BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_15004
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g27010.F 589 e-168
PTA.sd.4037.C1 nseq=3 224 3e-58
PTA.sd.1426.C1 nseq=5 36 0.14
PTA.sd.1333.C1 nseq=21 34 0.55
PTA.sd.9758.C1 nseq=17 32 2.2
PTA.sd.8649.C1 nseq=3 32 2.2
PTA.sd.7751.C1 nseq=9 32 2.2
PTA.sd.5993.C1 nseq=4 32 2.2
PTA.sd.3465.C1 nseq=13 32 2.2
PTA.sd.3081.C1 nseq=9 32 2.2
PTA.sd.1619.C1 nseq=7 32 2.2
PTA.sd.1388.C1 nseq=10 32 2.2
PTA.sd.1113.C1 nseq=5 32 2.2
At4g03170.F 32 2.2
At3g56640.F 32 2.2
>At4g27010.F
Length = 7608
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 tcattgaaggaccacaagaggagactatggtagcaaagtttctacgctggctgtcggctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6995 tcattgaaggaccacaagaggagactatggtagcaaagtttctacgctggctgtcggctt 7054
Query: 61 cagttattcttgggaagtcttattctaaagccagtgattcggacccaacattcttaagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7055 cagttattcttgggaagtcttattctaaagccagtgattcggacccaacattcttaagta 7114
Query: 121 aaacaaaaccagaaactttgctgacatcgttagaatactttaagaaaaggaatctcgaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7115 aaacaaaaccagaaactttgctgacatcgttagaatactttaagaaaaggaatctcgaag 7174
Query: 181 acagcatgcaaaattcagagcacataataggggaagtaattgtgcacctccaacagttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7175 acagcatgcaaaattcagagcacataataggggaagtaattgtgcacctccaacagttcc 7234
Query: 241 tgagtacaaactacatgtttcttcttccctctgttgtatttgcactttctctcatgc 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235 tgagtacaaactacatgtttcttcttccctctgttgtatttgcactttctctcatgc 7291
>PTA.sd.4037.C1 nseq=3
Length = 8334
Score = 224 bits (113), Expect = 3e-58
Identities = 238/279 (85%), Gaps = 3/279 (1%)
Strand = Plus / Plus
Query: 21 gagactatggtagcaaagtttctacgctggctgtcggcttcagttattcttgggaagtct 80
|||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| |
Sbjct: 7582 gagactatggtagcaaagtttctacggtggctgttggcttcagtgattcttgggaagctt 7641
Query: 81 tattctaaagccagtgattcggacccaacattcttaagtaaaacaaaaccagaaactttg 140
|| ||| |||| | ||||||||||| | | |||| || ||||||| ||||||||||||
Sbjct: 7642 tactctgaagctaatgattcggaccagatagtcttgagcgaaacaaagccagaaactttg 7701
Query: 141 ctgacatcgttagaatactttaagaaaaggaatctcgaagacagcatgcaaaattcagag 200
| |||| |||||||||||| ||||||||||||||| ||| |||| || |||||| |||
Sbjct: 7702 ccaacattgttagaatacttgaagaaaaggaatctccaaggcagcgtgacaaattcggag 7761
Query: 201 cacataataggggaagtaattgtgcacctccaa---cagttcctgagtacaaactacatg 257
|||||||||||||||||||| ||| | |||||| || | ||| ||| ||||||| |
Sbjct: 7762 cacataataggggaagtaatcgtgtatctccaaaagcatctgctgtgtagaaactacggg 7821
Query: 258 tttcttcttccctctgttgtatttgcactttctctcatg 296
||||||||||||||||||||||||||||||||||||||
Sbjct: 7822 gttcttcttccctctgttgtatttgcactttctctcatg 7860
>PTA.sd.1426.C1 nseq=5
Length = 1793
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 120 aaaacaaaaccagaaact 137
||||||||||||||||||
Sbjct: 1711 aaaacaaaaccagaaact 1694
>PTA.sd.1333.C1 nseq=21
Length = 2084
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 119 taaaacaaaaccagaaa 135
|||||||||||||||||
Sbjct: 1351 taaaacaaaaccagaaa 1335
>PTA.sd.9758.C1 nseq=17
Length = 940
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 115 taagtaaaacaaaacc 130
||||||||||||||||
Sbjct: 585 taagtaaaacaaaacc 600
>PTA.sd.8649.C1 nseq=3
Length = 2368
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 71 tgggaagtcttattct 86
||||||||||||||||
Sbjct: 700 tgggaagtcttattct 685
>PTA.sd.7751.C1 nseq=9
Length = 1702
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 122 aacaaaaccagaaact 137
||||||||||||||||
Sbjct: 975 aacaaaaccagaaact 990
