||||||||
Sbjct: 174 atgaaatcaaaattga 159
>PTA.sd.3428.C1 nseq=12
Length = 1077
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 6 gagagagagttttgga 21
||||||||||||||||
Sbjct: 264 gagagagagttttgga 249
>PTA.sd.15111.C2 nseq=177
Length = 2658
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 276 ttgatgatgaaatcaa 291
||||||||||||||||
Sbjct: 1120 ttgatgatgaaatcaa 1135
>PTA.sd.14022.C1 nseq=4
Length = 1857
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 278 gatgatgaaatcaaaa 293
||||||||||||||||
Sbjct: 1637 gatgatgaaatcaaaa 1652
>PTA.sd.12398.C1 nseq=13
Length = 1465
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 6 gagagagagttttgga 21
||||||||||||||||
Sbjct: 180 gagagagagttttgga 165
>At4g36470.F
Length = 1116
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 3 atggagagagagtttt 18
||||||||||||||||
Sbjct: 16 atggagagagagtttt 31
>At4g16680.F
Length = 2652
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 282 atgaaatcaaaattga 297
||||||||||||||||
Sbjct: 1796 atgaaatcaaaattga 1781
>PTA.sd.8138.C1 nseq=13
Length = 1227
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 283 tgaaatcaaaattga 297
|||||||||||||||
Sbjct: 1012 tgaaatcaaaattga 998
>PTA.sd.6076.C1 nseq=35
Length = 1992
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 131 cggagctttgaaatc 145
|||||||||||||||
Sbjct: 167 cggagctttgaaatc 153
>PTA.sd.5878.C1 nseq=55
Length = 952
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 280 tgatgaaatcaaaat 294
|||||||||||||||
Sbjct: 937 tgatgaaatcaaaat 923
>PTA.sd.4787.C1 nseq=9
Length = 3683
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 64 cgattctcacaacgtttcc 82
|||||||||||||| ||||
Sbjct: 3464 cgattctcacaacgattcc 3446
>PTA.sd.4785.C1 nseq=12
Length = 3658
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 113 ttgtatccctcacttaatc 131
||||||||||||| |||||
Sbjct: 2912 ttgtatccctcacataatc 2930
>PTA.sd.4183.C1 nseq=3
Length = 1338
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 215 gccgacggagacggc 229
|||||||||||||||
Sbjct: 207 gccgacggagacggc 221
>PTA.sd.17453.C1 nseq=13
Length = 1535
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 5 ggagagagagttttg 19
|||||||||||||||
Sbjct: 998 ggagagagagttttg 1012
>PTA.sd.17446.C1 nseq=5
Length = 773
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 199 aatcgtggacaacaa 213
|||||||||||||||
Sbjct: 212 aatcgtggacaacaa 226
>PTA.sd.16507.C1 nseq=2
Length = 1254
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 32 gataaacgtagaaat 46
|||||||||||||||
Sbjct: 505 gataaacgtagaaat 491
>PTA.sd.16489.C1 nseq=4
Length = 3652
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 32 gataaacgtagaaat 46
|||||||||||||||
Sbjct: 3125 gataaacgtagaaat 3111
>PTA.sd.16187.C1 nseq=15
Length = 2281
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 277 tgatgatgaaatcaa 291
|||||||||||||||
Sbjct: 22 tgatgatgaaatcaa 8
>PTA.sd.1550.C1 nseq=12
Length = 1484
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 282 atgaaatcaaaattg 296
|||||||||||||||
Sbjct: 1456 atgaaatcaaaattg 1470
>PTA.sd.15181.C1 nseq=4
Length = 1725
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 196 gacaatcgtggacaacaat 214
|||||||||||| ||||||
Sbjct: 108 gacaatcgtggaaaacaat 126
>PTA.sd.13732.C1 nseq=8
Length = 2372
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 2 gatggagagagagtt 16
|||||||||||||||
Sbjct: 271 gatggagagagagtt 257
>PTA.sd.1337.C1 nseq=8
Length = 3519
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 270 ctgcaattgatgatg 284
|||||||||||||||
Sbjct: 2433 ctgcaattgatgatg 2447
>PTA.sd.12715.C1 nseq=6
Length = 3249
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 263 tccggttctgcaatt 277
|||||||||||||||
Sbjct: 3127 tccggttctgcaatt 3113
>PTA.sd.12407.C1 nseq=5
Length = 1589
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 149 cgagcaagaagcgagagat 167
||||||||||| |||||||
Sbjct: 286 cgagcaagaagtgagagat 268
>PTA.sd.11715.C1 nseq=49
Length = 952
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 232 gatctcaagctgttt 246
|||||||||||||||
Sbjct: 226 gatctcaagctgttt 240
>PTA.sd.10919.C1 nseq=2
Length = 1142
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 2 gatggagagagagtt 16
|||||||||||||||
Sbjct: 243 gatggagagagagtt 229
>PTA.sd.10885.C1 nseq=6
Length = 1852
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 279 atgatgaaatcaaaa 293
|||||||||||||||
Sbjct: 1091 atgatgaaatcaaaa 1105
>PTA.sd.10697.C1 nseq=6
Length = 2357
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 67 ttctcacaacgtttc 81
|||||||||||||||
Sbjct: 332 ttctcacaacgtttc 318
>PTA.sd.10116.C1 nseq=20
Length = 1138
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 72 acaacgtttccaaaa 86
|||||||||||||||
Sbjct: 1106 acaacgtttccaaaa 1092
>At5g35280.F
Length = 618
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 275 attgatgatgaaatc 289
|||||||||||||||
Sbjct: 259 attgatgatgaaatc 273
>At5g17430.F
Length = 1746
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 gagagttttggacaa 24
|||||||||||||||
Sbjct: 604 gagagttttggacaa 618
>At5g06080.F
Length = 534
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 aacaatgccgacgga 223
|||||||||||||||
Sbjct: 433 aacaatgccgacgga 447
>At4g39790.F
Length = 1896
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 218 gacggagacggctag 232
|||||||||||||||
Sbjct: 318 gacggagacggctag 332
>At4g19470.F
Length = 1254
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 233 atctcaagctgtttt 247
|||||||||||||||
Sbjct: 50 atctcaagctgtttt 64
>At4g07430.F
Length = 729
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 275 attgatgatgaaatc 289
|||||||||||||||
Sbjct: 370 attgatgatgaaatc 384
>At4g07310.F
Length = 729
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 275 attgatgatgaaatc 289
|||||||||||||||
Sbjct: 370 attgatgatgaaatc 384
>At3g15170.F
Length = 933
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 264 ccggttctgcaattg 278
|||||||||||||||
Sbjct: 593 ccggttctgcaattg 607
>At2g43960.F
Length = 1266
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 58 taaacacgattctca 72
|||||||||||||||
Sbjct: 705 taaacacgattctca 719
>At2g05860.F
Length = 717
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 275 attgatgatgaaatc 289
|||||||||||||||
Sbjct: 370 attgatgatgaaatc 384
>At1g72480.F
Length = 1530
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 156 gaagcgagagattcg 170
|||||||||||||||
Sbjct: 74 gaagcgagagattcg 88
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)