BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_14592
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.17401.C1 nseq=7 589 e-168
PTA.sd.12351.C1 nseq=15 38 0.035
PTA.sd.11701.C1 nseq=26 34 0.55
At5g17940.F 32 2.2
At3g12420.F 32 2.2
At5g58510.F PTA.sd.17369.singlet 30 8.6
At4g27250.F PTA.sd.12807.singlet 30 8.6
At4g16141.F PTA.sd.11968.singlet 30 8.6
At4g13970.F PTA.sd.11793.singlet 30 8.6
At1g69220.F PTA.sd.3820.singlet 30 8.6
PTA.sd.7375.C1 nseq=10 30 8.6
PTA.sd.6135.C1 nseq=11 30 8.6
PTA.sd.5653.C1 nseq=12 30 8.6
PTA.sd.5382.C1 nseq=5 30 8.6
PTA.sd.5009.C1 nseq=8 30 8.6
>PTA.sd.17401.C1 nseq=7
Length = 840
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 gttggattagggcgtgacgatatgttcttttggaaacaagtgggaaaagcattgctatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gttggattagggcgtgacgatatgttcttttggaaacaagtgggaaaagcattgctatgc 251
Query: 61 acttacacaatctttggtatggcttggatttacaatgaaacgtctcctttaggttggtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 acttacacaatctttggtatggcttggatttacaatgaaacgtctcctttaggttggtgg 311
Query: 121 acgctgaagccaagaccaaaggaagagagagaattggctcatttgtatgagcggcgtgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 acgctgaagccaagaccaaaggaagagagagaattggctcatttgtatgagcggcgtgag 371
Query: 181 tttccttatcctggtgatacagaggctatggaggattttgttgcaaaggggggaatgatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tttccttatcctggtgatacagaggctatggaggattttgttgcaaaggggggaatgatt 431
Query: 241 ggtactgcaattggaccgaaaggaattgttgagtccgaaggtgaggctgataattac 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ggtactgcaattggaccgaaaggaattgttgagtccgaaggtgaggctgataattac 488
>PTA.sd.12351.C1 nseq=15
Length = 1336
Score = 38.2 bits (19), Expect = 0.035
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 211 gaggattttgttgcaaagg 229
|||||||||||||||||||
Sbjct: 683 gaggattttgttgcaaagg 701
>PTA.sd.11701.C1 nseq=26
Length = 1211
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 277 gaaggtgaggctgataattac 297
||||||||| |||||||||||
Sbjct: 165 gaaggtgagactgataattac 185
>At5g17940.F
Length = 1284
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 120 gacgctgaagccaaga 135
||||||||||||||||
Sbjct: 82 gacgctgaagccaaga 67
>At3g12420.F
Length = 927
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 183 tccttatcctggtgat 198
||||||||||||||||
Sbjct: 498 tccttatcctggtgat 513
>At5g58510.F PTA.sd.17369.singlet
Length = 2958
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 tatggaggattttgt 221
|||||||||||||||
Sbjct: 1080 tatggaggattttgt 1094
>At4g27250.F PTA.sd.12807.singlet
Length = 1218
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 140 aggaagagagagaat 154
|||||||||||||||
Sbjct: 1061 aggaagagagagaat 1075
>At4g16141.F PTA.sd.11968.singlet
Length = 681
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 201 agaggctatggagga 215
|||||||||||||||
Sbjct: 611 agaggctatggagga 625
>At4g13970.F PTA.sd.11793.singlet
Length = 2028
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 tggaggattttgttg 223
|||||||||||||||
Sbjct: 1136 tggaggattttgttg 1150
>At1g69220.F PTA.sd.3820.singlet
Length = 2511
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 214 gattttgttgcaaag 228
|||||||||||||||
Sbjct: 1432 gattttgttgcaaag 1446
>PTA.sd.7375.C1 nseq=10
Length = 2484
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 148 agagaattggctcat 162
|||||||||||||||
Sbjct: 1007 agagaattggctcat 1021
>PTA.sd.6135.C1 nseq=11
Length = 3237
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 197 atacagaggctatgg 211
|||||||||||||||
Sbjct: 164 atacagaggctatgg 150
>PTA.sd.5653.C1 nseq=12
Length = 1359
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 142 gaagagagagaattg 156
|||||||||||||||
Sbjct: 507 gaagagagagaattg 521
>PTA.sd.5382.C1 nseq=5
Length = 818
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 143 aagagagagaattgg 157
|||||||||||||||
Sbjct: 709 aagagagagaattgg 723
>PTA.sd.5009.C1 nseq=8
Length = 2258
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 ttttggaaacaagtg 42
|||||||||||||||
Sbjct: 2198 ttttggaaacaagtg 2212
>PTA.sd.4870.C1 nseq=4
Length = 985
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 ttttggaaacaagtg 42
|||||||||||||||
Sbjct: 969 ttttggaaacaagtg 983
>PTA.sd.4486.C1 nseq=6
Length = 1591
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 217 tttgttgcaaagggg 231
|||||||||||||||
Sbjct: 577 tttgttgcaaagggg 591
>PTA.sd.3756.C1 nseq=2
Length = 1101
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 68 caatctttggtatgg 82
|||||||||||||||
Sbjct: 469 caatctttggtatgg 483
>PTA.sd.29.C1 nseq=6
Length = 1688
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 197 atacagaggctatggagga 215
|||| ||||||||||||||
Sbjct: 245 atacggaggctatggagga 227
>PTA.sd.2886.C1 nseq=6
Length = 3239
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 133 agaccaaaggaagag 147
