BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_14546
(295 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.9613.C1 nseq=2 571 e-162
PTA.sd.7385.C1 nseq=5 36 0.14
PTA.sd.10981.C1 nseq=2 36 0.14
PTA.sd.641.C2 nseq=5 34 0.55
PTA.sd.15511.C1 nseq=11 34 0.55
At4g24650.F 34 0.55
At4g08660.F 34 0.55
At4g05210.F PTA.sd.11391.singlet 32 2.2
PTA.sd.9250.C1 nseq=3 32 2.2
PTA.sd.7994.C1 nseq=2 32 2.2
PTA.sd.3208.C1 nseq=2 32 2.2
PTA.sd.17402.C1 nseq=16 32 2.2
PTA.sd.17335.C1 nseq=9 32 2.2
PTA.sd.16930.C1 nseq=11 32 2.2
PTA.sd.1510.C1 nseq=15 32 2.2
>PTA.sd.9613.C1 nseq=2
Length = 468
Score = 571 bits (288), Expect = e-162
Identities = 295/296 (99%), Gaps = 1/296 (0%)
Strand = Plus / Plus
Query: 1 cgaatacctccgttacctccactacttggattcacggagcaatcatggagtcaacacgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 cgaatacctccgttacctccactacttggattcacggagcaatcatggagtcaacacgtt 178
Query: 61 tggatcttacgatgaaatctttggtctagttctcggtaattcatcctcttgtacgcggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tggatcttacgatgaaatctttggtctagttctcggtaattcatcctcttgtacgcggtg 238
Query: 121 gcttaacgcaggggaggaacttccggtggtggag-tttacggctgaggaaatgatggaga 179
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 239 gcttaacgcaggggaggaacttccggtggtggagttttacggctgaggaaatgatggaga 298
Query: 180 gaggtttagtggtttgtgctatatgtagagaggagcttgctgctaatgagaggctctcag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gaggtttagtggtttgtgctatatgtagagaggagcttgctgctaatgagaggctctcag 358
Query: 240 agcttccttgtcggcattattaccataaagagtgtatctcgaattggttgagtaat 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agcttccttgtcggcattattaccataaagagtgtatctcgaattggttgagtaat 414
>PTA.sd.7385.C1 nseq=5
Length = 1235
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 149 gtggagtttacggctgag 166
||||||||||||||||||
Sbjct: 415 gtggagtttacggctgag 398
>PTA.sd.10981.C1 nseq=2
Length = 1246
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 149 gtggagtttacggctgag 166
||||||||||||||||||
Sbjct: 351 gtggagtttacggctgag 334
>PTA.sd.641.C2 nseq=5
Length = 1832
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 161 gctgaggaaatgatgga 177
|||||||||||||||||
Sbjct: 1345 gctgaggaaatgatgga 1329
>PTA.sd.15511.C1 nseq=11
Length = 973
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 136 ggaacttccggtggtggagtt 156
||||||||||||| |||||||
Sbjct: 236 ggaacttccggtgttggagtt 216
>At4g24650.F
Length = 957
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 56 acgtttggatcttacgatgaa 76
|||||||||||||| ||||||
Sbjct: 468 acgtttggatcttatgatgaa 488
>At4g08660.F
Length = 2145
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 149 gtggagtttacggctga 165
|||||||||||||||||
Sbjct: 316 gtggagtttacggctga 332
>At4g05210.F PTA.sd.11391.singlet
Length = 900
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 13 ttacctccactacttg 28
||||||||||||||||
Sbjct: 224 ttacctccactacttg 209
>PTA.sd.9250.C1 nseq=3
Length = 1739
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 7 cctccgttacctccac 22
||||||||||||||||
Sbjct: 1252 cctccgttacctccac 1267
>PTA.sd.7994.C1 nseq=2
Length = 3084
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 164 gaggaaatgatggaga 179
||||||||||||||||
Sbjct: 2173 gaggaaatgatggaga 2188
>PTA.sd.3208.C1 nseq=2
Length = 1354
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 16 cctccactacttggattcac 35
||||||||||||| ||||||
Sbjct: 1242 cctccactacttgaattcac 1223
>PTA.sd.17402.C1 nseq=16
Length = 2167
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 21 actacttggattcacg 36
||||||||||||||||
Sbjct: 1133 actacttggattcacg 1148
>PTA.sd.17335.C1 nseq=9
Length = 2423
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 199 tatatgtagagaggagcttg 218
|||||||||||| |||||||
Sbjct: 244 tatatgtagagaagagcttg 225
>PTA.sd.16930.C1 nseq=11
Length = 1720
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 168 aaatgatggagagagg 183
||||||||||||||||
Sbjct: 490 aaatgatggagagagg 475
>PTA.sd.1510.C1 nseq=15
Length = 1981
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 162 ctgaggaaatgatgga 177
||||||||||||||||
Sbjct: 567 ctgaggaaatgatgga 582
>PTA.sd.11370.C1 nseq=12
Length = 2840
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 167 gaaatgatggagagag 182
||||||||||||||||
Sbjct: 2644 gaaatgatggagagag 2659
>At5g18180.F
Length = 570
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 71 gatgaaatctttggtc 86
||||||||||||||||
Sbjct: 259 gatgaaatctttggtc 274
>At2g26050.F
Length = 666
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 166 ggaaatgatggagaga 181
||||||||||||||||
Sbjct: 420 ggaaatgatggagaga 435
>At1g31840.F
Length = 2538
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 171 tgatggagagaggttt 186
||||||||||||||||
Sbjct: 728 tgatggagagaggttt 743
>At1g53870.F PTA.sd.2910.singlet
Length = 711
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 71 gatgaaatctttggt 85
|||||||||||||||
Sbjct: 105 gatgaaatctttggt 119
>PTA.sd.982.C1 nseq=12
Length = 2412
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 73 tgaaatctttggtct 87
|||||||||||||||
Sbjct: 2272 tgaaatctttggtct 2258
>PTA.sd.9608.C1 nseq=8
