BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_15560
(283 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g28580.F 561 e-159
At4g40020.F 48 3e-05
At1g12720.F 42 0.002
PTA.sd.16776.C1 nseq=9 38 0.034
At1g17780.F PTA.sd.1306.singlet 34 0.53
PTA.sd.2747.C1 nseq=5 34 0.53
At4g04310.F 34 0.53
At1g80260.F PTA.sd.4660.singlet 32 2.1
At1g02840.F PTA.sd.146.singlet 32 2.1
PTA.sd.6789.C1 nseq=7 32 2.1
PTA.sd.6318.C1 nseq=19 32 2.1
PTA.sd.4842.C1 nseq=29 32 2.1
PTA.sd.4197.C1 nseq=2 32 2.1
PTA.sd.16998.C1 nseq=45 32 2.1
PTA.sd.1511.C1 nseq=3 32 2.1
>At5g28580.F
Length = 345
Score = 561 bits (283), Expect = e-159
Identities = 283/283 (100%)
Strand = Plus / Plus
Query: 1 atgatccccatccagcaagtccttgtgattgtggttgagtttgtgctgccgatgattgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgatccccatccagcaagtccttgtgattgtggttgagtttgtgctgccgatgattgtg 60
Query: 61 gttgaggatgtgcttgtggttgtgattgtgatcgaacatgagctcttgatgatgctcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttgaggatgtgcttgtggttgtgattgtgatcgaacatgagctcttgatgatgctcttt 120
Query: 121 gtctttgtgatccttgagctcttgcaccttgtgatccttgtgcttgttgcggttgtgatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtctttgtgatccttgagctcttgcaccttgtgatccttgtgcttgttgcggttgtgatc 180
Query: 181 cttgtgatccttatgcttgttgcagttgtgatccttgtgatccttgtacttgttgcggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cttgtgatccttatgcttgttgcagttgtgatccttgtgatccttgtacttgttgcggtt 240
Query: 241 gtgatccttgtgatccttgtacgtattgcggttgtgatccttg 283
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgatccttgtgatccttgtacgtattgcggttgtgatccttg 283
>At4g40020.F
Length = 1848
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 69 tgtgcttgtggttgtgattgtgat 92
||||||||||||||||||||||||
Sbjct: 1399 tgtgcttgtggttgtgattgtgat 1376
>At1g12720.F
Length = 1758
Score = 42.1 bits (21), Expect = 0.002
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 74 ttgtggttgtgattgtgatcgaacatgagctcttgat 110
||||| ||||| || ||||| ||||||||||||||||
Sbjct: 1712 ttgtgcttgtgcttctgatctaacatgagctcttgat 1676
Score = 30.2 bits (15), Expect = 8.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 72 gcttgtggttgtgattgtg 90
||||||||||| |||||||
Sbjct: 1726 gcttgtggttgagattgtg 1708
Score = 30.2 bits (15), Expect = 8.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 29 ttgtggttgagtttgtgct 47
||||||||||| |||||||
Sbjct: 1724 ttgtggttgagattgtgct 1706
Score = 30.2 bits (15), Expect = 8.2
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 56 ttgtggttgaggatgtgcttgtg 78
||||||||||| ||||||||||
Sbjct: 1724 ttgtggttgagattgtgcttgtg 1702
>PTA.sd.16776.C1 nseq=9
Length = 1325
Score = 38.2 bits (19), Expect = 0.034
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 22 cttgtgattgtggttgagtttgt 44
|||||||||||| ||||||||||
Sbjct: 28 cttgtgattgtgattgagtttgt 6
>At1g17780.F PTA.sd.1306.singlet
Length = 666
Score = 34.2 bits (17), Expect = 0.53
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 82 gtgattgtgatcgaaca 98
|||||||||||||||||
Sbjct: 71 gtgattgtgatcgaaca 87
>PTA.sd.2747.C1 nseq=5
Length = 3259
Score = 34.2 bits (17), Expect = 0.53
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 62 ttgaggatgtgcttgtg 78
|||||||||||||||||
Sbjct: 170 ttgaggatgtgcttgtg 186
>At4g04310.F
Length = 3036
Score = 34.2 bits (17), Expect = 0.53
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 161 tgcttgttgcggttgtg 177
|||||||||||||||||
Sbjct: 440 tgcttgttgcggttgtg 424
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 229 cttgttgcggttgtg 243
|||||||||||||||
Sbjct: 438 cttgttgcggttgtg 424
>At1g80260.F PTA.sd.4660.singlet
Length = 2517
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 113 tgctctttgtctttgt 128
||||||||||||||||
Sbjct: 896 tgctctttgtctttgt 881
>At1g02840.F PTA.sd.146.singlet
Length = 852
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 126 tgtgatccttgagctcttgc 145
||||||||||||| ||||||
Sbjct: 466 tgtgatccttgagatcttgc 447
>PTA.sd.6789.C1 nseq=7
Length = 2337
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 74 ttgtggttgtgattgt 89
||||||||||||||||
