BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_12348
(296 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g34990.F 587 e-167
PTA.sd.7792.C1 nseq=11 36 0.14
PTA.sd.9134.C1 nseq=9 34 0.55
PTA.sd.7566.C1 nseq=14 34 0.55
PTA.sd.6387.C1 nseq=4 34 0.55
PTA.sd.18055.C1 nseq=3 34 0.55
PTA.sd.7967.C1 nseq=2 32 2.2
PTA.sd.6567.C1 nseq=4 32 2.2
PTA.sd.2233.C1 nseq=37 32 2.2
PTA.sd.17756.C1 nseq=11 32 2.2
PTA.sd.119.C1 nseq=9 32 2.2
PTA.sd.11597.C1 nseq=2 32 2.2
At5g04290.F 32 2.2
At2g41720.F PTA.sd.6927.singlet 30 8.6
At1g72070.F PTA.sd.4015.singlet 30 8.6
>At2g34990.F
Length = 909
Score = 587 bits (296), Expect = e-167
Identities = 296/296 (100%)
Strand = Plus / Plus
Query: 1 tgtggttcaaccgctagataatttagaccggtttacgcttcggttaccagaagaagtccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tgtggttcaaccgctagataatttagaccggtttacgcttcggttaccagaagaagtccg 671
Query: 61 gaggcaactgacgaaaaaaacggtggacaacgtggcattttctcaggctaggagctcacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gaggcaactgacgaaaaaaacggtggacaacgtggcattttctcaggctaggagctcacg 731
Query: 121 gcgtggttacagaagcagaagtgccggaagcgagaggagtgtcttctcgtaccaacggcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gcgtggttacagaagcagaagtgccggaagcgagaggagtgtcttctcgtaccaacggcg 791
Query: 181 gatgcattccttctctgattgtgcatggtccacctcctgtggcggagaagcggtggctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gatgcattccttctctgattgtgcatggtccacctcctgtggcggagaagcggtggctcc 851
Query: 241 gtcaaaggattcccgccgaatatcagttgaacaatcccagctagatgatcgagtgt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 gtcaaaggattcccgccgaatatcagttgaacaatcccagctagatgatcgagtgt 907
>PTA.sd.7792.C1 nseq=11
Length = 1711
Score = 36.2 bits (18), Expect = 0.14
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 29 cggtttacgcttcggttaccagaaga 54
|||||||| ||||||||||| |||||
Sbjct: 1155 cggtttactcttcggttaccggaaga 1180
>PTA.sd.9134.C1 nseq=9
Length = 5368
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 92 gtggcattttctcaggc 108
|||||||||||||||||
Sbjct: 391 gtggcattttctcaggc 375
>PTA.sd.7566.C1 nseq=14
Length = 2302
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 221 ggcggagaagcggtggc 237
|||||||||||||||||
Sbjct: 1870 ggcggagaagcggtggc 1886
>PTA.sd.6387.C1 nseq=4
Length = 1318
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 93 tggcattttctcaggct 109
|||||||||||||||||
Sbjct: 522 tggcattttctcaggct 506
>PTA.sd.18055.C1 nseq=3
Length = 1211
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 97 attttctcaggctagga 113
|||||||||||||||||
Sbjct: 578 attttctcaggctagga 594
>PTA.sd.7967.C1 nseq=2
Length = 1653
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 90 acgtggcattttctca 105
||||||||||||||||
Sbjct: 540 acgtggcattttctca 525
>PTA.sd.6567.C1 nseq=4
Length = 2496
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 267 ttgaacaatcccagct 282
||||||||||||||||
Sbjct: 678 ttgaacaatcccagct 663
>PTA.sd.2233.C1 nseq=37
Length = 2561
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 184 gcattccttctctgattgtg 203
||||| ||||||||||||||
Sbjct: 271 gcatttcttctctgattgtg 290
>PTA.sd.17756.C1 nseq=11
Length = 2762
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 99 tttctcaggctaggag 114
||||||||||||||||
Sbjct: 2083 tttctcaggctaggag 2098
>PTA.sd.119.C1 nseq=9
Length = 1047
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 221 ggcggagaagcggtgg 236
||||||||||||||||
Sbjct: 413 ggcggagaagcggtgg 398
>PTA.sd.11597.C1 nseq=2
Length = 3129
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 115 ctcacggcgtggttac 130
||||||||||||||||
Sbjct: 354 ctcacggcgtggttac 369
>At5g04290.F
Length = 4482
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 277 ccagctagatgatcga 292
||||||||||||||||
Sbjct: 4098 ccagctagatgatcga 4083
