BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_13662
(296 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01340.F 587 e-167
At4g01010.F 46 1e-04
PTA.sd.9759.C1 nseq=22 34 0.55
PTA.sd.7298.C1 nseq=4 34 0.55
PTA.sd.7297.C1 nseq=10 34 0.55
At5g16180.F 34 0.55
At5g62600.F PTA.sd.17664.singlet 32 2.2
PTA.sd.4857.C1 nseq=9 32 2.2
PTA.sd.4439.C2 nseq=13 32 2.2
PTA.sd.3161.C1 nseq=8 32 2.2
PTA.sd.17803.C1 nseq=11 32 2.2
PTA.sd.16760.C1 nseq=6 32 2.2
PTA.sd.11519.C1 nseq=6 32 2.2
At3g48010.F 32 2.2
At2g26380.F 32 2.2
>At1g01340.F
Length = 2121
Score = 587 bits (296), Expect = e-167
Identities = 296/296 (100%)
Strand = Plus / Plus
Query: 1 tcttttatacaagcagcgtggaggagatactgtcggaggaagttagccaagtcactacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 tcttttatacaagcagcgtggaggagatactgtcggaggaagttagccaagtcactacgc 1884
Query: 61 gatgaagaagatcgtctccgagaagcgctcgctagtcaagataaagaacacaatgctgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 gatgaagaagatcgtctccgagaagcgctcgctagtcaagataaagaacacaatgctgca 1944
Query: 121 accgtgtcgtcgtccttgagccttggaggcgctctttacgcgtcgcgtttcgcatcaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 accgtgtcgtcgtccttgagccttggaggcgctctttacgcgtcgcgtttcgcatcaaac 2004
Query: 181 gcgcttcacaatctgaggcacaatatctccaaccttcctcctcgctacactcttcctttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2005 gcgcttcacaatctgaggcacaatatctccaaccttcctcctcgctacactcttcctttg 2064
Query: 241 ctacctcaaaaacccaccgagcctgacttcaccgccaatcatacaactgaccctta 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2065 ctacctcaaaaacccaccgagcctgacttcaccgccaatcatacaactgaccctta 2120
>At4g01010.F
Length = 2070
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 157 tacgcgtcgcgtttcgcatcaaacgcgcttcacaatctg 195
||||||||||| || || ||||||||||||| |||||||
Sbjct: 1963 tacgcgtcgcggtttgcttcaaacgcgcttcgcaatctg 2001
Score = 42.1 bits (21), Expect = 0.002
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 235 cctttgctacctcaaaaacccaccgagcctgacttca 271
||||||||||||| |||||| |||||||||| ||||
Sbjct: 2017 cctttgctacctcctaaaccctccgagcctgatttca 2053
>PTA.sd.9759.C1 nseq=22
Length = 835
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 57 acgcgatgaagaagatc 73
|||||||||||||||||
Sbjct: 410 acgcgatgaagaagatc 394
>PTA.sd.7298.C1 nseq=4
Length = 2002
Score = 34.2 bits (17), Expect = 0.55
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 3 ttttatacaagcagcgtggaggaga 27
||||||||||||||| |||| ||||
Sbjct: 1623 ttttatacaagcagcatggaagaga 1647
>PTA.sd.7297.C1 nseq=10
Length = 2415
Score = 34.2 bits (17), Expect = 0.55
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 3 ttttatacaagcagcgtggaggaga 27
||||||||||||||| |||| ||||
Sbjct: 2027 ttttatacaagcagcatggaagaga 2051
>At5g16180.F
Length = 2157
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 59 gcgatgaagaagatcgt 75
|||||||||||||||||
Sbjct: 394 gcgatgaagaagatcgt 410
>At5g62600.F PTA.sd.17664.singlet
Length = 1719
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 190 aatctgaggcacaata 205
||||||||||||||||
Sbjct: 828 aatctgaggcacaata 813
>PTA.sd.4857.C1 nseq=9
Length = 1875
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 66 agaagatcgtctccga 81
||||||||||||||||
Sbjct: 77 agaagatcgtctccga 92
>PTA.sd.4439.C2 nseq=13
Length = 1649
Score = 32.2 bits (16), Expect = 2.2
Identities = 23/24 (95%), Gaps = 1/24 (4%)
Strand = Plus / Plus
Query: 19 tggaggagatactgtcggaggaag 42
|||||||||| |||||||||||||
Sbjct: 1388 tggaggagat-ctgtcggaggaag 1410
>PTA.sd.3161.C1 nseq=8
Length = 1042
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 56 tacgcgatgaagaaga 71
