BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_11108
(299 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g28770.F 593 e-169
PTA.sd.2784.C1 nseq=9 34 0.56
PTA.sd.16190.C1 nseq=41 34 0.56
PTA.sd.15901.C1 nseq=8 34 0.56
PTA.sd.15807.C1 nseq=41 34 0.56
PTA.sd.13675.C1 nseq=9 34 0.56
PTA.sd.1049.C1 nseq=4 34 0.56
At3g22690.F 34 0.56
PTA.sd.5734.C1 nseq=3 32 2.2
PTA.sd.5201.C1 nseq=6 32 2.2
PTA.sd.5139.C1 nseq=3 32 2.2
PTA.sd.3247.C1 nseq=3 32 2.2
PTA.sd.2786.C1 nseq=17 32 2.2
PTA.sd.2411.C1 nseq=15 32 2.2
PTA.sd.17408.C1 nseq=5 32 2.2
>At3g28770.F
Length = 6246
Score = 593 bits (299), Expect = e-169
Identities = 299/299 (100%)
Strand = Plus / Plus
Query: 1 aatagtttgacaaacagtacatcaagtgagcccaatggagataaactagataccaataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5380 aatagtttgacaaacagtacatcaagtgagcccaatggagataaactagataccaataaa 5439
Query: 61 gattctatgaaaaataacacaatggaagctcaaggaggtagtaatggagattcaacaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5440 gattctatgaaaaataacacaatggaagctcaaggaggtagtaatggagattcaacaaat 5499
Query: 121 ggggaaacagaggagactaaagagagcaatgtttctatgaacaaccaaaatatgcaagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5500 ggggaaacagaggagactaaagagagcaatgtttctatgaacaaccaaaatatgcaagat 5559
Query: 181 gtaggaagcaatgaaaattctatgaataatcaaacaacaggaacaggagatgacatcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5560 gtaggaagcaatgaaaattctatgaataatcaaacaacaggaacaggagatgacatcatt 5619
Query: 241 tccacaacaacagataccgagagtaacacttctaaagaagtaacaagtttcatatcaaa 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5620 tccacaacaacagataccgagagtaacacttctaaagaagtaacaagtttcatatcaaa 5678
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 103 aatggagattcaacaaatg 121
||||||| |||||||||||
Sbjct: 1144 aatggagtttcaacaaatg 1162
>PTA.sd.2784.C1 nseq=9
Length = 2456
Score = 34.2 bits (17), Expect = 0.56
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 86 aagctcaaggaggtagtaatggaga 110
||||||||||||| ||| |||||||
Sbjct: 1832 aagctcaaggaggaagttatggaga 1856
>PTA.sd.16190.C1 nseq=41
Length = 2330
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 85 gaagctcaaggaggtag 101
|||||||||||||||||
Sbjct: 1985 gaagctcaaggaggtag 2001
>PTA.sd.15901.C1 nseq=8
Length = 2097
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 80 caatggaagctcaagga 96
|||||||||||||||||
Sbjct: 1867 caatggaagctcaagga 1883
>PTA.sd.15807.C1 nseq=41
Length = 2282
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 85 gaagctcaaggaggtag 101
|||||||||||||||||
Sbjct: 1945 gaagctcaaggaggtag 1961
>PTA.sd.13675.C1 nseq=9
Length = 2085
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 117 aaatggggaaacagaggagac 137
|||||| ||||||||||||||
Sbjct: 1748 aaatggtgaaacagaggagac 1768
>PTA.sd.1049.C1 nseq=4
Length = 1470
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 228 agatgacatcatttcca 244
|||||||||||||||||
Sbjct: 162 agatgacatcatttcca 146
>At3g22690.F
Length = 2937
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1 aatagtttgacaaacag 17
|||||||||||||||||
Sbjct: 1585 aatagtttgacaaacag 1601
>PTA.sd.5734.C1 nseq=3
Length = 6639
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 282 aacaagtttcatatca 297
||||||||||||||||
Sbjct: 5646 aacaagtttcatatca 5631
>PTA.sd.5201.C1 nseq=6
Length = 2909
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 238 atttccacaacaacag 253
||||||||||||||||
Sbjct: 425 atttccacaacaacag 440
>PTA.sd.5139.C1 nseq=3
Length = 2675
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 114 aacaaatggggaaaca 129