Sbjct: 2284 ttgtggttgtgattgt 2299
>PTA.sd.6318.C1 nseq=19
Length = 4118
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 116 tctttgtctttgtgat 131
||||||||||||||||
Sbjct: 2059 tctttgtctttgtgat 2044
>PTA.sd.4842.C1 nseq=29
Length = 2118
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 229 cttgttgcggttgtga 244
||||||||||||||||
Sbjct: 1450 cttgttgcggttgtga 1465
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 163 cttgttgcggttgtga 178
||||||||||||||||
Sbjct: 1450 cttgttgcggttgtga 1465
>PTA.sd.4197.C1 nseq=2
Length = 1171
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 74 ttgtggttgtgattgtgatc 93
|||||||||||||| |||||
Sbjct: 170 ttgtggttgtgattctgatc 151
>PTA.sd.16998.C1 nseq=45
Length = 7019
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 70 gtgcttgtggttgtga 85
||||||||||||||||
Sbjct: 443 gtgcttgtggttgtga 458
>PTA.sd.1511.C1 nseq=3
Length = 3245
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 113 tgctctttgtctttgt 128
||||||||||||||||
Sbjct: 1235 tgctctttgtctttgt 1220
>PTA.sd.15005.C1 nseq=25
Length = 628
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 106 ttgatgatgctctttgtctt 125
||||||||||||| ||||||
Sbjct: 501 ttgatgatgctctatgtctt 520
>PTA.sd.13130.C1 nseq=2
Length = 2579
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 116 tctttgtctttgtgatcctt 135
||||| ||||||||||||||
Sbjct: 1137 tctttctctttgtgatcctt 1118
>PTA.sd.12371.C1 nseq=25
Length = 1144
Score = 32.2 bits (16), Expect = 2.1
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 69 tgtgcttgtggttgtgattgtgat 92
|||| ||||| |||||||||||||
Sbjct: 109 tgtgattgtgattgtgattgtgat 132
Score = 30.2 bits (15), Expect = 8.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 74 ttgtggttgtgattgtgat 92
||||| |||||||||||||
Sbjct: 108 ttgtgattgtgattgtgat 126
>PTA.sd.11248.C1 nseq=3
Length = 2066
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 126 tgtgatccttgagctcttgc 145
||||||||||||| ||||||
Sbjct: 570 tgtgatccttgaggtcttgc 551
>PTA.sd.10408.C1 nseq=8
Length = 2183
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 84 gattgtgatcgaacat 99
||||||||||||||||
Sbjct: 1114 gattgtgatcgaacat 1129
>PTA.sd.1032.C1 nseq=3
Length = 2135
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 229 cttgttgcggttgtga 244
||||||||||||||||
Sbjct: 1557 cttgttgcggttgtga 1572
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 163 cttgttgcggttgtga 178
||||||||||||||||
Sbjct: 1557 cttgttgcggttgtga 1572
>At5g46590.F
Length = 879
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 239 ttgtgatccttgtgat 254
||||||||||||||||
Sbjct: 432 ttgtgatccttgtgat 417
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 206 ttgtgatccttgtgat 221
||||||||||||||||
Sbjct: 432 ttgtgatccttgtgat 417
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 173 ttgtgatccttgtgat 188
||||||||||||||||
Sbjct: 432 ttgtgatccttgtgat 417
>At3g30210.F
Length = 831
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 69 tgtgcttgtggttgtg 84
||||||||||||||||
Sbjct: 479 tgtgcttgtggttgtg 464
>At2g20460.F
Length = 4386
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 218 tgatccttgtacttgt 233
||||||||||||||||
Sbjct: 633 tgatccttgtacttgt 648
>At2g13970.F
Length = 1794
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 145 caccttgtgatccttg 160
||||||||||||||||
Sbjct: 1465 caccttgtgatccttg 1450
>At4g36860.F PTA.sd.13596.singlet
Length = 1629
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 ttgttgcagttgtga 211
|||||||||||||||
Sbjct: 822 ttgttgcagttgtga 836
>PTA.sd.9621.C1 nseq=20
Length = 1885
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 9 catccagcaagtcct 23
|||||||||||||||
Sbjct: 1119 catccagcaagtcct 1105
>PTA.sd.8638.C1 nseq=13
Length = 2121
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 116 tctttgtctttgtga 130
|||||||||||||||
Sbjct: 81 tctttgtctttgtga 67
>PTA.sd.7947.C1 nseq=11
Length = 992
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 197 ttgttgcagttgtga 211
|||||||||||||||
Sbjct: 415 ttgttgcagttgtga 401
>PTA.sd.7237.C1 nseq=10
Length = 1627