Length = 1721
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 221 gctaatgagaggctc 235
|||||||||||||||
Sbjct: 462 gctaatgagaggctc 476
>PTA.sd.8348.C1 nseq=10
Length = 1453
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 138 aacttccggtggtgg 152
|||||||||||||||
Sbjct: 947 aacttccggtggtgg 961
>PTA.sd.8117.C1 nseq=2
Length = 1218
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 165 aggaaatgatggaga 179
|||||||||||||||
Sbjct: 711 aggaaatgatggaga 725
>PTA.sd.7500.C1 nseq=5
Length = 1513
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 82 tggtctagttctcgg 96
|||||||||||||||
Sbjct: 98 tggtctagttctcgg 84
>PTA.sd.7288.C1 nseq=22
Length = 590
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 97 taattcatcctcttg 111
|||||||||||||||
Sbjct: 326 taattcatcctcttg 340
>PTA.sd.7261.C1 nseq=10
Length = 3989
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 66 cttacgatgaaatctttgg 84
||||||| |||||||||||
Sbjct: 1070 cttacgaggaaatctttgg 1052
>PTA.sd.668.C1 nseq=28
Length = 3739
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 182 ggtttagtggtttgt 196
|||||||||||||||
Sbjct: 1227 ggtttagtggtttgt 1241
>PTA.sd.3940.C1 nseq=13
Length = 5086
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 cttccggtggtggag 154
|||||||||||||||
Sbjct: 694 cttccggtggtggag 680
>PTA.sd.3791.C1 nseq=7
Length = 3645
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 117 ggtggcttaacgcag 131
|||||||||||||||
Sbjct: 2128 ggtggcttaacgcag 2142
>PTA.sd.2449.C1 nseq=10
Length = 3396
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 182 ggtttagtggtttgt 196
|||||||||||||||
Sbjct: 590 ggtttagtggtttgt 604
>PTA.sd.2198.C1 nseq=4
Length = 728
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 199 tatatgtagagagga 213
|||||||||||||||
Sbjct: 602 tatatgtagagagga 588
>PTA.sd.216.C1 nseq=3
Length = 2320
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 252 ggcattattaccata 266
|||||||||||||||
Sbjct: 1390 ggcattattaccata 1376
>PTA.sd.17064.C1 nseq=5
Length = 832
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 137 gaacttccggtggtg 151
|||||||||||||||
Sbjct: 539 gaacttccggtggtg 553
>PTA.sd.16592.C1 nseq=5
Length = 1365
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 77 atctttggtctagtt 91
|||||||||||||||
Sbjct: 1282 atctttggtctagtt 1296
>PTA.sd.16510.C1 nseq=2
Length = 3747
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 187 agtggtttgtgctat 201
|||||||||||||||
Sbjct: 2722 agtggtttgtgctat 2736
>PTA.sd.16386.C1 nseq=7
Length = 1985
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 148 ggtggagtttacggc 162
|||||||||||||||
Sbjct: 328 ggtggagtttacggc 314
>PTA.sd.16352.C1 nseq=11
Length = 5224
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 218 gctgctaatgagagg 232
|||||||||||||||
Sbjct: 1303 gctgctaatgagagg 1317
>PTA.sd.16345.C1 nseq=10
Length = 2175
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 168 aaatgatggagagag 182
|||||||||||||||
Sbjct: 1844 aaatgatggagagag 1858
>PTA.sd.15742.C1 nseq=14
Length = 1860
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 100 ttcatcctcttgtac 114
|||||||||||||||
Sbjct: 960 ttcatcctcttgtac 946
>PTA.sd.13644.C1 nseq=11
Length = 1815
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 aatcatggagtcaac 55
|||||||||||||||
Sbjct: 525 aatcatggagtcaac 511
>PTA.sd.13494.C1 nseq=8
Length = 874
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 cttccggtggtggag 154
|||||||||||||||
Sbjct: 164 cttccggtggtggag 150
>PTA.sd.12804.C1 nseq=2
Length = 2401
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 232 gctctcagagcttccttgt 250
||||||| |||||||||||
Sbjct: 1628 gctctcacagcttccttgt 1610
>PTA.sd.11798.C1 nseq=6
Length = 523
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 140 cttccggtggtggag 154
|||||||||||||||
Sbjct: 282 cttccggtggtggag 296
>PTA.sd.1035.C1 nseq=2
Length = 1344
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 207 gagaggagcttgctgctaa 225
||||||||||| |||||||
Sbjct: 1201 gagaggagcttcctgctaa 1219
>At5g60870.F
Length = 1272
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 115 gcggtggcttaacgc 129
|||||||||||||||
Sbjct: 21 gcggtggcttaacgc 7
>At4g24580.F
Length = 2373
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 ggattcacggagcaa 42
|||||||||||||||
Sbjct: 2022 ggattcacggagcaa 2036
>At3g54830.F
Length = 1716
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 162 ctgaggaaatgatgg 176
|||||||||||||||
Sbjct: 1603 ctgaggaaatgatgg 1589
>At3g19060.F
Length = 4944
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 gaggagcttgctgct 223
|||||||||||||||
Sbjct: 4804 gaggagcttgctgct 4818
>At2g34400.F
Length = 1854
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 233 ctctcagagcttcct 247
|||||||||||||||
Sbjct: 1159 ctctcagagcttcct 1145
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 295
length of database: 39,126,732
effective HSP length: 16
effective length of query: 279
effective length of database: 38,700,540
effective search space: 10797450660
effective search space used: 10797450660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)