BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_11849
(298 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40820.F 591 e-168
PTA.sd.9898.C1 nseq=3 42 0.002
PTA.sd.2008.C1 nseq=4 36 0.14
PTA.sd.9770.C1 nseq=5 34 0.56
PTA.sd.4076.C1 nseq=3 34 0.56
PTA.sd.2674.C1 nseq=3 34 0.56
At4g02300.F 34 0.56
At3g59330.F PTA.sd.10732.singlet 32 2.2
At1g54510.F PTA.sd.2960.singlet 32 2.2
PTA.sd.8697.C1 nseq=17 32 2.2
PTA.sd.8644.C1 nseq=8 32 2.2
PTA.sd.6410.C1 nseq=6 32 2.2
PTA.sd.6016.C1 nseq=13 32 2.2
PTA.sd.3329.C1 nseq=13 32 2.2
PTA.sd.17415.C1 nseq=14 32 2.2
>At5g40820.F
Length = 8433
Score = 591 bits (298), Expect = e-168
Identities = 298/298 (100%)
Strand = Plus / Plus
Query: 1 taaaaaggagtatgagatgctgaagaccaaaatcctccctatgttccctccggttttcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7467 taaaaaggagtatgagatgctgaagaccaaaatcctccctatgttccctccggttttcca 7526
Query: 61 taaatggttcttgacaacgttttctgaaccagctgcttggtttaggtcacgtgtagctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7527 taaatggttcttgacaacgttttctgaaccagctgcttggtttaggtcacgtgtagctta 7586
Query: 121 tgctcacaccacagcagtttggtccatggttgggcacattgttgggcttggtgaccgtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7587 tgctcacaccacagcagtttggtccatggttgggcacattgttgggcttggtgaccgtca 7646
Query: 181 tggagaaaatattctctttgattctacttcgggtgattgtgttcatgtagacttcagttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7647 tggagaaaatattctctttgattctacttcgggtgattgtgttcatgtagacttcagttg 7706
Query: 241 cttatttgacaaaggcttacaactggagaagcctgagttggtgccattcagattgacc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7707 cttatttgacaaaggcttacaactggagaagcctgagttggtgccattcagattgacc 7764
>PTA.sd.9898.C1 nseq=3
Length = 11703
Score = 42.1 bits (21), Expect = 0.002
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 146 atggttgggcacattgttgggcttggtgaccgtcatg 182
||||||||| |||| ||||| ||||||||||| ||||
Sbjct: 11014 atggttgggtacatcgttggtcttggtgaccgacatg 11050
>PTA.sd.2008.C1 nseq=4
Length = 2696
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 267 agaagcctgagttggtgc 284
||||||||||||||||||
Sbjct: 39 agaagcctgagttggtgc 22
>PTA.sd.9770.C1 nseq=5
Length = 1051
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3 aaaaggagtatgagatg 19
|||||||||||||||||
Sbjct: 352 aaaaggagtatgagatg 368
>PTA.sd.4076.C1 nseq=3
Length = 3381
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 257 ttacaactggagaagcctgag 277
||||| |||||||||||||||
Sbjct: 2914 ttacatctggagaagcctgag 2894
>PTA.sd.2674.C1 nseq=3
Length = 2395
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 103 taggtcacgtgtagctt 119
|||||||||||||||||
Sbjct: 303 taggtcacgtgtagctt 287
>At4g02300.F
Length = 1599
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 179 catggagaaaatattct 195
|||||||||||||||||
Sbjct: 1316 catggagaaaatattct 1332
>At3g59330.F PTA.sd.10732.singlet
Length = 726
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 278 ttggtgccattcagat 293
||||||||||||||||
Sbjct: 647 ttggtgccattcagat 662
>At1g54510.F PTA.sd.2960.singlet
Length = 1839
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 80 ttttctgaaccagctg 95
||||||||||||||||
Sbjct: 877 ttttctgaaccagctg 892
>PTA.sd.8697.C1 nseq=17
Length = 1976
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 184 agaaaatattctcttt 199
||||||||||||||||
Sbjct: 1894 agaaaatattctcttt 1909
>PTA.sd.8644.C1 nseq=8
Length = 870
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 245 tttgacaaaggcttac 260
