BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_10920
(296 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40480.F 587 e-167
PTA.sd.5954.C1 nseq=3 34 0.55
PTA.sd.12368.C1 nseq=5 34 0.55
At5g17830.F 34 0.55
At2g26820.F 34 0.55
At5g51670.F PTA.sd.16872.singlet 32 2.2
PTA.sd.8682.C1 nseq=13 32 2.2
PTA.sd.464.C1 nseq=2 32 2.2
PTA.sd.2800.C1 nseq=19 32 2.2
PTA.sd.14215.C1 nseq=6 32 2.2
PTA.sd.1164.C1 nseq=7 32 2.2
At5g43800.F 32 2.2
At5g37110.F 32 2.2
At5g04020.F 32 2.2
At3g08830.F 32 2.2
>At5g40480.F
Length = 5760
Score = 587 bits (296), Expect = e-167
Identities = 296/296 (100%)
Strand = Plus / Plus
Query: 1 tcgatgtctgctatgacacaggagagtcactagtagcttcgtctaaagatggttactctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5417 tcgatgtctgctatgacacaggagagtcactagtagcttcgtctaaagatggttactctg 5476
Query: 61 ttttgttgaagatactatggggcgttttggtgttggttgtatcagtgatcatcttgatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5477 ttttgttgaagatactatggggcgttttggtgttggttgtatcagtgatcatcttgatga 5536
Query: 121 aagtgatagatcgacaagtgcccacaggagctactggaacggcaacatacagtggaaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5537 aagtgatagatcgacaagtgcccacaggagctactggaacggcaacatacagtggaaatg 5596
Query: 181 cagcacagggaacaccagaaagaagaagcggcacagttatataccatgaggaatctccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5597 cagcacagggaacaccagaaagaagaagcggcacagttatataccatgaggaatctccaa 5656
Query: 241 gaacaccatcaccatttatggagtatgtgaagagaacagtggatgaaactccctac 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5657 gaacaccatcaccatttatggagtatgtgaagagaacagtggatgaaactccctac 5712
>PTA.sd.5954.C1 nseq=3
Length = 960
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 253 catttatggagtatgtgaaga 273
|||||||||||| ||||||||
Sbjct: 290 catttatggagtctgtgaaga 310
>PTA.sd.12368.C1 nseq=5
Length = 570
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 197 agaaagaagaagcggca 213
|||||||||||||||||
Sbjct: 285 agaaagaagaagcggca 301
>At5g17830.F
Length = 1425
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 96 gttgtatcagtgatcat 112
|||||||||||||||||
Sbjct: 592 gttgtatcagtgatcat 608
>At2g26820.F
Length = 1392
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 180 gcagcacagggaacacc 196
|||||||||||||||||
Sbjct: 56 gcagcacagggaacacc 72
>At5g51670.F PTA.sd.16872.singlet
Length = 1425
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 117 atgaaagtgatagatc 132
||||||||||||||||
Sbjct: 598 atgaaagtgatagatc 613
>PTA.sd.8682.C1 nseq=13
Length = 1494
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 61 ttttgttgaagatact 76
||||||||||||||||
Sbjct: 929 ttttgttgaagatact 944
>PTA.sd.464.C1 nseq=2
Length = 1174
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 48 gatggttactctgttt 63
||||||||||||||||
Sbjct: 361 gatggttactctgttt 376
>PTA.sd.2800.C1 nseq=19
Length = 2561
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 90 gtgttggttgtatcag 105
||||||||||||||||
Sbjct: 2396 gtgttggttgtatcag 2411
>PTA.sd.14215.C1 nseq=6
Length = 3807
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 273 agaacagtggatgaaa 288
||||||||||||||||
Sbjct: 3363 agaacagtggatgaaa 3378
>PTA.sd.1164.C1 nseq=7
Length = 1322
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 109 tcatcttgatgaaagt 124
||||||||||||||||
Sbjct: 1173 tcatcttgatgaaagt 1158
>At5g43800.F
Length = 1548
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 115 tgatgaaagtgataga 130