||||||||||||||||
Sbjct: 646 tacgcgatgaagaaga 661
>PTA.sd.17803.C1 nseq=11
Length = 4146
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 61 gatgaagaagatcgtc 76
||||||||||||||||
Sbjct: 2370 gatgaagaagatcgtc 2385
>PTA.sd.16760.C1 nseq=6
Length = 1802
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 218 ctcctcgctacactct 233
||||||||||||||||
Sbjct: 226 ctcctcgctacactct 211
>PTA.sd.11519.C1 nseq=6
Length = 1467
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 18 gtggaggagatactgt 33
||||||||||||||||
Sbjct: 708 gtggaggagatactgt 723
>At3g48010.F
Length = 2118
Score = 32.2 bits (16), Expect = 2.2
Identities = 25/28 (89%)
Strand = Plus / Plus
Query: 3 ttttatacaagcagcgtggaggagatac 30
|||||||||||| || |||||| |||||
Sbjct: 1794 ttttatacaagctgcttggaggcgatac 1821
>At2g26380.F
Length = 1443
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 118 gcaaccgtgtcgtcgt 133
||||||||||||||||
Sbjct: 215 gcaaccgtgtcgtcgt 230
>At1g54385.F
Length = 1683
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 189 caatctgaggcacaat 204
||||||||||||||||
Sbjct: 247 caatctgaggcacaat 232
>At4g33280.F PTA.sd.13309.singlet
Length = 1386
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 186 tcacaatctgaggca 200
|||||||||||||||
Sbjct: 373 tcacaatctgaggca 359
>PTA.sd.9416.C1 nseq=6
Length = 1299
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 64 gaagaagatcgtctc 78
|||||||||||||||
Sbjct: 330 gaagaagatcgtctc 316
>PTA.sd.9146.C1 nseq=19
Length = 1891
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 atgaagaagatcgtc 76
|||||||||||||||
Sbjct: 1056 atgaagaagatcgtc 1070
>PTA.sd.9029.C1 nseq=6
Length = 1685
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 277 aatcatacaactgaccctt 295
|||||||||||||| ||||
Sbjct: 174 aatcatacaactgagcctt 156
>PTA.sd.854.C1 nseq=50
Length = 2025
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 227 acactcttcctttgc 241
|||||||||||||||
Sbjct: 224 acactcttcctttgc 238
>PTA.sd.8417.C1 nseq=8
Length = 1968
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 110 acaatgctgcaaccg 124
|||||||||||||||
Sbjct: 1592 acaatgctgcaaccg 1606
>PTA.sd.7957.C1 nseq=7
Length = 865
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 187 cacaatctgaggcac 201
|||||||||||||||
Sbjct: 254 cacaatctgaggcac 240
>PTA.sd.7938.C1 nseq=9
Length = 1632
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 182 cgcttcacaatctga 196
|||||||||||||||
Sbjct: 594 cgcttcacaatctga 608
>PTA.sd.7124.C1 nseq=12
Length = 640
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 gatgaagaagatcgt 75
|||||||||||||||
Sbjct: 364 gatgaagaagatcgt 378
>PTA.sd.594.C1 nseq=13
Length = 1265
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 173 catcaaacgcgcttc 187
|||||||||||||||
Sbjct: 119 catcaaacgcgcttc 133
>PTA.sd.4822.C1 nseq=11
Length = 4098
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 19 tggaggagatactgt 33
|||||||||||||||
Sbjct: 33 tggaggagatactgt 19
>PTA.sd.4792.C1 nseq=17
Length = 647
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 gcgatgaagaagatc 73
|||||||||||||||
Sbjct: 254 gcgatgaagaagatc 268
>PTA.sd.475.C1 nseq=2
Length = 829
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 202 aatatctccaacctt 216
|||||||||||||||
Sbjct: 719 aatatctccaacctt 733
>PTA.sd.4232.C1 nseq=6
Length = 1990
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 tcgtcgtccttgagc 141
|||||||||||||||
Sbjct: 25 tcgtcgtccttgagc 39
>PTA.sd.3874.C1 nseq=5
Length = 2466
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 209 ccaaccttcctcctc 223