|||||||||||||||
Sbjct: 2596 agaccaaaggaagag 2610
>PTA.sd.2736.C1 nseq=2
Length = 1472
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 37 caagtgggaaaagca 51
|||||||||||||||
Sbjct: 532 caagtgggaaaagca 518
>PTA.sd.2527.C1 nseq=4
Length = 1650
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 215 attttgttgcaaagg 229
|||||||||||||||
Sbjct: 497 attttgttgcaaagg 511
>PTA.sd.2046.C1 nseq=6
Length = 1010
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 139 aaggaagagagagaa 153
|||||||||||||||
Sbjct: 19 aaggaagagagagaa 5
>PTA.sd.1769.C1 nseq=2
Length = 3793
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 276 cgaaggtgaggctga 290
|||||||||||||||
Sbjct: 3016 cgaaggtgaggctga 3030
>PTA.sd.17261.C1 nseq=5
Length = 2549
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 200 cagaggctatggagg 214
|||||||||||||||
Sbjct: 2033 cagaggctatggagg 2047
>PTA.sd.16127.C1 nseq=2
Length = 612
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 138 aaaggaagagagaga 152
|||||||||||||||
Sbjct: 104 aaaggaagagagaga 90
>PTA.sd.16114.C1 nseq=22
Length = 1977
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 131 caagaccaaaggaag 145
|||||||||||||||
Sbjct: 1883 caagaccaaaggaag 1869
>PTA.sd.1601.C1 nseq=4
Length = 2066
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 266 ttgttgagtccgaag 280
|||||||||||||||
Sbjct: 1780 ttgttgagtccgaag 1766
>PTA.sd.15368.C1 nseq=3
Length = 1630
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 141 ggaagagagagaatt 155
|||||||||||||||
Sbjct: 1383 ggaagagagagaatt 1397
>PTA.sd.15204.C1 nseq=9
Length = 1732
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 101 cgtctcctttaggtt 115
|||||||||||||||
Sbjct: 881 cgtctcctttaggtt 867
>PTA.sd.14769.C1 nseq=8
Length = 1575
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 34 aaacaagtgggaaaagcat 52
|||||| ||||||||||||
Sbjct: 325 aaacaaatgggaaaagcat 343
>PTA.sd.14288.C1 nseq=7
Length = 2375
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 143 aagagagagaattgg 157
|||||||||||||||
Sbjct: 57 aagagagagaattgg 43
>PTA.sd.13894.C1 nseq=4
Length = 1486
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 153 attggctcatttgta 167
|||||||||||||||
Sbjct: 1341 attggctcatttgta 1355
>PTA.sd.12798.C1 nseq=8
Length = 1178
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 23 tgttcttttggaaac 37
|||||||||||||||
Sbjct: 105 tgttcttttggaaac 119
>PTA.sd.11990.C1 nseq=2
Length = 729
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 211 gaggattttgttgca 225
|||||||||||||||
Sbjct: 199 gaggattttgttgca 185
>PTA.sd.11513.C1 nseq=9
Length = 1390
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 139 aaggaagagagagaa 153
|||||||||||||||
Sbjct: 798 aaggaagagagagaa 812
>PTA.sd.11325.C1 nseq=3
Length = 2092
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 25 ttcttttggaaacaa 39
|||||||||||||||
Sbjct: 290 ttcttttggaaacaa 304
>PTA.sd.11003.C1 nseq=59
Length = 1048
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 aagccaagaccaaag 141
|||||||||||||||
Sbjct: 790 aagccaagaccaaag 804
>PTA.sd.10042.C1 nseq=6
Length = 2117
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 142 gaagagagagaattg 156
|||||||||||||||
Sbjct: 451 gaagagagagaattg 437
>At5g36020.F
Length = 2166
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 tatggaggattttgt 221
|||||||||||||||
Sbjct: 1416 tatggaggattttgt 1430
>At4g20810.F
Length = 1251
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 173 ggcgtgagtttcctt 187
|||||||||||||||
Sbjct: 854 ggcgtgagtttcctt 840
>At4g19320.F
Length = 2166
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 tatggaggattttgt 221
|||||||||||||||
Sbjct: 1416 tatggaggattttgt 1430
>At3g19060.F
Length = 4944
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 tggtgatacagaggc 206
|||||||||||||||
Sbjct: 198 tggtgatacagaggc 212
>At2g25390.F
Length = 405
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 232 ggaatgattggtact 246
|||||||||||||||
Sbjct: 190 ggaatgattggtact 204
>At2g13930.F
Length = 4008
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 143 aagagagagaattggctca 161
|||||||||||||| ||||
Sbjct: 521 aagagagagaattgtctca 539
>At1g63850.F
Length = 1647
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 28 ttttggaaacaagtg 42
|||||||||||||||
Sbjct: 991 ttttggaaacaagtg 977
>At1g35760.F
Length = 2814
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 gttggattagggcgt 15
|||||||||||||||
Sbjct: 1546 gttggattagggcgt 1532
>At1g22000.F
Length = 2184
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 201 agaggctatggagga 215
|||||||||||||||
Sbjct: 1180 agaggctatggagga 1194
>At1g08150.F
Length = 2448
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 259 aaaggaattgttgag 273
|||||||||||||||
Sbjct: 1276 aaaggaattgttgag 1290
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)