BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_16490
(296 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01330.F 587 e-167
PTA.sd.4081.C1 nseq=8 34 0.55
PTA.sd.16827.C1 nseq=5 34 0.55
At4g19960.F PTA.sd.12256.singlet 32 2.2
PTA.sd.6980.C1 nseq=4 32 2.2
PTA.sd.4805.C1 nseq=24 32 2.2
PTA.sd.4561.C1 nseq=6 32 2.2
PTA.sd.4144.C1 nseq=2 32 2.2
PTA.sd.14471.C2 nseq=20 32 2.2
PTA.sd.14470.C1 nseq=4 32 2.2
PTA.sd.1336.C1 nseq=20 32 2.2
PTA.sd.12166.C1 nseq=3 32 2.2
orF111a.F 32 2.2
At3g59100.F 32 2.2
At1g03370.F PTA.sd.167.singlet 30 8.6
>At1g01330.F
Length = 2148
Score = 587 bits (296), Expect = e-167
Identities = 296/296 (100%)
Strand = Plus / Plus
Query: 1 aagtcgatgcggtttcttcagaggctgatactgctgcatctttgcaatccgatgctgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1850 aagtcgatgcggtttcttcagaggctgatactgctgcatctttgcaatccgatgctgaga 1909
Query: 61 agaatgctcaagaaaatgtgctcatcttgaagaatttgttgtctgatgcagccttcactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1910 agaatgctcaagaaaatgtgctcatcttgaagaatttgttgtctgatgcagccttcactc 1969
Query: 121 gcctaaaagagtcagatactggacttcatcacaaggttttacactacaacttcaatttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1970 gcctaaaagagtcagatactggacttcatcacaaggttttacactacaacttcaatttgt 2029
Query: 181 tgctctatgtttatttacttaattgtgtgctaactaagaatatttgctccagtctttgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2030 tgctctatgtttatttacttaattgtgtgctaactaagaatatttgctccagtctttgca 2089
Query: 241 agaacttgtcgacttggcacagaattattatactgaagttgctattccgaaactgg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2090 agaacttgtcgacttggcacagaattattatactgaagttgctattccgaaactgg 2145
>PTA.sd.4081.C1 nseq=8
Length = 1687
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 268 ttatactgaagttgcta 284
|||||||||||||||||
Sbjct: 656 ttatactgaagttgcta 672
>PTA.sd.16827.C1 nseq=5
Length = 3175
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 88 tgaagaatttgttgtct 104
|||||||||||||||||
Sbjct: 178 tgaagaatttgttgtct 162
>At4g19960.F PTA.sd.12256.singlet
Length = 2529
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 52 atgctgagaagaatgc 67
||||||||||||||||
Sbjct: 953 atgctgagaagaatgc 938
>PTA.sd.6980.C1 nseq=4
Length = 1995
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 63 aatgctcaagaaaatg 78
||||||||||||||||
Sbjct: 1131 aatgctcaagaaaatg 1146
>PTA.sd.4805.C1 nseq=24
Length = 3282
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 236 ttgcaagaacttgtcgactt 255
||||||||||||| ||||||
Sbjct: 1292 ttgcaagaacttgacgactt 1311
>PTA.sd.4561.C1 nseq=6
Length = 6432
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 32 tgctgcatctttgcaa 47
||||||||||||||||
Sbjct: 804 tgctgcatctttgcaa 789
>PTA.sd.4144.C1 nseq=2
Length = 1731
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 79 tgctcatcttgaagaa 94
||||||||||||||||
Sbjct: 1362 tgctcatcttgaagaa 1377
>PTA.sd.14471.C2 nseq=20
Length = 1233
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 83 catcttgaagaatttg 98
||||||||||||||||
Sbjct: 1183 catcttgaagaatttg 1168
>PTA.sd.14470.C1 nseq=4
Length = 1517
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 83 catcttgaagaatttg 98
||||||||||||||||
Sbjct: 1480 catcttgaagaatttg 1495
>PTA.sd.1336.C1 nseq=20
Length = 2118
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 79 tgctcatcttgaagaa 94
||||||||||||||||
Sbjct: 1483 tgctcatcttgaagaa 1498
>PTA.sd.12166.C1 nseq=3
Length = 5673
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 86 cttgaagaatttgttg 101
