BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_12300
(294 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g01030.F 583 e-166
PTA.sd.8672.C1 nseq=2 34 0.55
PTA.sd.8587.C1 nseq=7 34 0.55
PTA.sd.7924.C1 nseq=6 34 0.55
PTA.sd.13683.C1 nseq=4 34 0.55
PTA.sd.13090.C1 nseq=4 34 0.55
At4g13080.F 34 0.55
At1g61630.F 34 0.55
At5g58480.F PTA.sd.17366.singlet 32 2.2
PTA.sd.7114.C1 nseq=7 32 2.2
PTA.sd.7095.C1 nseq=3 32 2.2
PTA.sd.4180.C1 nseq=21 32 2.2
PTA.sd.4146.C1 nseq=5 32 2.2
PTA.sd.4019.C1 nseq=9 32 2.2
PTA.sd.296.C1 nseq=11 32 2.2
>At3g01030.F
Length = 1062
Score = 583 bits (294), Expect = e-166
Identities = 294/294 (100%)
Strand = Plus / Plus
Query: 1 agaatctatgaatcattacgaagagctctcttgcaactacggattgagggaaaacccgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 agaatctatgaatcattacgaagagctctcttgcaactacggattgagggaaaacccgaa 164
Query: 61 gaaaacccagaaatctttactcgatcatcgattctgtacgaggaggaggagaaataaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 gaaaacccagaaatctttactcgatcatcgattctgtacgaggaggaggagaaataaaaa 224
Query: 121 gatcctgattcgatgcaaagaatgcgggaaagggtttctttacgagaaatgtctgtttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gatcctgattcgatgcaaagaatgcgggaaagggtttctttacgagaaatgtctgtttaa 284
Query: 181 tcatctccaagtgacgcattctgaagaatctacaagaagaagcctgttttgtaggtttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tcatctccaagtgacgcattctgaagaatctacaagaagaagcctgttttgtaggtttag 344
Query: 241 tattgtgcagaggagaaaaagatcgaagagagtttccaggtacaagaagattct 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tattgtgcagaggagaaaaagatcgaagagagtttccaggtacaagaagattct 398
>PTA.sd.8672.C1 nseq=2
Length = 1966
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 59 aagaaaacccagaaatc 75
|||||||||||||||||
Sbjct: 542 aagaaaacccagaaatc 526
>PTA.sd.8587.C1 nseq=7
Length = 1719
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 205 agaatctacaagaagaa 221
|||||||||||||||||
Sbjct: 705 agaatctacaagaagaa 721
>PTA.sd.7924.C1 nseq=6
Length = 971
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 20 gaagagctctcttgcaa 36
|||||||||||||||||
Sbjct: 487 gaagagctctcttgcaa 503
>PTA.sd.13683.C1 nseq=4
Length = 2022
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 247 gcagaggagaaaaagat 263
|||||||||||||||||
Sbjct: 779 gcagaggagaaaaagat 763
>PTA.sd.13090.C1 nseq=4
Length = 1110
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 174 tgtttaatcatctccaa 190
|||||||||||||||||
Sbjct: 307 tgtttaatcatctccaa 291
>At4g13080.F
Length = 888
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 2 gaatctatgaatcattacgaa 22
||||||| |||||||||||||
Sbjct: 220 gaatctaagaatcattacgaa 240
>At1g61630.F
Length = 1254
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 152 gggtttctttacgagaa 168
|||||||||||||||||
Sbjct: 841 gggtttctttacgagaa 857
>At5g58480.F PTA.sd.17366.singlet
Length = 1398
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 99 cgaggaggaggagaaa 114
||||||||||||||||
Sbjct: 31 cgaggaggaggagaaa 16
>PTA.sd.7114.C1 nseq=7
Length = 1751
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 103 gaggaggagaaataaaaaga 122
|||||||||||| |||||||
Sbjct: 64 gaggaggagaaacaaaaaga 83
>PTA.sd.7095.C1 nseq=3
Length = 1393
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 100 gaggaggaggagaaat 115
||||||||||||||||
Sbjct: 308 gaggaggaggagaaat 293
>PTA.sd.4180.C1 nseq=21
Length = 2652
