BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_13745
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27900.F 589 e-168
PTA.sd.3945.C1 nseq=14 34 0.55
At1g17680.F PTA.sd.1298.singlet 32 2.2
PTA.sd.8404.C1 nseq=10 32 2.2
PTA.sd.5229.C1 nseq=15 32 2.2
PTA.sd.3628.C1 nseq=4 32 2.2
PTA.sd.17405.C1 nseq=7 32 2.2
PTA.sd.17100.C1 nseq=20 32 2.2
PTA.sd.10411.C1 nseq=3 32 2.2
At3g58350.F 32 2.2
At3g25750.F 32 2.2
At1g08260.F 32 2.2
At2g22400.F PTA.sd.5524.singlet 30 8.6
PTA.sd.9923.C1 nseq=25 30 8.6
PTA.sd.9134.C1 nseq=9 30 8.6
>At5g27900.F
Length = 435
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 aaattttctcgatcttcgcaaggttgtcgatctttgaataagttttctcgcttcaataac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 aaattttctcgatcttcgcaaggttgtcgatctttgaataagttttctcgcttcaataac 105
Query: 61 tttcgtactagtgcttgtttctttgatgcttctaaacccaaatcagatgtccaaccattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 tttcgtactagtgcttgtttctttgatgcttctaaacccaaatcagatgtccaaccattc 165
Query: 121 aagaaaattcgttatagttctgaacatggttgtttgaccatgagttttgattccccttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 aagaaaattcgttatagttctgaacatggttgtttgaccatgagttttgattccccttct 225
Query: 181 tcatgtccttcaacctcatttttatgtgatttatcacaaaatctagttcgtggcaatgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tcatgtccttcaacctcatttttatgtgatttatcacaaaatctagttcgtggcaatgct 285
Query: 241 catatcccaaagttttatacaagggatctcatttcaaccattggaagtcgtgaccac 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 catatcccaaagttttatacaagggatctcatttcaaccattggaagtcgtgaccac 342
>PTA.sd.3945.C1 nseq=14
Length = 1790
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 119 tcaagaaaattcgttat 135
|||||||||||||||||
Sbjct: 1505 tcaagaaaattcgttat 1489
>At1g17680.F PTA.sd.1298.singlet
Length = 2649
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 75 ttgtttctttgatgct 90
||||||||||||||||
Sbjct: 1654 ttgtttctttgatgct 1639
>PTA.sd.8404.C1 nseq=10
Length = 5309
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 158 ccatgagttttgattc 173
||||||||||||||||
Sbjct: 3059 ccatgagttttgattc 3074
>PTA.sd.5229.C1 nseq=15
Length = 2257
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 21 aggttgtcgatctttg 36
||||||||||||||||
Sbjct: 403 aggttgtcgatctttg 388
>PTA.sd.3628.C1 nseq=4
Length = 4338
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 178 tcttcatgtccttcaa 193
||||||||||||||||
Sbjct: 229 tcttcatgtccttcaa 244
>PTA.sd.17405.C1 nseq=7
Length = 1297
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 248 caaagttttatacaagggat 267
|||||||||||| |||||||
Sbjct: 1218 caaagttttatagaagggat 1199
>PTA.sd.17100.C1 nseq=20
Length = 1806
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 71 gtgcttgtttctttga 86
||||||||||||||||
Sbjct: 262 gtgcttgtttctttga 277
>PTA.sd.10411.C1 nseq=3
Length = 517
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 220 aatctagttcgtggca 235
||||||||||||||||
Sbjct: 391 aatctagttcgtggca 376
>At3g58350.F
Length = 1068
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 179 cttcatgtccttcaac 194
||||||||||||||||
Sbjct: 975 cttcatgtccttcaac 960
>At3g25750.F
Length = 1047
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 174 cccttcttcatgtcct 189
||||||||||||||||
Sbjct: 231 cccttcttcatgtcct 246
>At1g08260.F
Length = 6816
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 189 ttcaacctcattttta 204
||||||||||||||||
Sbjct: 951 ttcaacctcattttta 936
>At2g22400.F PTA.sd.5524.singlet
Length = 2514
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 50 gcttcaataactttc 64
|||||||||||||||
Sbjct: 1673 gcttcaataactttc 1659
>PTA.sd.9923.C1 nseq=25
Length = 1577
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 162 gagttttgattcccc 176
|||||||||||||||
Sbjct: 890 gagttttgattcccc 876
>PTA.sd.9134.C1 nseq=9
Length = 5368
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 166 tttgattccccttcttcat 184
||||||||||| |||||||
Sbjct: 4479 tttgattccccgtcttcat 4497
>PTA.sd.8807.C1 nseq=13
Length = 624
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 267 tctcatttcaaccat 281
|||||||||||||||
Sbjct: 149 tctcatttcaaccat 135
>PTA.sd.7616.C1 nseq=3
Length = 1142
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 202 ttatgtgatttatca 216
|||||||||||||||
Sbjct: 88 ttatgtgatttatca 74
>PTA.sd.7432.C1 nseq=18