||||||||||||||||
Sbjct: 2194 cttgaagaatttgttg 2209
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 cttgaagaatttgtt 100
|||||||||||||||
Sbjct: 1879 cttgaagaatttgtt 1893
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 87 ttgaagaatttgttg 101
|||||||||||||||
Sbjct: 2807 ttgaagaatttgttg 2821
>orF111a.F
Length = 336
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 151 acaaggttttacacta 166
||||||||||||||||
Sbjct: 98 acaaggttttacacta 113
>At3g59100.F
Length = 5427
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 124 taaaagagtcagatac 139
||||||||||||||||
Sbjct: 1614 taaaagagtcagatac 1599
>At1g03370.F PTA.sd.167.singlet
Length = 5580
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 82 tcatcttgaagaatt 96
|||||||||||||||
Sbjct: 285 tcatcttgaagaatt 299
>PTA.sd.9300.C1 nseq=8
Length = 1682
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 56 tgagaagaatgctca 70
|||||||||||||||
Sbjct: 856 tgagaagaatgctca 842
>PTA.sd.8552.C1 nseq=3
Length = 5865
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 6 gatgcggtttcttca 20
|||||||||||||||
Sbjct: 5482 gatgcggtttcttca 5496
>PTA.sd.8238.C1 nseq=8
Length = 1814
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 53 tgctgagaagaatgc 67
|||||||||||||||
Sbjct: 569 tgctgagaagaatgc 583
>PTA.sd.8196.C1 nseq=8
Length = 1663
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 84 atcttgaagaatttg 98
|||||||||||||||
Sbjct: 1123 atcttgaagaatttg 1137
>PTA.sd.5785.C1 nseq=17
Length = 3193
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 251 gacttggcacagaat 265
|||||||||||||||
Sbjct: 585 gacttggcacagaat 599
>PTA.sd.5597.C1 nseq=3
Length = 2780
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 ctcatcttgaagaat 95
|||||||||||||||
Sbjct: 971 ctcatcttgaagaat 985
>PTA.sd.4582.C1 nseq=4
Length = 5481
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 gaatgctcaagaaaa 76
|||||||||||||||
Sbjct: 4034 gaatgctcaagaaaa 4048
>PTA.sd.4442.C1 nseq=33
Length = 1748
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 102 tctgatgcagccttc 116
|||||||||||||||
Sbjct: 258 tctgatgcagccttc 244
>PTA.sd.3138.C1 nseq=10
Length = 2946
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 270 atactgaagttgcta 284
|||||||||||||||
Sbjct: 387 atactgaagttgcta 401
>PTA.sd.2560.C1 nseq=7
Length = 2474
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 236 ttgcaagaacttgtcgact 254
||||| |||||||||||||
Sbjct: 2208 ttgcaggaacttgtcgact 2190
>PTA.sd.2275.C1 nseq=6
Length = 5899
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 79 tgctcatcttgaaga 93
|||||||||||||||
Sbjct: 1595 tgctcatcttgaaga 1581
>PTA.sd.2263.C1 nseq=6
Length = 2418
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 224 ttgctccagtctttg 238
|||||||||||||||
Sbjct: 1877 ttgctccagtctttg 1863
>PTA.sd.18005.C1 nseq=36
Length = 1669
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 27 gatactgctgcatct 41
|||||||||||||||
Sbjct: 447 gatactgctgcatct 461
>PTA.sd.17321.C1 nseq=3
Length = 1626
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 167 caacttcaatttgtt 181
|||||||||||||||
Sbjct: 823 caacttcaatttgtt 809
>PTA.sd.17006.C1 nseq=11
Length = 2367
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 175 atttgttgctctatg 189
|||||||||||||||
Sbjct: 1831 atttgttgctctatg 1845
>PTA.sd.16628.C1 nseq=10
Length = 1742
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 60 aagaatgctcaagaa 74
|||||||||||||||
