BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_10643
(298 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g48770.F 591 e-168
PTA.sd.7232.C1 nseq=11 36 0.14
At5g42930.F 36 0.14
PTA.sd.8584.C1 nseq=12 34 0.56
PTA.sd.17255.C1 nseq=7 34 0.56
At1g80660.F 34 0.56
At1g24460.F PTA.sd.1787.singlet 32 2.2
PTA.sd.7689.C1 nseq=24 32 2.2
PTA.sd.6995.C1 nseq=2 32 2.2
PTA.sd.4606.C1 nseq=25 32 2.2
PTA.sd.4309.C1 nseq=8 32 2.2
PTA.sd.3932.C1 nseq=9 32 2.2
PTA.sd.2710.C1 nseq=11 32 2.2
PTA.sd.1878.C1 nseq=12 32 2.2
PTA.sd.1341.C1 nseq=9 32 2.2
>At3g48770.F
Length = 5700
Score = 591 bits (298), Expect = e-168
Identities = 298/298 (100%)
Strand = Plus / Plus
Query: 1 agcagagaagctcctctctgagtccttttcgcgtttgcctgtacactcaccggattgcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4896 agcagagaagctcctctctgagtccttttcgcgtttgcctgtacactcaccggattgcaa 4955
Query: 61 caacaacgacggagtcatgttatctagcataagcgacgtgttcatagctgatgacttgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4956 caacaacgacggagtcatgttatctagcataagcgacgtgttcatagctgatgacttgct 5015
Query: 121 cttgaaagatatgtttattgattctcctgttttcgtttggtatccaactccaagcattcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5016 cttgaaagatatgtttattgattctcctgttttcgtttggtatccaactccaagcattcc 5075
Query: 181 tacattgtcccgaaccagacttattgagatttatcgaaacatcggtgtcaaagaggtctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5076 tacattgtcccgaaccagacttattgagatttatcgaaacatcggtgtcaaagaggtctc 5135
Query: 241 caaatgcgtcgagatcgcagaagctgatctaaccggattcaaaaccgagctgcaagag 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5136 caaatgcgtcgagatcgcagaagctgatctaaccggattcaaaaccgagctgcaagag 5193
>PTA.sd.7232.C1 nseq=11
Length = 1660
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 54 attgcaacaacaacgacg 71
||||||||||||||||||
Sbjct: 1063 attgcaacaacaacgacg 1080
>At5g42930.F
Length = 714
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 123 tgaaagatatgtttattg 140
||||||||||||||||||
Sbjct: 564 tgaaagatatgtttattg 581
>PTA.sd.8584.C1 nseq=12
Length = 3241
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 127 agatatgtttattgatt 143
|||||||||||||||||
Sbjct: 3179 agatatgtttattgatt 3195
>PTA.sd.17255.C1 nseq=7
Length = 3228
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 271 aaccggattcaaaaccg 287
|||||||||||||||||
Sbjct: 2708 aaccggattcaaaaccg 2724
>At1g80660.F
Length = 2865
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 168 ctccaagcattcctaca 184
|||||||||||||||||
Sbjct: 1165 ctccaagcattcctaca 1149
>At1g24460.F PTA.sd.1787.singlet
Length = 5376
Score = 32.2 bits (16), Expect = 2.2
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 126 aagatatgtttattgattctcctg 149
||||||||||| ||||| ||||||
Sbjct: 128 aagatatgtttgttgatgctcctg 151
>PTA.sd.7689.C1 nseq=24
Length = 1355
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 273 ccggattcaaaaccga 288
||||||||||||||||
Sbjct: 577 ccggattcaaaaccga 592
>PTA.sd.6995.C1 nseq=2
Length = 1511
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 172 aagcattcctacattg 187
||||||||||||||||
Sbjct: 734 aagcattcctacattg 749
>PTA.sd.4606.C1 nseq=25
Length = 2472
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 282 aaaccgagctgcaaga 297
||||||||||||||||
Sbjct: 2262 aaaccgagctgcaaga 2247
>PTA.sd.4309.C1 nseq=8
Length = 3209
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 39 ctgtacactcaccgga 54
||||||||||||||||
Sbjct: 875 ctgtacactcaccgga 890
>PTA.sd.3932.C1 nseq=9
Length = 1143
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 99 tgttcatagctgatga 114
||||||||||||||||
Sbjct: 802 tgttcatagctgatga 817
>PTA.sd.2710.C1 nseq=11
Length = 1662
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 130 tatgtttattgattct 145
||||||||||||||||
Sbjct: 886 tatgtttattgattct 901
>PTA.sd.1878.C1 nseq=12
Length = 792
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 73 agtcatgttatctagc 88
||||||||||||||||
Sbjct: 355 agtcatgttatctagc 340
>PTA.sd.1341.C1 nseq=9
Length = 3134
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 52 ggattgcaacaacaac 67
||||||||||||||||
Sbjct: 258 ggattgcaacaacaac 273
>PTA.sd.12127.C1 nseq=3
Length = 1065
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 54 attgcaacaacaacga 69
||||||||||||||||
Sbjct: 143 attgcaacaacaacga 158
>PTA.sd.10377.C1 nseq=10
Length = 4329
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 108 ctgatgacttgctctt 123
||||||||||||||||
Sbjct: 3931 ctgatgacttgctctt 3916
>At5g36860.F
Length = 3615
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 156 tttggtatccaactcc 171
||||||||||||||||
Sbjct: 2472 tttggtatccaactcc 2457
>At5g34990.F
Length = 1995
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 156 tttggtatccaactcc 171
||||||||||||||||
Sbjct: 1536 tttggtatccaactcc 1521
>At5g14010.F
Length = 486
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 59 aacaacaacgacggag 74
||||||||||||||||
Sbjct: 412 aacaacaacgacggag 427
>At4g10990.F
Length = 3612
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 126 aagatatgtttattga 141
||||||||||||||||
Sbjct: 3466 aagatatgtttattga 3451