||||||||||||||||
Sbjct: 451 tttgacaaaggcttac 436
>PTA.sd.6410.C1 nseq=6
Length = 2799
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 34 cctccctatgttccct 49
||||||||||||||||
Sbjct: 2352 cctccctatgttccct 2337
>PTA.sd.6016.C1 nseq=13
Length = 1667
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 64 atggttcttgacaacg 79
||||||||||||||||
Sbjct: 704 atggttcttgacaacg 719
>PTA.sd.3329.C1 nseq=13
Length = 2818
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 63 aatggttcttgacaac 78
||||||||||||||||
Sbjct: 2440 aatggttcttgacaac 2425
>PTA.sd.17415.C1 nseq=14
Length = 785
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 191 attctctttgattctacttc 210
||||||||||||||| ||||
Sbjct: 60 attctctttgattcttcttc 41
>PTA.sd.17143.C1 nseq=8
Length = 1741
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 88 accagctgcttggttt 103
||||||||||||||||
Sbjct: 621 accagctgcttggttt 636
>PTA.sd.15892.C1 nseq=2
Length = 1603
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 185 gaaaatattctctttg 200
||||||||||||||||
Sbjct: 885 gaaaatattctctttg 870
>PTA.sd.13876.C1 nseq=13
Length = 1345
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 128 accacagcagtttggt 143
||||||||||||||||
Sbjct: 916 accacagcagtttggt 931
>PTA.sd.13195.C1 nseq=5
Length = 1296
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 19 gctgaagaccaaaatcctcc 38
|||||||| |||||||||||
Sbjct: 966 gctgaagatcaaaatcctcc 985
>At5g12920.F
Length = 1329
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 181 tggagaaaatattctc 196
||||||||||||||||
Sbjct: 507 tggagaaaatattctc 492
>At3g63440.F PTA.sd.11049.singlet
Length = 1515
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 139 ttggtccatggttgg 153
|||||||||||||||
Sbjct: 720 ttggtccatggttgg 706
>At1g08350.F PTA.sd.567.singlet
Length = 1770
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 275 gagttggtgccattc 289
|||||||||||||||
Sbjct: 1407 gagttggtgccattc 1393
>PTA.sd.9813.C1 nseq=5
Length = 1934
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 agctgcttggtttag 105
|||||||||||||||
Sbjct: 1162 agctgcttggtttag 1176
>PTA.sd.8443.C1 nseq=2
Length = 990
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 ttctctttgattcta 206
|||||||||||||||
Sbjct: 527 ttctctttgattcta 541
>PTA.sd.8119.C1 nseq=20
Length = 1229
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 6 aggagtatgagatgc 20
|||||||||||||||
Sbjct: 627 aggagtatgagatgc 641
>PTA.sd.7973.C1 nseq=6
Length = 3267
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 150 ttgggcacattgttg 164
|||||||||||||||
Sbjct: 1792 ttgggcacattgttg 1806
>PTA.sd.777.C1 nseq=4
Length = 1148
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 38 cctatgttccctccg 52
|||||||||||||||
Sbjct: 331 cctatgttccctccg 345
>PTA.sd.6691.C1 nseq=5
Length = 1479
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 177 gtcatggagaaaata 191
|||||||||||||||
Sbjct: 990 gtcatggagaaaata 1004
>PTA.sd.6148.C1 nseq=19
Length = 3111
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 240 gcttatttgacaaag 254
|||||||||||||||
Sbjct: 2343 gcttatttgacaaag 2357
>PTA.sd.5676.C1 nseq=5
Length = 2503
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 265 ggagaagcctgagtt 279
|||||||||||||||
Sbjct: 1204 ggagaagcctgagtt 1218
>PTA.sd.5014.C1 nseq=4
Length = 1016
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 17 atgctgaagaccaaaatcc 35
||||||| |||||||||||
Sbjct: 892 atgctgatgaccaaaatcc 874
>PTA.sd.3592.C1 nseq=29