|||||||||||||||
Sbjct: 2351 ccaaccttcctcctc 2337
>PTA.sd.3753.C1 nseq=2
Length = 832
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 224 gctacactcttcctt 238
|||||||||||||||
Sbjct: 109 gctacactcttcctt 123
>PTA.sd.3149.C1 nseq=4
Length = 740
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 67 gaagatcgtctccgagaag 85
||||||| |||||||||||
Sbjct: 249 gaagatcttctccgagaag 231
>PTA.sd.3023.C1 nseq=28
Length = 2087
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 110 acaatgctgcaaccg 124
|||||||||||||||
Sbjct: 1734 acaatgctgcaaccg 1748
>PTA.sd.2765.C1 nseq=25
Length = 1689
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 277 aatcatacaactgaccctt 295
|||||||||||||| ||||
Sbjct: 170 aatcatacaactgagcctt 152
>PTA.sd.2583.C1 nseq=2
Length = 819
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 169 ttcgcatcaaacgcg 183
|||||||||||||||
Sbjct: 201 ttcgcatcaaacgcg 215
>PTA.sd.2226.C1 nseq=17
Length = 2360
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 190 aatctgaggcacaat 204
|||||||||||||||
Sbjct: 934 aatctgaggcacaat 948
>PTA.sd.2224.C1 nseq=3
Length = 3874
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 215 ttcctcctcgctaca 229
|||||||||||||||
Sbjct: 506 ttcctcctcgctaca 492
>PTA.sd.1852.C1 nseq=8
Length = 2776
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 18 gtggaggagatactg 32
|||||||||||||||
Sbjct: 701 gtggaggagatactg 687
>PTA.sd.17674.C1 nseq=7
Length = 2225
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 63 tgaagaagatcgtct 77
|||||||||||||||
Sbjct: 1328 tgaagaagatcgtct 1314
>PTA.sd.17465.C1 nseq=24
Length = 2295
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 71 atcgtctccgagaag 85
|||||||||||||||
Sbjct: 1592 atcgtctccgagaag 1578
>PTA.sd.17101.C1 nseq=5
Length = 1417
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 56 tacgcgatgaagaagatcg 74
|||||||||||| ||||||
Sbjct: 1101 tacgcgatgaaggagatcg 1119
>PTA.sd.14657.C1 nseq=38
Length = 589
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 187 cacaatctgaggcac 201
|||||||||||||||
Sbjct: 148 cacaatctgaggcac 162
>PTA.sd.13866.C1 nseq=10
Length = 1499
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 19 tggaggagatactgt 33
|||||||||||||||
Sbjct: 312 tggaggagatactgt 326
>PTA.sd.11080.C1 nseq=6
Length = 1276
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 262 cctgacttcaccgcc 276
|||||||||||||||
Sbjct: 313 cctgacttcaccgcc 299
>PTA.sd.11079.C1 nseq=9
Length = 1395
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 262 cctgacttcaccgcc 276
|||||||||||||||
Sbjct: 420 cctgacttcaccgcc 406
>PTA.sd.10741.C1 nseq=4
Length = 2862
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 99 agataaagaacacaatgct 117
|||| ||||||||||||||
Sbjct: 1947 agatgaagaacacaatgct 1965
>PTA.sd.10685.C1 nseq=9
Length = 1598
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 gcgatgaagaagatc 73
|||||||||||||||
Sbjct: 373 gcgatgaagaagatc 387
>PTA.sd.10458.C1 nseq=10
Length = 1540
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 61 gatgaagaagatcgt 75
|||||||||||||||
Sbjct: 111 gatgaagaagatcgt 97
>At5g61480.F
Length = 3126
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 63 tgaagaagatcgtct 77
|||||||||||||||
Sbjct: 2432 tgaagaagatcgtct 2418
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 296
length of database: 39,126,732
effective HSP length: 16
effective length of query: 280
effective length of database: 38,700,540
effective search space: 10836151200
effective search space used: 10836151200
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)