BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_16486
(296 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01180.F PTA.sd.13.singlet 587 e-167
At1g64180.F PTA.sd.3435.singlet 34 0.55
PTA.sd.4160.C1 nseq=4 32 2.2
PTA.sd.208.C1 nseq=11 32 2.2
PTA.sd.17551.C1 nseq=7 32 2.2
PTA.sd.14643.C1 nseq=11 32 2.2
PTA.sd.1435.C1 nseq=3 32 2.2
PTA.sd.14079.C1 nseq=7 32 2.2
PTA.sd.11341.C1 nseq=8 32 2.2
PTA.sd.9742.C1 nseq=7 30 8.6
PTA.sd.8734.C1 nseq=6 30 8.6
PTA.sd.8689.C1 nseq=7 30 8.6
PTA.sd.7172.C1 nseq=10 30 8.6
PTA.sd.5954.C1 nseq=3 30 8.6
PTA.sd.464.C1 nseq=2 30 8.6
>At1g01180.F PTA.sd.13.singlet
Length = 1437
Score = 587 bits (296), Expect = e-167
Identities = 296/296 (100%)
Strand = Plus / Plus
Query: 1 tttatgcaaaacgtggttatctcggatttttccggttcgatattgccggttcctttctcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tttatgcaaaacgtggttatctcggatttttccggttcgatattgccggttcctttctcg 651
Query: 61 accggttcggctttggagaagctgtgtgagtggggagtgacggcggacctggtggagata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 accggttcggctttggagaagctgtgtgagtggggagtgacggcggacctggtggagata 711
Query: 121 gacgcgggtcacgattttaattcggcatgggcggatataaaccgggcggttcggatactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gacgcgggtcacgattttaattcggcatgggcggatataaaccgggcggttcggatactc 771
Query: 181 cgacccggcggtgttatatttggtcacgattatttcacggcggcggataatagaggagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 cgacccggcggtgttatatttggtcacgattatttcacggcggcggataatagaggagtg 831
Query: 241 aggagagccgtgaatctgttcgcagagattaaccggttaaaggtcaaaaccgatgg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 aggagagccgtgaatctgttcgcagagattaaccggttaaaggtcaaaaccgatgg 887
>At1g64180.F PTA.sd.3435.singlet
Length = 2151
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 67 tcggctttggagaagct 83
|||||||||||||||||
Sbjct: 1111 tcggctttggagaagct 1127
>PTA.sd.4160.C1 nseq=4
Length = 3536
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 72 tttggagaagctgtgt 87
||||||||||||||||
Sbjct: 2656 tttggagaagctgtgt 2641
>PTA.sd.208.C1 nseq=11
Length = 2840
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 25 gatttttccggttcga 40
||||||||||||||||
Sbjct: 75 gatttttccggttcga 90
>PTA.sd.17551.C1 nseq=7
Length = 2852
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 71 ctttggagaagctgtg 86
||||||||||||||||
Sbjct: 1680 ctttggagaagctgtg 1695
>PTA.sd.14643.C1 nseq=11
Length = 1974
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 65 gttcggctttggagaa 80
||||||||||||||||
Sbjct: 982 gttcggctttggagaa 997
>PTA.sd.1435.C1 nseq=3
Length = 702
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 231 tagaggagtgaggaga 246
||||||||||||||||
Sbjct: 20 tagaggagtgaggaga 5
>PTA.sd.14079.C1 nseq=7
Length = 4332
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 248 ccgtgaatctgttcgc 263
||||||||||||||||
Sbjct: 1322 ccgtgaatctgttcgc 1307
>PTA.sd.11341.C1 nseq=8
Length = 719
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 68 cggctttggagaagct 83
||||||||||||||||
Sbjct: 181 cggctttggagaagct 196
>PTA.sd.9742.C1 nseq=7
Length = 1405
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 213 tttcacggcggcgga 227
|||||||||||||||
Sbjct: 67 tttcacggcggcgga 53
>PTA.sd.8734.C1 nseq=6
Length = 3027
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 165 ggcggttcggatact 179
|||||||||||||||
Sbjct: 2516 ggcggttcggatact 2530
>PTA.sd.8689.C1 nseq=7
Length = 2195
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 76 gagaagctgtgtgag 90