Sbjct: 457 aagaatgctcaagaa 471
>PTA.sd.1646.C1 nseq=27
Length = 2449
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 54 gctgagaagaatgct 68
|||||||||||||||
Sbjct: 394 gctgagaagaatgct 408
>PTA.sd.15595.C1 nseq=5
Length = 935
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 85 tcttgaagaatttgttgtc 103
|||||| ||||||||||||
Sbjct: 259 tcttgatgaatttgttgtc 241
>PTA.sd.15193.C1 nseq=5
Length = 1517
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 12 gtttcttcagaggct 26
|||||||||||||||
Sbjct: 47 gtttcttcagaggct 61
>PTA.sd.14998.C1 nseq=8
Length = 1166
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 142 gacttcatcacaagg 156
|||||||||||||||
Sbjct: 525 gacttcatcacaagg 511
>PTA.sd.14377.C1 nseq=5
Length = 1006
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 87 ttgaagaatttgttg 101
|||||||||||||||
Sbjct: 598 ttgaagaatttgttg 612
>PTA.sd.14372.C1 nseq=5
Length = 1843
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 agaatttgttgtctg 105
|||||||||||||||
Sbjct: 771 agaatttgttgtctg 785
>PTA.sd.13717.C1 nseq=6
Length = 1449
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 51 gatgctgagaagaat 65
|||||||||||||||
Sbjct: 384 gatgctgagaagaat 370
>PTA.sd.13663.C1 nseq=11
Length = 1548
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 51 gatgctgagaagaat 65
|||||||||||||||
Sbjct: 421 gatgctgagaagaat 407
>PTA.sd.13543.C1 nseq=6
Length = 896
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 142 gacttcatcacaagg 156
|||||||||||||||
Sbjct: 365 gacttcatcacaagg 351
>PTA.sd.12635.C1 nseq=2
Length = 2546
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 86 cttgaagaatttgtt 100
|||||||||||||||
Sbjct: 491 cttgaagaatttgtt 477
>PTA.sd.12475.C2 nseq=8
Length = 2157
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 274 tgaagttgctattcc 288
|||||||||||||||
Sbjct: 2020 tgaagttgctattcc 2034
>PTA.sd.12069.C1 nseq=29
Length = 878
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 6 gatgcggtttcttcagagg 24
|||| ||||||||||||||
Sbjct: 121 gatgaggtttcttcagagg 139
>PTA.sd.120.C1 nseq=12
Length = 1953
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 101 gtctgatgcagcctt 115
|||||||||||||||
Sbjct: 1395 gtctgatgcagcctt 1381
>PTA.sd.11327.C1 nseq=16
Length = 898
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 238 gcaagaacttgtcga 252
|||||||||||||||
Sbjct: 667 gcaagaacttgtcga 653
>At5g33340.F
Length = 1314
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 50 cgatgctgagaagaa 64
|||||||||||||||
Sbjct: 1029 cgatgctgagaagaa 1043
>At5g11470.F
Length = 2076
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 60 aagaatgctcaagaaaatg 78
||||| |||||||||||||
Sbjct: 952 aagaaagctcaagaaaatg 970
>At4g32200.F
Length = 4659
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 13 tttcttcagaggctg 27
|||||||||||||||
Sbjct: 630 tttcttcagaggctg 644
>At4g19790.F
Length = 846
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 atttgttgtctgatg 108
|||||||||||||||
Sbjct: 476 atttgttgtctgatg 490
>At4g17450.F
Length = 4302
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 atttgttgtctgatg 108
|||||||||||||||
Sbjct: 1697 atttgttgtctgatg 1711
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 296
length of database: 39,126,732
effective HSP length: 16
effective length of query: 280
effective length of database: 38,700,540
effective search space: 10836151200
effective search space used: 10836151200
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)