BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_10772
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g32820.F 595 e-170
At5g54620.F 34 0.56
PTA.sd.6492.C1 nseq=3 32 2.2
PTA.sd.2458.C1 nseq=14 32 2.2
PTA.sd.17231.C1 nseq=5 32 2.2
PTA.sd.8449.C1 nseq=15 30 8.7
PTA.sd.6637.C1 nseq=13 30 8.7
PTA.sd.6372.C1 nseq=9 30 8.7
PTA.sd.5547.C1 nseq=6 30 8.7
PTA.sd.5289.C1 nseq=4 30 8.7
PTA.sd.3115.C1 nseq=30 30 8.7
PTA.sd.15726.C1 nseq=2 30 8.7
PTA.sd.15309.C1 nseq=17 30 8.7
PTA.sd.14993.C1 nseq=6 30 8.7
PTA.sd.14778.C1 nseq=2 30 8.7
>At4g32820.F
Length = 5454
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 gattcgaaagcgtttcaagaatccaaagttgtctaatagtttttcggcaaaagttggcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4686 gattcgaaagcgtttcaagaatccaaagttgtctaatagtttttcggcaaaagttggcag 4745
Query: 61 acatgcttctcttgcttggtgccgagctctgattataagcttggcactgataactccctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4746 acatgcttctcttgcttggtgccgagctctgattataagcttggcactgataactccctt 4805
Query: 121 gcagccagtatcctcggaggaaagtcaagcaataactccatcatttggtttactggaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4806 gcagccagtatcctcggaggaaagtcaagcaataactccatcatttggtttactggaaaa 4865
Query: 181 cagacgggtgctttgtgttgatctccagtctgaattctggagttcttcgttcgaggatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4866 cagacgggtgctttgtgttgatctccagtctgaattctggagttcttcgttcgaggatcc 4925
Query: 241 cttagaatcccaaatgcttgaggcaaaatggcgccctgttctgtccaagattaagaacgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4926 cttagaatcccaaatgcttgaggcaaaatggcgccctgttctgtccaagattaagaacgt 4985
>At5g54620.F
Length = 1170
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 37 tagtttttcggcaaaagttgg 57
|||||||| ||||||||||||
Sbjct: 201 tagttttttggcaaaagttgg 181
>PTA.sd.6492.C1 nseq=3
Length = 1522
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 154 aactccatcatttggtttac 173
||||||| ||||||||||||
Sbjct: 586 aactccaacatttggtttac 567
>PTA.sd.2458.C1 nseq=14
Length = 2152
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 204 tccagtctgaattctg 219
||||||||||||||||
Sbjct: 1890 tccagtctgaattctg 1905
>PTA.sd.17231.C1 nseq=5
Length = 2837
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 148 agcaataactccatca 163
||||||||||||||||
Sbjct: 1049 agcaataactccatca 1034
>PTA.sd.8449.C1 nseq=15
Length = 2901
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 248 tcccaaatgcttgaggcaa 266
|||||| ||||||||||||
Sbjct: 2044 tcccaagtgcttgaggcaa 2026
>PTA.sd.6637.C1 nseq=13
Length = 1846
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 189 tgctttgtgttgatc 203
|||||||||||||||
Sbjct: 1357 tgctttgtgttgatc 1343
>PTA.sd.6372.C1 nseq=9
Length = 5038
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 239 cccttagaatcccaa 253
|||||||||||||||
Sbjct: 1880 cccttagaatcccaa 1866
>PTA.sd.5547.C1 nseq=6
Length = 2460
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 213 aattctggagttctt 227
|||||||||||||||
Sbjct: 334 aattctggagttctt 348
>PTA.sd.5289.C1 nseq=4
Length = 2668
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 282 tgtccaagattaaga 296
|||||||||||||||
Sbjct: 2436 tgtccaagattaaga 2450
>PTA.sd.3115.C1 nseq=30
Length = 1729
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 191 ctttgtgttgatctc 205
|||||||||||||||
Sbjct: 1056 ctttgtgttgatctc 1042
>PTA.sd.15726.C1 nseq=2
Length = 3103
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 68 tctcttgcttggtgc 82
|||||||||||||||
Sbjct: 2889 tctcttgcttggtgc 2875
>PTA.sd.15309.C1 nseq=17
Length = 1442
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 168 gtttactggaaaaca 182
|||||||||||||||
Sbjct: 987 gtttactggaaaaca 1001
>PTA.sd.14993.C1 nseq=6
Length = 3453
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 22 tccaaagttgtctaa 36
|||||||||||||||
Sbjct: 1538 tccaaagttgtctaa 1552
>PTA.sd.14778.C1 nseq=2
Length = 3573
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 taactccatcatttg 167
|||||||||||||||
Sbjct: 2596 taactccatcatttg 2582
>PTA.sd.14011.C1 nseq=11
Length = 4731
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 152 ataactccatcattt 166
|||||||||||||||
Sbjct: 3397 ataactccatcattt 3383
>PTA.sd.13050.C1 nseq=14
Length = 3797
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 217 ctggagttcttcgtt 231
|||||||||||||||
Sbjct: 2666 ctggagttcttcgtt 2652
>PTA.sd.11616.C1 nseq=8
Length = 2033
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 acatgcttctcttgc 75
|||||||||||||||
Sbjct: 1295 acatgcttctcttgc 1309
>PTA.sd.10436.C1 nseq=2
Length = 6450
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 244 agaatcccaaatgct 258
|||||||||||||||
Sbjct: 6338 agaatcccaaatgct 6324
>PTA.sd.1022.C1 nseq=9
Length = 919
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 158 ccatcatttggttta 172
|||||||||||||||
Sbjct: 490 ccatcatttggttta 476
>PTA.sd.10170.C1 nseq=5
Length = 1690
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 160 atcatttggtttact 174
|||||||||||||||
Sbjct: 1484 atcatttggtttact 1470
>At5g44690.F
Length = 2055
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 240 ccttagaatcccaaa 254
|||||||||||||||
Sbjct: 1018 ccttagaatcccaaa 1004
>At5g27570.F
Length = 1236
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 69 ctcttgcttggtgcc 83
|||||||||||||||
Sbjct: 815 ctcttgcttggtgcc 829
>At5g23270.F
Length = 1545
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 94 tataagcttggcactgata 112
||||| |||||||||||||
Sbjct: 1167 tataatcttggcactgata 1185
>At4g28670.F
Length = 1878
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 107 ctgataactcccttg 121
|||||||||||||||
Sbjct: 1619 ctgataactcccttg 1633
>At3g17360.F
Length = 6027
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 202 tctccagtctgaatt 216
|||||||||||||||
Sbjct: 2622 tctccagtctgaatt 2636
>At2g15870.F
Length = 3795
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 58 cagacatgcttctct 72
|||||||||||||||
Sbjct: 1263 cagacatgcttctct 1277
>At1g64540.F
Length = 1335
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 276 ctgttctgtccaaga 290
|||||||||||||||
Sbjct: 92 ctgttctgtccaaga 106
>At1g56540.F
Length = 3291
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 166 tggtttactggaaaa 180
|||||||||||||||
Sbjct: 1690 tggtttactggaaaa 1704
>At1g31620.F
Length = 336
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 189 tgctttgtgttgatc 203
|||||||||||||||
Sbjct: 141 tgctttgtgttgatc 127
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)