||||||||||||||||
Sbjct: 614 tgatgaaagtgataga 629
>At5g37110.F
Length = 3924
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 35 agcttcgtctaaagat 50
||||||||||||||||
Sbjct: 3503 agcttcgtctaaagat 3518
>At5g04020.F
Length = 4488
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 200 aagaagaagcggcacagtta 219
|||||||||||| |||||||
Sbjct: 3231 aagaagaagcggaacagtta 3250
>At3g08830.F
Length = 810
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 265 atgtgaagagaacagtggat 284
||||||||||||||| ||||
Sbjct: 308 atgtgaagagaacagaggat 327
>At2g05080.F
Length = 3660
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 35 agcttcgtctaaagat 50
||||||||||||||||
Sbjct: 3188 agcttcgtctaaagat 3203
>At1g18530.F
Length = 474
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 242 aacaccatcaccattt 257
||||||||||||||||
Sbjct: 399 aacaccatcaccattt 384
>At1g58210.F PTA.sd.3137.singlet
Length = 3588
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 229 aggaatctccaagaa 243
|||||||||||||||
Sbjct: 2993 aggaatctccaagaa 3007
>PTA.sd.9893.C1 nseq=13
Length = 1966
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 108 atcatcttgatgaaa 122
|||||||||||||||
Sbjct: 1921 atcatcttgatgaaa 1907
>PTA.sd.9647.C1 nseq=2
Length = 3363
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 259 tggagtatgtgaaga 273
|||||||||||||||
Sbjct: 1806 tggagtatgtgaaga 1820
>PTA.sd.9554.C1 nseq=2
Length = 2177
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 259 tggagtatgtgaagagaac 277
|||||| ||||||||||||
Sbjct: 1004 tggagtttgtgaagagaac 1022
>PTA.sd.9418.C1 nseq=14
Length = 2406
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 194 accagaaagaagaag 208
|||||||||||||||
Sbjct: 53 accagaaagaagaag 39
>PTA.sd.8713.C1 nseq=5
Length = 1662
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 199 aaagaagaagcggca 213
|||||||||||||||
Sbjct: 1155 aaagaagaagcggca 1141
>PTA.sd.792.C1 nseq=4
Length = 1919
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 cagaaagaagaagcg 210
|||||||||||||||
Sbjct: 720 cagaaagaagaagcg 734
>PTA.sd.6634.C1 nseq=3
Length = 2233
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 agaaagaagaagcgg 211
|||||||||||||||
Sbjct: 1679 agaaagaagaagcgg 1693
>PTA.sd.6228.C1 nseq=4
Length = 1012
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 91 tgttggttgtatcagtgat 109
||||||||||||| |||||
Sbjct: 347 tgttggttgtatcggtgat 365
>PTA.sd.4837.C1 nseq=2
Length = 2208
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 92 gttggttgtatcagt 106
|||||||||||||||
Sbjct: 174 gttggttgtatcagt 160
>PTA.sd.4303.C1 nseq=13
Length = 1083
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 120 aaagtgatagatcga 134
|||||||||||||||
Sbjct: 122 aaagtgatagatcga 136
>PTA.sd.3889.C1 nseq=11
Length = 2877
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 240 agaacaccatcacca 254
|||||||||||||||
Sbjct: 912 agaacaccatcacca 898
>PTA.sd.3737.C1 nseq=9
Length = 1339
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 259 tggagtatgtgaaga 273
|||||||||||||||
Sbjct: 756 tggagtatgtgaaga 770
>PTA.sd.2485.C1 nseq=7
Length = 3512
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 62 tttgttgaagatact 76
|||||||||||||||
Sbjct: 1625 tttgttgaagatact 1611
>PTA.sd.2379.C1 nseq=4
Length = 3530
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 276 acagtggatgaaact 290
|||||||||||||||
Sbjct: 1935 acagtggatgaaact 1949