|||||||||||||||
Sbjct: 1673 gagaagctgtgtgag 1687
>PTA.sd.7172.C1 nseq=10
Length = 1173
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 atagaggagtgagga 244
|||||||||||||||
Sbjct: 336 atagaggagtgagga 350
>PTA.sd.5954.C1 nseq=3
Length = 960
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 213 tttcacggcggcgga 227
|||||||||||||||
Sbjct: 417 tttcacggcggcgga 403
>PTA.sd.464.C1 nseq=2
Length = 1174
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 8 aaaacgtggttatct 22
|||||||||||||||
Sbjct: 582 aaaacgtggttatct 596
>PTA.sd.17190.C1 nseq=9
Length = 3151
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 74 tggagaagctgtgtg 88
|||||||||||||||
Sbjct: 952 tggagaagctgtgtg 966
>PTA.sd.15071.C1 nseq=8
Length = 872
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 213 tttcacggcggcgga 227
|||||||||||||||
Sbjct: 479 tttcacggcggcgga 465
>PTA.sd.14562.C1 nseq=12
Length = 2469
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 72 tttggagaagctgtg 86
|||||||||||||||
Sbjct: 1484 tttggagaagctgtg 1498
>PTA.sd.14304.C1 nseq=6
Length = 1537
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 232 agaggagtgaggaga 246
|||||||||||||||
Sbjct: 1264 agaggagtgaggaga 1278
>PTA.sd.13734.C1 nseq=17
Length = 1951
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 232 agaggagtgaggaga 246
|||||||||||||||
Sbjct: 1502 agaggagtgaggaga 1516
>PTA.sd.12859.C1 nseq=4
Length = 1138
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 255 tctgttcgcagagat 269
|||||||||||||||
Sbjct: 840 tctgttcgcagagat 854
>PTA.sd.10820.C1 nseq=2
Length = 848
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 atagaggagtgagga 244
|||||||||||||||
Sbjct: 212 atagaggagtgagga 226
>At5g45810.F
Length = 1452
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 265 gagattaaccggtta 279
|||||||||||||||
Sbjct: 760 gagattaaccggtta 774
>At5g41250.F
Length = 1686
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 69 ggctttggagaagct 83
|||||||||||||||
Sbjct: 646 ggctttggagaagct 660
>At4g08020.F
Length = 1371
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 72 tttggagaagctgtgtgag 90
||||| |||||||||||||
Sbjct: 1141 tttggggaagctgtgtgag 1123
>At2g04640.F
Length = 621
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 22 tcggatttttccggttcga 40
||||||||||| |||||||
Sbjct: 26 tcggatttttcgggttcga 44
>At1g70750.F
Length = 2250
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 212 atttcacggcggcgg 226
|||||||||||||||
Sbjct: 824 atttcacggcggcgg 838
>At1g67000.F
Length = 2154
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 259 ttcgcagagattaac 273
|||||||||||||||
Sbjct: 406 ttcgcagagattaac 420
>At1g22130.F
Length = 1008
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 93 gggagtgacggcgga 107
|||||||||||||||
Sbjct: 930 gggagtgacggcgga 944
>At1g18410.F
Length = 3246
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 gctttggagaagctg 84
|||||||||||||||
Sbjct: 2745 gctttggagaagctg 2731
>At1g09720.F
Length = 2844
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 48 ggttcctttctcgac 62
|||||||||||||||
Sbjct: 539 ggttcctttctcgac 525
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 296
length of database: 39,126,732
effective HSP length: 16
effective length of query: 280
effective length of database: 38,700,540
effective search space: 10836151200
effective search space used: 10836151200
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)