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 196 gcattctgaagaatct 211
||||||||||||||||
Sbjct: 1863 gcattctgaagaatct 1848
>PTA.sd.4146.C1 nseq=5
Length = 1614
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 213 caagaagaagcctgtt 228
||||||||||||||||
Sbjct: 1389 caagaagaagcctgtt 1374
>PTA.sd.4019.C1 nseq=9
Length = 916
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 69 agaaatctttactcga 84
||||||||||||||||
Sbjct: 699 agaaatctttactcga 714
>PTA.sd.296.C1 nseq=11
Length = 2142
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 199 ttctgaagaatctaca 214
||||||||||||||||
Sbjct: 1461 ttctgaagaatctaca 1446
>PTA.sd.16221.C1 nseq=2
Length = 4273
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 154 gtttctttacgagaaa 169
||||||||||||||||
Sbjct: 2270 gtttctttacgagaaa 2255
>PTA.sd.15250.C1 nseq=2
Length = 338
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 100 gaggaggaggagaaat 115
||||||||||||||||
Sbjct: 201 gaggaggaggagaaat 186
>PTA.sd.14393.C1 nseq=8
Length = 3043
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 104 aggaggagaaataaaa 119
||||||||||||||||
Sbjct: 1757 aggaggagaaataaaa 1742
>PTA.sd.13247.C1 nseq=16
Length = 1994
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 58 gaagaaaacccagaaa 73
||||||||||||||||
Sbjct: 141 gaagaaaacccagaaa 126
>PTA.sd.1260.C1 nseq=7
Length = 3078
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 84 atcatcgattctgtac 99
||||||||||||||||
Sbjct: 2243 atcatcgattctgtac 2228
>PTA.sd.11586.C1 nseq=5
Length = 3627
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 252 ggagaaaaagatcgaa 267
||||||||||||||||
Sbjct: 3299 ggagaaaaagatcgaa 3314
>At5g51520.F
Length = 615
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 202 tgaagaatctacaaga 217
||||||||||||||||
Sbjct: 401 tgaagaatctacaaga 416
>At4g05140.F
Length = 1260
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 92 ttctgtacgaggagga 107
||||||||||||||||
Sbjct: 390 ttctgtacgaggagga 405
>At4g01820.F
Length = 3690
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 243 ttgtgcagaggagaaa 258
||||||||||||||||
Sbjct: 2577 ttgtgcagaggagaaa 2592
>PTA.sd.9303.C1 nseq=15
Length = 1182
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 256 aaaaagatcgaagag 270
|||||||||||||||
Sbjct: 75 aaaaagatcgaagag 61
>PTA.sd.9232.C1 nseq=30
Length = 2083
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 110 agaaataaaaagatc 124
|||||||||||||||
Sbjct: 1940 agaaataaaaagatc 1926
>PTA.sd.9196.C1 nseq=6
Length = 1751
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 58 gaagaaaacccagaa 72
|||||||||||||||
Sbjct: 290 gaagaaaacccagaa 276
>PTA.sd.9043.C1 nseq=2
Length = 750
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 211 tacaagaagaagcct 225
|||||||||||||||
Sbjct: 199 tacaagaagaagcct 213
>PTA.sd.876.C1 nseq=8
Length = 1535
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 23 gagctctcttgcaactacg 41
||||||||||||| |||||
Sbjct: 104 gagctctcttgcagctacg 86
>PTA.sd.6923.C1 nseq=18
Length = 1797
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 100 gaggaggaggagaaa 114
|||||||||||||||
Sbjct: 107 gaggaggaggagaaa 93
>PTA.sd.6758.C1 nseq=9
Length = 5048
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 9 tgaatcattacgaag 23
|||||||||||||||
Sbjct: 1248 tgaatcattacgaag 1262
>PTA.sd.5592.C1 nseq=5
Length = 1129
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 100 gaggaggaggagaaa 114
