BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_14229
(299 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g32110.F 593 e-169
At4g27010.F 36 0.14
At2g22350.F 34 0.56
At1g30780.F PTA.sd.2153.singlet 32 2.2
PTA.sd.7963.C1 nseq=5 32 2.2
At4g22030.F 32 2.2
At2g37310.F 32 2.2
PTA.sd.9755.C1 nseq=4 30 8.7
PTA.sd.8947.C1 nseq=12 30 8.7
PTA.sd.8853.C1 nseq=12 30 8.7
PTA.sd.8638.C1 nseq=13 30 8.7
PTA.sd.6269.C1 nseq=3 30 8.7
PTA.sd.4995.C1 nseq=6 30 8.7
PTA.sd.484.C1 nseq=6 30 8.7
PTA.sd.4179.C1 nseq=9 30 8.7
>At3g32110.F
Length = 5736
Score = 593 bits (299), Expect = e-169
Identities = 299/299 (100%)
Strand = Plus / Plus
Query: 1 ggcgtgtgtggaaagtccaggcaccggaacgggtacgggtttttctttggttggtagtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4739 ggcgtgtgtggaaagtccaggcaccggaacgggtacgggtttttctttggttggtagtga 4798
Query: 61 accaagcaattatgacgaactccgagcgtaagagaaggcatttgtgtgattctgatgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4799 accaagcaattatgacgaactccgagcgtaagagaaggcatttgtgtgattctgatgttt 4858
Query: 121 gtcaagtttgtcgaggaggcatagaatcaatcctacatgttcttagggactgtcccgcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4859 gtcaagtttgtcgaggaggcatagaatcaatcctacatgttcttagggactgtcccgcta 4918
Query: 181 tgtcgggcatatgggatcgtattgtaccaaggagattgcagcagtcgttcttcactatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4919 tgtcgggcatatgggatcgtattgtaccaaggagattgcagcagtcgttcttcactatgt 4978
Query: 241 ccttattggagtggctctactcgaatctaaggcaaggtcttatgacagagggtagtgac 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4979 ccttattggagtggctctactcgaatctaaggcaaggtcttatgacagagggtagtgac 5037
>At4g27010.F
Length = 7608
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 111 tctgatgtttgtcaagtt 128
||||||||||||||||||
Sbjct: 5641 tctgatgtttgtcaagtt 5658
>At2g22350.F
Length = 966
Score = 34.2 bits (17), Expect = 0.56
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 20 ggcaccggaacgggtacgggtttttctttggtt 52
|||||||||||| || || |||||||| |||||
Sbjct: 3 ggcaccggaacgagtccgtgtttttctctggtt 35
>At1g30780.F PTA.sd.2153.singlet
Length = 1446
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 228 ttcttcactatgtcct 243
||||||||||||||||
Sbjct: 991 ttcttcactatgtcct 1006
>PTA.sd.7963.C1 nseq=5
Length = 1697
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 39 gtttttctttggttgg 54
||||||||||||||||
Sbjct: 1603 gtttttctttggttgg 1618
>At4g22030.F
Length = 1881
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 106 gtgattctgatgtttg 121
||||||||||||||||
Sbjct: 1562 gtgattctgatgtttg 1577
>At2g37310.F
Length = 1974
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 88 gtaagagaaggcattt 103
||||||||||||||||
Sbjct: 273 gtaagagaaggcattt 258
>PTA.sd.9755.C1 nseq=4
Length = 1072
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 200 tattgtaccaaggag 214
|||||||||||||||
Sbjct: 658 tattgtaccaaggag 672
>PTA.sd.8947.C1 nseq=12
Length = 1990
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 227 gttcttcactatgtc 241
|||||||||||||||
Sbjct: 253 gttcttcactatgtc 267
>PTA.sd.8853.C1 nseq=12
Length = 1257
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 ccaaggagattgcag 221
|||||||||||||||
Sbjct: 211 ccaaggagattgcag 225
>PTA.sd.8638.C1 nseq=13
Length = 2121
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 42 tttctttggttggta 56
|||||||||||||||
Sbjct: 707 tttctttggttggta 721
>PTA.sd.6269.C1 nseq=3
Length = 3324
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 216 ttgcagcagtcgttc 230