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 ggatgtgcttgtggt 80
|||||||||||||||
Sbjct: 667 ggatgtgcttgtggt 681
>PTA.sd.719.C1 nseq=5
Length = 3825
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 147 ccttgtgatccttgt 161
|||||||||||||||
Sbjct: 1207 ccttgtgatccttgt 1221
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 246 ccttgtgatccttgt 260
|||||||||||||||
Sbjct: 1207 ccttgtgatccttgt 1221
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 213 ccttgtgatccttgt 227
|||||||||||||||
Sbjct: 1207 ccttgtgatccttgt 1221
>PTA.sd.6775.C1 nseq=48
Length = 1489
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 104 tcttgatgatgctct 118
|||||||||||||||
Sbjct: 160 tcttgatgatgctct 146
>PTA.sd.6372.C1 nseq=9
Length = 5038
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 145 caccttgtgatcctt 159
|||||||||||||||
Sbjct: 189 caccttgtgatcctt 175
>PTA.sd.6110.C1 nseq=4
Length = 1068
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 57 tgtggttgaggatgt 71
|||||||||||||||
Sbjct: 443 tgtggttgaggatgt 457
>PTA.sd.5839.C1 nseq=3
Length = 1565
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 105 cttgatgatgctctt 119
|||||||||||||||
Sbjct: 754 cttgatgatgctctt 740
>PTA.sd.5217.C1 nseq=3
Length = 1686
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 cttgatgatgctctt 119
|||||||||||||||
Sbjct: 392 cttgatgatgctctt 406
>PTA.sd.4233.C1 nseq=2
Length = 2958
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 73 cttgtggttgtgatt 87
|||||||||||||||
Sbjct: 2869 cttgtggttgtgatt 2883
>PTA.sd.3433.C1 nseq=60
Length = 838
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 129 gatccttgagctctt 143
|||||||||||||||
Sbjct: 163 gatccttgagctctt 149
>PTA.sd.2356.C1 nseq=10
Length = 2198
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 129 gatccttgagctctt 143
|||||||||||||||
Sbjct: 317 gatccttgagctctt 331
>PTA.sd.1996.C1 nseq=5
Length = 600
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 75 tgtggttgtgattgt 89
|||||||||||||||
Sbjct: 430 tgtggttgtgattgt 444
>PTA.sd.17638.C1 nseq=5
Length = 1577
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 gtgcttgtggttgtg 84
|||||||||||||||
Sbjct: 1029 gtgcttgtggttgtg 1015
>PTA.sd.17082.C1 nseq=7
Length = 2835
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 222 ccttgtacttgttgc 236
|||||||||||||||
Sbjct: 2177 ccttgtacttgttgc 2163
>PTA.sd.17064.C1 nseq=5
Length = 832
Score = 30.2 bits (15), Expect = 8.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 72 gcttgtggttgtgattgtg 90
||||||||||||| |||||
Sbjct: 107 gcttgtggttgtggttgtg 125
>PTA.sd.16837.C1 nseq=3
Length = 1422
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 16 caagtccttgtgatt 30
|||||||||||||||
Sbjct: 1375 caagtccttgtgatt 1361
>PTA.sd.15615.C1 nseq=13
Length = 2304
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 121 gtctttgtgatcctt 135
|||||||||||||||
Sbjct: 1722 gtctttgtgatcctt 1736
>PTA.sd.1520.C1 nseq=24
Length = 3406
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 3 gatccccatccagca 17
|||||||||||||||
Sbjct: 1518 gatccccatccagca 1504
>PTA.sd.14298.C1 nseq=3
Length = 3085
Score = 30.2 bits (15), Expect = 8.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 29 ttgtggttgagtttgtgct 47
||||| |||||||||||||
Sbjct: 2958 ttgtgtttgagtttgtgct 2976
>PTA.sd.14246.C1 nseq=10
Length = 907
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 gatgctctttgtctt 125
|||||||||||||||
Sbjct: 818 gatgctctttgtctt 832
>PTA.sd.13541.C1 nseq=5
Length = 11389
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 9 catccagcaagtcct 23
|||||||||||||||
Sbjct: 2111 catccagcaagtcct 2097
>PTA.sd.13496.C1 nseq=8
Length = 1667
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 114 gctctttgtctttgt 128
|||||||||||||||
Sbjct: 85 gctctttgtctttgt 99
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 283
length of database: 39,126,732
effective HSP length: 16
effective length of query: 267
effective length of database: 38,700,540
effective search space: 10333044180
effective search space used: 10333044180
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)