|||||||||||||||
Sbjct: 704 gaggaggaggagaaa 718
>PTA.sd.4725.C1 nseq=68
Length = 1471
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 99 cgaggaggaggagaa 113
|||||||||||||||
Sbjct: 200 cgaggaggaggagaa 186
>PTA.sd.396.C1 nseq=3
Length = 931
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 99 cgaggaggaggagaa 113
|||||||||||||||
Sbjct: 267 cgaggaggaggagaa 281
>PTA.sd.3893.C1 nseq=2
Length = 2417
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 62 aaaacccagaaatct 76
|||||||||||||||
Sbjct: 229 aaaacccagaaatct 215
>PTA.sd.3096.C1 nseq=7
Length = 1366
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 248 cagaggagaaaaaga 262
|||||||||||||||
Sbjct: 632 cagaggagaaaaaga 646
>PTA.sd.2876.C1 nseq=4
Length = 1867
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 204 aagaatctacaagaagaag 222
||||| |||||||||||||
Sbjct: 1100 aagaagctacaagaagaag 1118
>PTA.sd.2686.C1 nseq=4
Length = 1857
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 172 tctgtttaatcatct 186
|||||||||||||||
Sbjct: 215 tctgtttaatcatct 201
>PTA.sd.2543.C1 nseq=7
Length = 1385
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 132 gatgcaaagaatgcg 146
|||||||||||||||
Sbjct: 275 gatgcaaagaatgcg 261
>PTA.sd.2445.C1 nseq=21
Length = 1749
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 100 gaggaggaggagaaa 114
|||||||||||||||
Sbjct: 238 gaggaggaggagaaa 252
>PTA.sd.2442.C1 nseq=23
Length = 1333
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 279 ggtacaagaagattc 293
|||||||||||||||
Sbjct: 959 ggtacaagaagattc 945
>PTA.sd.2428.C1 nseq=11
Length = 2869
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 100 gaggaggaggagaaa 114
|||||||||||||||
Sbjct: 2394 gaggaggaggagaaa 2408
>PTA.sd.2233.C1 nseq=37
Length = 2561
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 232 taggtttagtattgt 246
|||||||||||||||
Sbjct: 443 taggtttagtattgt 457
>PTA.sd.2226.C1 nseq=17
Length = 2360
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 241 tattgtgcagaggag 255
|||||||||||||||
Sbjct: 913 tattgtgcagaggag 927
>PTA.sd.200.C1 nseq=10
Length = 1510
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 100 gaggaggaggagaaa 114
|||||||||||||||
Sbjct: 203 gaggaggaggagaaa 189
>PTA.sd.1947.C1 nseq=4
Length = 925
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 24 agctctcttgcaact 38
|||||||||||||||
Sbjct: 77 agctctcttgcaact 63
>PTA.sd.1856.C1 nseq=3
Length = 792
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 100 gaggaggaggagaaa 114
|||||||||||||||
Sbjct: 369 gaggaggaggagaaa 355
>PTA.sd.17603.C1 nseq=44
Length = 3553
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 242 attgtgcagaggaga 256
|||||||||||||||
Sbjct: 40 attgtgcagaggaga 26
>PTA.sd.17070.C1 nseq=33
Length = 1188
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 112 aaataaaaagatcct 126
|||||||||||||||
Sbjct: 1149 aaataaaaagatcct 1163
>PTA.sd.1675.C1 nseq=6
Length = 2149
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 100 gaggaggaggagaaa 114
|||||||||||||||
Sbjct: 662 gaggaggaggagaaa 676
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 294
length of database: 39,126,732
effective HSP length: 16
effective length of query: 278
effective length of database: 38,700,540
effective search space: 10758750120
effective search space used: 10758750120
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)