||||||||||||||||
Sbjct: 1747 aacaaatggggaaaca 1762
>PTA.sd.3247.C1 nseq=3
Length = 1549
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 114 aacaaatggggaaaca 129
||||||||||||||||
Sbjct: 976 aacaaatggggaaaca 991
>PTA.sd.2786.C1 nseq=17
Length = 1680
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 83 tggaagctcaaggagg 98
||||||||||||||||
Sbjct: 550 tggaagctcaaggagg 565
>PTA.sd.2411.C1 nseq=15
Length = 1463
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 84 ggaagctcaaggaggt 99
||||||||||||||||
Sbjct: 526 ggaagctcaaggaggt 541
>PTA.sd.17408.C1 nseq=5
Length = 929
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 203 tgaataatcaaacaacagga 222
||||||||||| ||||||||
Sbjct: 833 tgaataatcaagcaacagga 814
>PTA.sd.16794.C1 nseq=9
Length = 1783
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 114 aacaaatggggaaaca 129
||||||||||||||||
Sbjct: 390 aacaaatggggaaaca 405
>PTA.sd.16438.C1 nseq=8
Length = 2988
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 70 aaaaataacacaatggaagc 89
||||| ||||||||||||||
Sbjct: 2869 aaaaaaaacacaatggaagc 2850
>PTA.sd.15533.C1 nseq=5
Length = 2179
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 77 acacaatggaagctca 92
||||||||||||||||
Sbjct: 200 acacaatggaagctca 215
>At5g50630.F
Length = 1623
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 114 aacaaatggggaaaca 129
||||||||||||||||
Sbjct: 366 aacaaatggggaaaca 381
>At5g33420.F
Length = 1113
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 154 tctatgaacaaccaaaatat 173
||||||| ||||||||||||
Sbjct: 306 tctatgaccaaccaaaatat 287
>At5g11570.F
Length = 1446
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 163 aaccaaaatatgcaag 178
||||||||||||||||
Sbjct: 109 aaccaaaatatgcaag 94
>At1g53810.F
Length = 4569
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 69 gaaaaataacacaatggaag 88
|||| |||||||||||||||
Sbjct: 402 gaaagataacacaatggaag 421
>At1g26170.F
Length = 2796
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 20 catcaagtgagcccaa 35
||||||||||||||||
Sbjct: 319 catcaagtgagcccaa 304
>At5g59780.F PTA.sd.17469.singlet
Length = 708
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 116 caaatggggaaacag 130
|||||||||||||||
Sbjct: 237 caaatggggaaacag 251
>At4g17710.F PTA.sd.12095.singlet
Length = 1986
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 108 agattcaacaaatgg 122
|||||||||||||||
Sbjct: 296 agattcaacaaatgg 310
>At4g16840.F PTA.sd.12027.singlet
Length = 2556
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 139 aaagagagcaatgtt 153
|||||||||||||||
Sbjct: 1462 aaagagagcaatgtt 1476
>PTA.sd.9558.C1 nseq=6
Length = 1476
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 124 gaaacagaggagactaaag 142
|||||||||||||| ||||
Sbjct: 49 gaaacagaggagaccaaag 31
>PTA.sd.8378.C1 nseq=9
Length = 2063
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 61 gattctatgaaaaataaca 79
||||||| |||||||||||
Sbjct: 1161 gattctaagaaaaataaca 1179
>PTA.sd.8185.C1 nseq=4
Length = 2872
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 93 aggaggtagtaatgg 107
|||||||||||||||
Sbjct: 1918 aggaggtagtaatgg 1904
>PTA.sd.7325.C1 nseq=8
Length = 1948
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 185 gaagcaatgaaaatt 199
|||||||||||||||
Sbjct: 1853 gaagcaatgaaaatt 1839
>PTA.sd.6720.C1 nseq=6
Length = 1414
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 276 agaagtaacaagttt 290
|||||||||||||||
Sbjct: 1408 agaagtaacaagttt 1394
>PTA.sd.5146.C1 nseq=12
Length = 1384
