BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_10768
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31570.F 595 e-170
At3g61290.F 36 0.14
PTA.sd.8227.C1 nseq=44 32 2.2
PTA.sd.469.C1 nseq=6 32 2.2
PTA.sd.14739.C1 nseq=7 32 2.2
At5g53670.F 32 2.2
At1g77890.F PTA.sd.4472.singlet 30 8.7
PTA.sd.9263.C1 nseq=8 30 8.7
PTA.sd.8758.C1 nseq=30 30 8.7
PTA.sd.85.C1 nseq=15 30 8.7
PTA.sd.8238.C1 nseq=8 30 8.7
PTA.sd.7754.C1 nseq=15 30 8.7
PTA.sd.590.C1 nseq=5 30 8.7
PTA.sd.4664.C1 nseq=38 30 8.7
PTA.sd.422.C1 nseq=2 30 8.7
>At4g31570.F
Length = 8139
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 gtcttggttcgacacgatagcttcactacttggtatagaagattcgctgtccactgatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7497 gtcttggttcgacacgatagcttcactacttggtatagaagattcgctgtccactgatgc 7556
Query: 61 tgacagtcatataaaccactacatggagacatttgagaaaaggatagcgtctatgctatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7557 tgacagtcatataaaccactacatggagacatttgagaaaaggatagcgtctatgctatc 7616
Query: 121 tgaaatagacgaattacggttggttggacaaagcaaggacgttttgcttgaaggcgagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7617 tgaaatagacgaattacggttggttggacaaagcaaggacgttttgcttgaaggcgagag 7676
Query: 181 gagtagagtggctgagctcagacagaaagaagcaactcttgagaaattcttacttgagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7677 gagtagagtggctgagctcagacagaaagaagcaactcttgagaaattcttacttgagaa 7736
Query: 241 agaatcccaacaagacatttcaacaagctcgacgtcagagatcgttgaagtggaacctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7737 agaatcccaacaagacatttcaacaagctcgacgtcagagatcgttgaagtggaacctct 7796
>At3g61290.F
Length = 1368
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 249 aacaagacatttcaacaa 266
||||||||||||||||||
Sbjct: 1342 aacaagacatttcaacaa 1359
>PTA.sd.8227.C1 nseq=44
Length = 5749
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 256 catttcaacaagctcg 271
||||||||||||||||
Sbjct: 4768 catttcaacaagctcg 4753
>PTA.sd.469.C1 nseq=6
Length = 1311
Score = 32.2 bits (16), Expect = 2.2
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 84 tggagacatttgagaaaaggatag 107
|||||||||||| |||| ||||||
Sbjct: 626 tggagacatttgtgaaatggatag 649
>PTA.sd.14739.C1 nseq=7
Length = 2115
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 216 ctcttgagaaattctt 231
||||||||||||||||
Sbjct: 698 ctcttgagaaattctt 683
>At5g53670.F
Length = 735
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 96 agaaaaggatagcgtc 111
||||||||||||||||
Sbjct: 63 agaaaaggatagcgtc 48
>At1g77890.F PTA.sd.4472.singlet
Length = 681
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 23 tcactacttggtata 37
|||||||||||||||
Sbjct: 403 tcactacttggtata 417
>PTA.sd.9263.C1 nseq=8
Length = 2392
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 281 atcgttgaagtggaa 295
|||||||||||||||
Sbjct: 128 atcgttgaagtggaa 114
>PTA.sd.8758.C1 nseq=30
Length = 1704
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 200 agacagaaagaagca 214
|||||||||||||||
Sbjct: 1297 agacagaaagaagca 1311
>PTA.sd.85.C1 nseq=15
Length = 764
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 249 aacaagacatttcaa 263
|||||||||||||||
Sbjct: 450 aacaagacatttcaa 436
>PTA.sd.8238.C1 nseq=8
Length = 1814
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 270 cgacgtcagagatcg 284
|||||||||||||||
Sbjct: 291 cgacgtcagagatcg 277
>PTA.sd.7754.C1 nseq=15
Length = 5500
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 205 gaaagaagcaactcttgag 223
|||||| ||||||||||||
Sbjct: 4747 gaaagaggcaactcttgag 4729
>PTA.sd.590.C1 nseq=5
Length = 3420
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 220 tgagaaattcttact 234
|||||||||||||||
Sbjct: 2508 tgagaaattcttact 2522
>PTA.sd.4664.C1 nseq=38
Length = 2205
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 232 acttgagaaagaatc 246
|||||||||||||||
Sbjct: 971 acttgagaaagaatc 985
>PTA.sd.422.C1 nseq=2
Length = 1615
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 17 atagcttcactactt 31
|||||||||||||||
Sbjct: 456 atagcttcactactt 470
>PTA.sd.3837.C1 nseq=2
Length = 1300
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 17 atagcttcactactt 31
|||||||||||||||
Sbjct: 101 atagcttcactactt 115
>PTA.sd.2366.C1 nseq=6
Length = 1918
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 217 tcttgagaaattctt 231
|||||||||||||||
Sbjct: 242 tcttgagaaattctt 256
>PTA.sd.17410.C1 nseq=2
Length = 2468
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 50 tccactgatgctgac 64
|||||||||||||||
Sbjct: 787 tccactgatgctgac 801
>PTA.sd.16455.C1 nseq=6
Length = 1512
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 218 cttgagaaattctta 232
|||||||||||||||
Sbjct: 509 cttgagaaattctta 495
>PTA.sd.16391.C1 nseq=2
Length = 933
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 85 ggagacatttgagaa 99
|||||||||||||||
Sbjct: 428 ggagacatttgagaa 442
>PTA.sd.16224.C1 nseq=4
Length = 1722
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 258 tttcaacaagctcga 272
|||||||||||||||
Sbjct: 851 tttcaacaagctcga 865
>PTA.sd.16.C1 nseq=6
Length = 631
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 200 agacagaaagaagca 214
|||||||||||||||
Sbjct: 534 agacagaaagaagca 520
>PTA.sd.15367.C1 nseq=3
Length = 929
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 17 atagcttcactactt 31
|||||||||||||||
Sbjct: 915 atagcttcactactt 929
>PTA.sd.14653.C1 nseq=4
Length = 4608
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 25 actacttggtataga 39
|||||||||||||||
Sbjct: 3367 actacttggtataga 3381
>PTA.sd.13046.C1 nseq=5
Length = 3937
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 253 agacatttcaacaag 267
|||||||||||||||
Sbjct: 2652 agacatttcaacaag 2638
>PTA.sd.1104.C1 nseq=19
Length = 2824
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 203 cagaaagaagcaact 217
|||||||||||||||
Sbjct: 1479 cagaaagaagcaact 1493
>At4g15810.F
Length = 1581
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 18 tagcttcactacttg 32
|||||||||||||||
Sbjct: 184 tagcttcactacttg 170
>At3g49030.F
Length = 1332
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 217 tcttgagaaattctt 231
|||||||||||||||
Sbjct: 1113 tcttgagaaattctt 1127
>At1g16910.F
Length = 495
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 170 gaaggcgagaggagt 184
|||||||||||||||
Sbjct: 417 gaaggcgagaggagt 431
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)