Length = 2061
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 79 ttctttgatgcttct 93
|||||||||||||||
Sbjct: 1992 ttctttgatgcttct 2006
>PTA.sd.5611.C1 nseq=18
Length = 1048
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 267 tctcatttcaaccat 281
|||||||||||||||
Sbjct: 1033 tctcatttcaaccat 1019
>PTA.sd.5198.C1 nseq=7
Length = 2851
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 50 gcttcaataactttc 64
|||||||||||||||
Sbjct: 1361 gcttcaataactttc 1375
>PTA.sd.4932.C1 nseq=7
Length = 1497
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 205 tgtgatttatcacaa 219
|||||||||||||||
Sbjct: 1294 tgtgatttatcacaa 1308
>PTA.sd.4056.C1 nseq=9
Length = 2552
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 76 tgtttctttgatgct 90
|||||||||||||||
Sbjct: 370 tgtttctttgatgct 356
>PTA.sd.3961.C1 nseq=9
Length = 1822
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 95 aacccaaatcagatg 109
|||||||||||||||
Sbjct: 483 aacccaaatcagatg 469
>PTA.sd.3049.C1 nseq=13
Length = 1297
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 202 ttatgtgatttatcacaaa 220
|||||||||||| ||||||
Sbjct: 1195 ttatgtgatttaacacaaa 1213
>PTA.sd.18071.C1 nseq=11
Length = 2134
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 271 atttcaaccattgga 285
|||||||||||||||
Sbjct: 1786 atttcaaccattgga 1800
>PTA.sd.17720.C1 nseq=2
Length = 1543
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 73 gcttgtttctttgat 87
|||||||||||||||
Sbjct: 429 gcttgtttctttgat 443
>PTA.sd.1694.C1 nseq=3
Length = 2844
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 274 tcaaccattggaagt 288
|||||||||||||||
Sbjct: 2011 tcaaccattggaagt 1997
>PTA.sd.16773.C1 nseq=2
Length = 1817
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 244 atcccaaagttttat 258
|||||||||||||||
Sbjct: 1032 atcccaaagttttat 1018
>PTA.sd.16619.C1 nseq=2
Length = 2416
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 94 aaacccaaatcagat 108
|||||||||||||||
Sbjct: 1112 aaacccaaatcagat 1098
>PTA.sd.1439.C1 nseq=7
Length = 4514
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 41 agttttctcgcttca 55
|||||||||||||||
Sbjct: 1648 agttttctcgcttca 1662
>PTA.sd.1404.C1 nseq=9
Length = 1767
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 79 ttctttgatgcttct 93
|||||||||||||||
Sbjct: 784 ttctttgatgcttct 770
>PTA.sd.13526.C1 nseq=18
Length = 2273
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 165 ttttgattccccttc 179
|||||||||||||||
Sbjct: 1962 ttttgattccccttc 1948
>PTA.sd.11445.C1 nseq=20
Length = 3343
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 69 tagtgcttgtttctttgat 87
||||| |||||||||||||
Sbjct: 3198 tagtgtttgtttctttgat 3216
>PTA.sd.10918.C1 nseq=4
Length = 2163
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 87 tgcttctaaacccaa 101
|||||||||||||||
Sbjct: 304 tgcttctaaacccaa 290
>At5g28600.F
Length = 2136
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 110 tccaaccattcaaga 124
|||||||||||||||
Sbjct: 456 tccaaccattcaaga 470
>At5g16170.F
Length = 990
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 179 cttcatgtccttcaa 193
|||||||||||||||
Sbjct: 238 cttcatgtccttcaa 224
>At4g25540.F
Length = 3231
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 177 ttcttcatgtccttc 191
|||||||||||||||
Sbjct: 3072 ttcttcatgtccttc 3058
>At4g18895.F
Length = 1371
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 243 tatcccaaagtttta 257
|||||||||||||||
Sbjct: 1315 tatcccaaagtttta 1301
>At4g03270.F
Length = 909
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 117 attcaagaaaattcg 131
|||||||||||||||
Sbjct: 203 attcaagaaaattcg 217
>At3g20030.F
Length = 1209
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 tcgatctttgaataa 41
|||||||||||||||
Sbjct: 123 tcgatctttgaataa 109
>At3g09660.F
Length = 2334
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 110 tccaaccattcaagaaaat 128
|||||| ||||||||||||
Sbjct: 242 tccaacaattcaagaaaat 260
>At1g52620.F
Length = 2460
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 78 tttctttgatgcttc 92
|||||||||||||||
Sbjct: 1122 tttctttgatgcttc 1108
>At1g49250.F
Length = 1974
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 aaacccaaatcagat 108
|||||||||||||||
Sbjct: 106 aaacccaaatcagat 120
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)