>PTA.sd.5993.C1 nseq=4
Length = 1136
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 121 aaacaaaaccagaaac 136
||||||||||||||||
Sbjct: 637 aaacaaaaccagaaac 622
>PTA.sd.3465.C1 nseq=13
Length = 2030
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 257 gtttcttcttccctct 272
||||||||||||||||
Sbjct: 5 gtttcttcttccctct 20
>PTA.sd.3081.C1 nseq=9
Length = 1402
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 277 tatttgcactttctct 292
||||||||||||||||
Sbjct: 502 tatttgcactttctct 487
>PTA.sd.1619.C1 nseq=7
Length = 1591
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 224 gcacctccaacagttcctga 243
||||||||||||||| ||||
Sbjct: 963 gcacctccaacagttgctga 944
>PTA.sd.1388.C1 nseq=10
Length = 3035
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 254 catgtttcttcttccc 269
||||||||||||||||
Sbjct: 489 catgtttcttcttccc 504
>PTA.sd.1113.C1 nseq=5
Length = 2646
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 237 ttcctgagtacaaact 252
||||||||||||||||
Sbjct: 2340 ttcctgagtacaaact 2355
>At4g03170.F
Length = 753
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 257 gtttcttcttccctct 272
||||||||||||||||
Sbjct: 239 gtttcttcttccctct 224
>At3g56640.F
Length = 2370
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 258 tttcttcttccctctg 273
||||||||||||||||
Sbjct: 697 tttcttcttccctctg 682
>At3g43060.F
Length = 1758
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 268 cctctgttgtatttgc 283
||||||||||||||||
Sbjct: 1048 cctctgttgtatttgc 1033
>At3g24780.F
Length = 2148
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 146 atcgttagaatacttt 161
||||||||||||||||
Sbjct: 933 atcgttagaatacttt 918
>At1g27660.F
Length = 1362
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 20 ggagactatggtagca 35
||||||||||||||||
Sbjct: 517 ggagactatggtagca 532
>At1g11040.F
Length = 1317
Score = 32.2 bits (16), Expect = 2.2
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 169 ggaatctcgaagacagcatgcaaa 192
||||| || |||||||||||||||
Sbjct: 37 ggaatttccaagacagcatgcaaa 60
>PTA.sd.936.C1 nseq=8
Length = 1806
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 262 ttcttccctctgttg 276
|||||||||||||||
Sbjct: 561 ttcttccctctgttg 575
>PTA.sd.9339.C1 nseq=9
Length = 1349
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 278 atttgcactttctct 292
|||||||||||||||
Sbjct: 728 atttgcactttctct 714
>PTA.sd.8193.C1 nseq=6
Length = 2717
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 122 aacaaaaccagaaac 136
|||||||||||||||
Sbjct: 989 aacaaaaccagaaac 1003
>PTA.sd.7131.C1 nseq=8
Length = 2196
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 117 agtaaaacaaaacca 131
|||||||||||||||
Sbjct: 1794 agtaaaacaaaacca 1808
>PTA.sd.7105.C1 nseq=6
Length = 904
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 253 acatgtttcttcttc 267
|||||||||||||||
Sbjct: 821 acatgtttcttcttc 835
>PTA.sd.7009.C1 nseq=4
Length = 1590
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 165 aaaaggaatctcgaa 179
|||||||||||||||
Sbjct: 834 aaaaggaatctcgaa 848
>PTA.sd.6445.C1 nseq=3
Length = 1943
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 agagcacataatagg 211
|||||||||||||||
Sbjct: 852 agagcacataatagg 866
>PTA.sd.6211.C1 nseq=3
Length = 1238
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 253 acatgtttcttcttc 267
|||||||||||||||
Sbjct: 290 acatgtttcttcttc 304
>PTA.sd.5835.C1 nseq=5
Length = 845
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 158 ctttaagaaaaggaa 172
|||||||||||||||
Sbjct: 477 ctttaagaaaaggaa 463
>PTA.sd.497.C1 nseq=6
Length = 1132
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 23 gactatggtagcaaa 37