|||||||||||||||
Sbjct: 2684 ttgcagcagtcgttc 2698
>PTA.sd.4995.C1 nseq=6
Length = 3333
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 106 gtgattctgatgttt 120
|||||||||||||||
Sbjct: 1119 gtgattctgatgttt 1133
>PTA.sd.484.C1 nseq=6
Length = 982
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 114 gatgtttgtcaagtt 128
|||||||||||||||
Sbjct: 746 gatgtttgtcaagtt 760
>PTA.sd.4179.C1 nseq=9
Length = 2547
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 102 ttgtgtgattctgatgttt 120
|||||||||||| ||||||
Sbjct: 2476 ttgtgtgattctcatgttt 2458
>PTA.sd.2795.C1 nseq=23
Length = 2303
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 42 tttctttggttggta 56
|||||||||||||||
Sbjct: 716 tttctttggttggta 730
>PTA.sd.2484.C1 nseq=8
Length = 2361
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1 ggcgtgtgtggaaag 15
|||||||||||||||
Sbjct: 1841 ggcgtgtgtggaaag 1855
>PTA.sd.18051.C1 nseq=5
Length = 1640
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 123 caagtttgtcgagga 137
|||||||||||||||
Sbjct: 1533 caagtttgtcgagga 1519
>PTA.sd.17562.C1 nseq=7
Length = 3101
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 agagaaggcatttgt 105
|||||||||||||||
Sbjct: 2289 agagaaggcatttgt 2303
>PTA.sd.16306.C1 nseq=8
Length = 2950
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 56 agtgaaccaagcaat 70
|||||||||||||||
Sbjct: 450 agtgaaccaagcaat 464
>PTA.sd.16090.C1 nseq=3
Length = 1884
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 151 tcctacatgttctta 165
|||||||||||||||
Sbjct: 928 tcctacatgttctta 914
>PTA.sd.14939.C1 nseq=13
Length = 1525
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 118 tttgtcaagtttgtc 132
|||||||||||||||
Sbjct: 292 tttgtcaagtttgtc 278
>PTA.sd.1465.C1 nseq=23
Length = 1804
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 aaggagattgcagca 223
|||||||||||||||
Sbjct: 214 aaggagattgcagca 228
>PTA.sd.13519.C1 nseq=16
Length = 5893
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 77 gaactccgagcgtaa 91
|||||||||||||||
Sbjct: 3358 gaactccgagcgtaa 3344
>PTA.sd.13414.C1 nseq=2
Length = 1151
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 gaacgggtacgggtt 41
|||||||||||||||
Sbjct: 609 gaacgggtacgggtt 595
>PTA.sd.10195.C1 nseq=3
Length = 1116
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 56 agtgaaccaagcaat 70
|||||||||||||||
Sbjct: 529 agtgaaccaagcaat 515
>At4g08620.F
Length = 1950
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 36 cgggtttttctttgg 50
|||||||||||||||
Sbjct: 489 cgggtttttctttgg 475
>At3g57700.F
Length = 1023
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 ccaaggagattgcag 221
|||||||||||||||
Sbjct: 473 ccaaggagattgcag 487
>At3g44730.F
Length = 3264
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 ccaaggagattgcag 221
|||||||||||||||
Sbjct: 562 ccaaggagattgcag 548
>At2g16230.F
Length = 1371
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 gaacgggtacgggtt 41
|||||||||||||||
Sbjct: 606 gaacgggtacgggtt 592
>At1g66110.F
Length = 1017
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 285 acagagggtagtgac 299
|||||||||||||||
Sbjct: 147 acagagggtagtgac 133
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 299
length of database: 39,126,732
effective HSP length: 16
effective length of query: 283
effective length of database: 38,700,540
effective search space: 10952252820
effective search space used: 10952252820
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)