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 118 aatggggaaacagaggaga 136
|||||||||||||| ||||
Sbjct: 864 aatggggaaacagatgaga 882
>PTA.sd.3756.C1 nseq=2
Length = 1101
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 178 gatgtaggaagcaatgaaa 196
|||||| ||||||||||||
Sbjct: 51 gatgtaagaagcaatgaaa 33
>PTA.sd.2776.C1 nseq=4
Length = 2926
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 24 aagtgagcccaatgg 38
|||||||||||||||
Sbjct: 2695 aagtgagcccaatgg 2709
>PTA.sd.2572.C1 nseq=4
Length = 1207
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 274 aaagaagtaacaagtttca 292
||||||||||||| |||||
Sbjct: 510 aaagaagtaacaattttca 492
>PTA.sd.2271.C1 nseq=5
Length = 803
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 122 gggaaacagaggaga 136
|||||||||||||||
Sbjct: 428 gggaaacagaggaga 442
>PTA.sd.17818.C1 nseq=4
Length = 4225
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 125 aaacagaggagacta 139
|||||||||||||||
Sbjct: 304 aaacagaggagacta 318
>PTA.sd.17388.C1 nseq=9
Length = 1970
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 93 aggaggtagtaatggagat 111
||||| |||||||||||||
Sbjct: 30 aggagttagtaatggagat 12
>PTA.sd.17204.C1 nseq=4
Length = 1341
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 180 tgtaggaagcaatga 194
|||||||||||||||
Sbjct: 138 tgtaggaagcaatga 124
>PTA.sd.16855.C1 nseq=6
Length = 925
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 121 ggggaaacagaggag 135
|||||||||||||||
Sbjct: 524 ggggaaacagaggag 538
>PTA.sd.16495.C1 nseq=5
Length = 1337
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 160 aacaaccaaaatatg 174
|||||||||||||||
Sbjct: 208 aacaaccaaaatatg 222
>PTA.sd.15998.C1 nseq=7
Length = 2483
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 11 caaacagtacatcaa 25
|||||||||||||||
Sbjct: 102 caaacagtacatcaa 116
>PTA.sd.15995.C1 nseq=6
Length = 1240
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 159 gaacaaccaaaatatgcaa 177
||||||||||||| |||||
Sbjct: 265 gaacaaccaaaatctgcaa 247
>PTA.sd.14403.C1 nseq=19
Length = 965
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 203 tgaataatcaaacaa 217
|||||||||||||||
Sbjct: 652 tgaataatcaaacaa 638
>PTA.sd.14186.C1 nseq=4
Length = 1968
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 123 ggaaacagaggagac 137
|||||||||||||||
Sbjct: 1300 ggaaacagaggagac 1314
>PTA.sd.13786.C1 nseq=13
Length = 1840
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 228 agatgacatcatttc 242
|||||||||||||||
Sbjct: 900 agatgacatcatttc 886
>PTA.sd.12708.C1 nseq=13
Length = 2096
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 215 caacaggaacaggag 229
|||||||||||||||
Sbjct: 667 caacaggaacaggag 681
>PTA.sd.1267.C1 nseq=10
Length = 1331
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 137 ctaaagagagcaatg 151
|||||||||||||||
Sbjct: 1090 ctaaagagagcaatg 1104
>PTA.sd.12096.C1 nseq=6
Length = 1336
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 138 taaagagagcaatgtttct 156
||||| |||||||||||||
Sbjct: 183 taaagtgagcaatgtttct 201
>PTA.sd.11860.C1 nseq=5
Length = 1518
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 106 ggagattcaacaaat 120
|||||||||||||||
Sbjct: 586 ggagattcaacaaat 600
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 299
length of database: 39,126,732
effective HSP length: 16
effective length of query: 283
effective length of database: 38,700,540
effective search space: 10952252820
effective search space used: 10952252820
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)