|||||||||||||||
Sbjct: 616 gactatggtagcaaa 602
>PTA.sd.4612.C1 nseq=6
Length = 2389
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 164 gaaaaggaatctcga 178
|||||||||||||||
Sbjct: 160 gaaaaggaatctcga 146
>PTA.sd.4457.C1 nseq=8
Length = 1722
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 258 tttcttcttccctct 272
|||||||||||||||
Sbjct: 91 tttcttcttccctct 77
>PTA.sd.3677.C1 nseq=6
Length = 2774
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 116 aagtaaaacaaaacc 130
|||||||||||||||
Sbjct: 2744 aagtaaaacaaaacc 2758
>PTA.sd.3381.C1 nseq=2
Length = 1978
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 263 tcttccctctgttgt 277
|||||||||||||||
Sbjct: 352 tcttccctctgttgt 338
>PTA.sd.2848.C1 nseq=3
Length = 2053
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 254 catgtttcttcttcc 268
|||||||||||||||
Sbjct: 1581 catgtttcttcttcc 1567
>PTA.sd.2800.C1 nseq=19
Length = 2561
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 162 aagaaaaggaatctc 176
|||||||||||||||
Sbjct: 1652 aagaaaaggaatctc 1666
>PTA.sd.23.C1 nseq=3
Length = 968
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 agttattcttgggaa 76
|||||||||||||||
Sbjct: 436 agttattcttgggaa 450
>PTA.sd.2243.C1 nseq=15
Length = 1129
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 107 aacattcttaagtaa 121
|||||||||||||||
Sbjct: 988 aacattcttaagtaa 974
>PTA.sd.17857.C1 nseq=3
Length = 572
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 257 gtttcttcttccctc 271
|||||||||||||||
Sbjct: 109 gtttcttcttccctc 95
>PTA.sd.151.C1 nseq=5
Length = 1961
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 122 aacaaaaccagaaac 136
|||||||||||||||
Sbjct: 803 aacaaaaccagaaac 789
>PTA.sd.14790.C1 nseq=8
Length = 1384
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 259 ttcttcttccctctg 273
|||||||||||||||
Sbjct: 585 ttcttcttccctctg 571
>PTA.sd.14687.C1 nseq=8
Length = 1509
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 280 ttgcactttctctca 294
|||||||||||||||
Sbjct: 1119 ttgcactttctctca 1133
>PTA.sd.1392.C1 nseq=4
Length = 1749
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 111 ttcttaagtaaaaca 125
|||||||||||||||
Sbjct: 1650 ttcttaagtaaaaca 1636
>PTA.sd.13632.C1 nseq=4
Length = 1165
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 254 catgtttcttcttcc 268
|||||||||||||||
Sbjct: 870 catgtttcttcttcc 856
>PTA.sd.12806.C1 nseq=5
Length = 1645
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 30 gtagcaaagtttcta 44
|||||||||||||||
Sbjct: 1603 gtagcaaagtttcta 1617
>PTA.sd.12785.C1 nseq=35
Length = 3329
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 258 tttcttcttccctct 272
|||||||||||||||
Sbjct: 206 tttcttcttccctct 220
>PTA.sd.11120.C1 nseq=15
Length = 3104
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 259 ttcttcttccctctgttgt 277
|||||||||||||| ||||
Sbjct: 175 ttcttcttccctcttttgt 193
>PTA.sd.10915.C1 nseq=2
Length = 1198
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 cagttattcttggga 75
|||||||||||||||
Sbjct: 800 cagttattcttggga 814
>PTA.sd.10905.C1 nseq=6
Length = 954
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 172 atctcgaagacagca 186
|||||||||||||||
Sbjct: 217 atctcgaagacagca 203
>PTA.sd.10790.C1 nseq=20
Length = 1848
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 185 catgcaaaattcaga 199
|||||||||||||||
Sbjct: 1308 catgcaaaattcaga 1322
>PTA.sd.10697.C1 nseq=6
Length = 2357
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 261 cttcttccctctgtt 275
|||||||||||||||
Sbjct: 2072 cttcttccctctgtt 2058
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)