>PTA.sd.17292.C1 nseq=3
Length = 3414
Score = 30.2 bits (15), Expect = 8.6
Identities = 24/26 (92%), Gaps = 2/26 (7%)
Strand = Plus / Minus
Query: 232 aatctccaag--aacaccatcaccat 255
|||||||||| ||||||||||||||
Sbjct: 3246 aatctccaagtaaacaccatcaccat 3221
>PTA.sd.17170.C1 nseq=11
Length = 1041
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 106 tgatcatcttgatga 120
|||||||||||||||
Sbjct: 728 tgatcatcttgatga 742
>PTA.sd.17046.C1 nseq=95
Length = 1404
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 51 ggttactctgttttg 65
|||||||||||||||
Sbjct: 40 ggttactctgttttg 26
>PTA.sd.15841.C1 nseq=8
Length = 2170
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 255 tttatggagtatgtgaaga 273
|||||||||||| ||||||
Sbjct: 1715 tttatggagtatatgaaga 1697
>PTA.sd.1529.C1 nseq=10
Length = 4466
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 197 agaaagaagaagcggcaca 215
|||||||||||| ||||||
Sbjct: 4204 agaaagaagaagtggcaca 4222
>PTA.sd.14881.C1 nseq=2
Length = 2347
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 240 agaacaccatcacca 254
|||||||||||||||
Sbjct: 515 agaacaccatcacca 501
>PTA.sd.14562.C1 nseq=12
Length = 2469
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 259 tggagtatgtgaaga 273
|||||||||||||||
Sbjct: 1416 tggagtatgtgaaga 1430
>PTA.sd.14405.C1 nseq=14
Length = 1202
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 46 aagatggttactctg 60
|||||||||||||||
Sbjct: 970 aagatggttactctg 984
>PTA.sd.144.C1 nseq=10
Length = 1377
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 55 actctgttttgttga 69
|||||||||||||||
Sbjct: 69 actctgttttgttga 83
>PTA.sd.13053.C1 nseq=88
Length = 3314
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 103 cagtgatcatcttga 117
|||||||||||||||
Sbjct: 1667 cagtgatcatcttga 1653
>PTA.sd.12636.C1 nseq=23
Length = 1435
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 242 aacaccatcaccatt 256
|||||||||||||||
Sbjct: 1108 aacaccatcaccatt 1094
>PTA.sd.12510.C1 nseq=5
Length = 1448
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 85 ttttggtgttggttg 99
|||||||||||||||
Sbjct: 279 ttttggtgttggttg 293
>PTA.sd.11584.C1 nseq=8
Length = 1462
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 59 tgttttgttgaagat 73
|||||||||||||||
Sbjct: 97 tgttttgttgaagat 83
>PTA.sd.10926.C1 nseq=8
Length = 1905
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 52 gttactctgttttgt 66
|||||||||||||||
Sbjct: 647 gttactctgttttgt 633
>PTA.sd.10901.C1 nseq=6
Length = 2363
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 50 tggttactctgtttt 64
|||||||||||||||
Sbjct: 1799 tggttactctgtttt 1785
>PTA.sd.10322.C1 nseq=5
Length = 2243
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 53 ttactctgttttgtt 67
|||||||||||||||
Sbjct: 19 ttactctgttttgtt 5
>At4g38760.F
Length = 1686
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 21 ggagagtcactagta 35
|||||||||||||||
Sbjct: 1232 ggagagtcactagta 1218
>At3g61330.F
Length = 4059
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 259 tggagtatgtgaaga 273
|||||||||||||||
Sbjct: 3929 tggagtatgtgaaga 3943
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 296
length of database: 39,126,732
effective HSP length: 16
effective length of query: 280
effective length of database: 38,700,540
effective search space: 10836151200
effective search space used: 10836151200
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)