>At4g08880.F
Length = 3528
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 156 tttggtatccaactcc 171
||||||||||||||||
Sbjct: 2091 tttggtatccaactcc 2076
>At4g05280.F
Length = 3939
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 156 tttggtatccaactcc 171
||||||||||||||||
Sbjct: 2283 tttggtatccaactcc 2268
>At4g03300.F
Length = 3858
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 156 tttggtatccaactcc 171
||||||||||||||||
Sbjct: 2703 tttggtatccaactcc 2688
>At3g42730.F
Length = 3945
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 156 tttggtatccaactcc 171
||||||||||||||||
Sbjct: 2481 tttggtatccaactcc 2466
>At3g24390.F
Length = 3348
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 156 tttggtatccaactcc 171
||||||||||||||||
Sbjct: 2205 tttggtatccaactcc 2190
>At2g32940.F
Length = 2664
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 8 aagctcctctctgagt 23
||||||||||||||||
Sbjct: 535 aagctcctctctgagt 520
>At2g25230.F
Length = 705
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 240 ccaaatgcgtcgagatcgca 259
||||||| ||||||||||||
Sbjct: 293 ccaaatgggtcgagatcgca 312
>At2g14770.F
Length = 5271
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 156 tttggtatccaactcc 171
||||||||||||||||
Sbjct: 2298 tttggtatccaactcc 2283
>At2g05560.F
Length = 4416
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 156 tttggtatccaactcc 171
||||||||||||||||
Sbjct: 1974 tttggtatccaactcc 1959
>At1g66250.F
Length = 1257
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 191 cgaaccagacttattg 206
||||||||||||||||
Sbjct: 965 cgaaccagacttattg 980
>At1g56630.F
Length = 1266
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 125 aaagatatgtttattg 140
||||||||||||||||
Sbjct: 854 aaagatatgtttattg 869
>At1g34740.F
Length = 4152
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 156 tttggtatccaactcc 171
||||||||||||||||
Sbjct: 2283 tttggtatccaactcc 2268
>At1g26400.F
Length = 1584
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 112 tgacttgctcttgaaa 127
||||||||||||||||
Sbjct: 1119 tgacttgctcttgaaa 1104
>At1g25886.F
Length = 3606
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 156 tttggtatccaactcc 171
||||||||||||||||
Sbjct: 2373 tttggtatccaactcc 2358
>At1g23110.F
Length = 786
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 99 tgttcatagctgatga 114
||||||||||||||||
Sbjct: 683 tgttcatagctgatga 698
>At1g21860.F
Length = 1617
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 175 cattcctacattgtcc 190
||||||||||||||||
Sbjct: 1467 cattcctacattgtcc 1452
>At1g21850.F
Length = 1656
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 175 cattcctacattgtcc 190
||||||||||||||||
Sbjct: 1467 cattcctacattgtcc 1452
>At1g08220.F PTA.sd.557.singlet
Length = 972
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 235 ggtctccaaatgcgt 249
|||||||||||||||
Sbjct: 808 ggtctccaaatgcgt 794
>PTA.sd.9960.C1 nseq=7
Length = 2042
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 50 ccggattgcaacaac 64
|||||||||||||||
Sbjct: 795 ccggattgcaacaac 781
>PTA.sd.8432.C1 nseq=9
Length = 1683
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 141 attctcctgttttcg 155
|||||||||||||||
Sbjct: 1373 attctcctgttttcg 1359
>PTA.sd.8379.C1 nseq=2
Length = 2361
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 160 gtatccaactccaag 174
|||||||||||||||
Sbjct: 2178 gtatccaactccaag 2164
>PTA.sd.8094.C1 nseq=5
Length = 1848
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 124 gaaagatatgtttattgat 142
|||||||||||| ||||||
Sbjct: 1646 gaaagatatgttgattgat 1664
>PTA.sd.7802.C1 nseq=5
Length = 1850
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 aaagaggtctccaaa 244
|||||||||||||||
Sbjct: 1331 aaagaggtctccaaa 1345
>PTA.sd.7740.C1 nseq=6
Length = 3017
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 277 attcaaaaccgagct 291
|||||||||||||||
Sbjct: 1464 attcaaaaccgagct 1478
>PTA.sd.7510.C1 nseq=13
Length = 2883
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 263 gctgatctaaccggattca 281
||||||| |||||||||||
Sbjct: 2061 gctgatccaaccggattca 2043
>PTA.sd.6362.C1 nseq=16
Length = 1428
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 279 tcaaaaccgagctgc 293
|||||||||||||||
Sbjct: 777 tcaaaaccgagctgc 791
>PTA.sd.5582.C1 nseq=30
Length = 635
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 60 acaacaacgacggag 74
|||||||||||||||
Sbjct: 93 acaacaacgacggag 107
>PTA.sd.4673.C1 nseq=6
Length = 1961
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 108 ctgatgacttgctct 122
|||||||||||||||
Sbjct: 805 ctgatgacttgctct 819
>PTA.sd.2987.C1 nseq=11
Length = 1040
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 100 gttcatagctgatga 114
|||||||||||||||
Sbjct: 174 gttcatagctgatga 160
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 298
length of database: 39,126,732
effective HSP length: 16
effective length of query: 282
effective length of database: 38,700,540
effective search space: 10913552280
effective search space used: 10913552280
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)