Length = 1628
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 aaatggttcttgaca 76
|||||||||||||||
Sbjct: 292 aaatggttcttgaca 306
>PTA.sd.3567.C1 nseq=8
Length = 1592
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 274 tgagttggtgccatt 288
|||||||||||||||
Sbjct: 82 tgagttggtgccatt 68
>PTA.sd.3215.C1 nseq=7
Length = 1401
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 62 aaatggttcttgaca 76
|||||||||||||||
Sbjct: 1137 aaatggttcttgaca 1123
>PTA.sd.308.C1 nseq=17
Length = 3325
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 189 atattctctttgatt 203
|||||||||||||||
Sbjct: 715 atattctctttgatt 701
>PTA.sd.240.C1 nseq=21
Length = 3224
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 12 atgagatgctgaaga 26
|||||||||||||||
Sbjct: 1728 atgagatgctgaaga 1714
>PTA.sd.2381.C1 nseq=5
Length = 767
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 261 aactggagaagcctg 275
|||||||||||||||
Sbjct: 505 aactggagaagcctg 491
>PTA.sd.17646.C1 nseq=5
Length = 797
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 26 accaaaatcctccct 40
|||||||||||||||
Sbjct: 602 accaaaatcctccct 588
>PTA.sd.16587.C1 nseq=11
Length = 1859
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 58 ccataaatggttctt 72
|||||||||||||||
Sbjct: 1203 ccataaatggttctt 1189
>PTA.sd.16381.C1 nseq=2
Length = 1047
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 217 ttgtgttcatgtaga 231
|||||||||||||||
Sbjct: 549 ttgtgttcatgtaga 563
>PTA.sd.15967.C1 nseq=5
Length = 1022
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 158 attgttgggcttggt 172
|||||||||||||||
Sbjct: 265 attgttgggcttggt 279
>PTA.sd.15825.C1 nseq=10
Length = 1141
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 agctgcttggtttag 105
|||||||||||||||
Sbjct: 764 agctgcttggtttag 778
>PTA.sd.1513.C1 nseq=4
Length = 1618
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 7 ggagtatgagatgct 21
|||||||||||||||
Sbjct: 1239 ggagtatgagatgct 1253
>PTA.sd.15101.C1 nseq=5
Length = 1232
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 63 aatggttcttgacaacgtt 81
|||||||||||||| ||||
Sbjct: 556 aatggttcttgacagcgtt 538
>PTA.sd.1357.C1 nseq=6
Length = 1497
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 cttgacaacgttttc 84
|||||||||||||||
Sbjct: 332 cttgacaacgttttc 318
>PTA.sd.13519.C1 nseq=16
Length = 5893
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 12 atgagatgctgaaga 26
|||||||||||||||
Sbjct: 4406 atgagatgctgaaga 4420
>PTA.sd.13279.C1 nseq=6
Length = 4733
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 100 gtttaggtcacgtgt 114
|||||||||||||||
Sbjct: 317 gtttaggtcacgtgt 303
>PTA.sd.13013.C1 nseq=12
Length = 1586
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 249 acaaaggcttacaac 263
|||||||||||||||
Sbjct: 423 acaaaggcttacaac 437
>PTA.sd.12559.C1 nseq=11
Length = 1489
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 178 tcatggagaaaatat 192
|||||||||||||||
Sbjct: 1017 tcatggagaaaatat 1031
>PTA.sd.11984.C1 nseq=13
Length = 3461
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 183 gagaaaatattctct 197
|||||||||||||||
Sbjct: 2825 gagaaaatattctct 2811
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 298
length of database: 39,126,732
effective HSP length: 16
effective length of query: 282
effective length of database: 38,700,540
effective search space: 10913552280
effective search space used: 10913552280
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)