>At2g41720.F PTA.sd.6927.singlet
Length = 2433
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 126 gttacagaagcagaa 140
|||||||||||||||
Sbjct: 1705 gttacagaagcagaa 1719
>At1g72070.F PTA.sd.4015.singlet
Length = 294
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 146 ggaagcgagaggagt 160
|||||||||||||||
Sbjct: 153 ggaagcgagaggagt 139
>PTA.sd.8764.C1 nseq=2
Length = 529
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 148 aagcgagaggagtgt 162
|||||||||||||||
Sbjct: 408 aagcgagaggagtgt 394
>PTA.sd.8661.C1 nseq=78
Length = 2399
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 229 agcggtggctccgtc 243
|||||||||||||||
Sbjct: 174 agcggtggctccgtc 160
>PTA.sd.5245.C1 nseq=3
Length = 2277
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 250 ttcccgccgaatatc 264
|||||||||||||||
Sbjct: 1217 ttcccgccgaatatc 1203
>PTA.sd.4891.C1 nseq=9
Length = 1206
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 42 ggttaccagaagaag 56
|||||||||||||||
Sbjct: 385 ggttaccagaagaag 371
>PTA.sd.2370.C1 nseq=6
Length = 1770
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 238 tccgtcaaaggattc 252
|||||||||||||||
Sbjct: 302 tccgtcaaaggattc 316
>PTA.sd.2166.C1 nseq=17
Length = 1609
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 206 tggtccacctcctgt 220
|||||||||||||||
Sbjct: 1048 tggtccacctcctgt 1062
>PTA.sd.17330.C1 nseq=46
Length = 793
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 165 tctcgtaccaacggc 179
|||||||||||||||
Sbjct: 127 tctcgtaccaacggc 113
>PTA.sd.15746.C1 nseq=6
Length = 1343
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 26 gaccggtttacgctt 40
|||||||||||||||
Sbjct: 710 gaccggtttacgctt 724
>PTA.sd.14802.C1 nseq=4
Length = 840
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 123 gtggttacagaagca 137
|||||||||||||||
Sbjct: 657 gtggttacagaagca 671
>PTA.sd.13539.C1 nseq=7
Length = 2295
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 126 gttacagaagcagaa 140
|||||||||||||||
Sbjct: 1371 gttacagaagcagaa 1385
>PTA.sd.13387.C1 nseq=2
Length = 1489
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 gcattttctcaggct 109
|||||||||||||||
Sbjct: 286 gcattttctcaggct 300
>PTA.sd.11271.C1 nseq=2
Length = 10469
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 186 attccttctctgatt 200
|||||||||||||||
Sbjct: 8005 attccttctctgatt 7991
>PTA.sd.10897.C1 nseq=2
Length = 1302
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 tccacctcctgtggc 223
|||||||||||||||
Sbjct: 721 tccacctcctgtggc 735
>At3g56470.F
Length = 1104
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 42 ggttaccagaagaag 56
|||||||||||||||
Sbjct: 3 ggttaccagaagaag 17
>At3g28020.F
Length = 693
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 237 ctccgtcaaaggatt 251
|||||||||||||||
Sbjct: 84 ctccgtcaaaggatt 70
>At1g60090.F
Length = 1587
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 133 aagcagaagtgccgg 147
|||||||||||||||
Sbjct: 124 aagcagaagtgccgg 110
>At1g41690.F
Length = 1116
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 281 ctagatgatcgagtg 295
|||||||||||||||
Sbjct: 199 ctagatgatcgagtg 185
>At1g13920.F
Length = 1038
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 124 tggttacagaagcag 138
|||||||||||||||
Sbjct: 145 tggttacagaagcag 159
>At1g02965.F
Length = 489
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 44 ttaccagaagaagtc 58
|||||||||||||||
Sbjct: 433 ttaccagaagaagtc 447
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 296
length of database: 39,126,732
effective HSP length: 16
effective length of query: 280
effective length of database: 38,700,540
effective search space: 10836151200
effective search space used: 10836151200
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)