BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_10311
(295 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67500.F 585 e-167
PTA.sd.8044.C1 nseq=13 34 0.55
PTA.sd.5882.C1 nseq=25 34 0.55
PTA.sd.1762.C1 nseq=9 34 0.55
PTA.sd.15144.C2 nseq=9 34 0.55
At2g41570.F 34 0.55
At4g21880.F PTA.sd.12377.singlet 32 2.2
PTA.sd.16730.C1 nseq=23 32 2.2
PTA.sd.1584.C1 nseq=5 32 2.2
PTA.sd.144.C1 nseq=10 32 2.2
At5g65570.F 32 2.2
At2g11230.F 32 2.2
At5g20840.F PTA.sd.15335.singlet 30 8.6
At2g05210.F PTA.sd.4951.singlet 30 8.6
PTA.sd.9606.C1 nseq=3 30 8.6
>At1g67500.F
Length = 5616
Score = 585 bits (295), Expect = e-167
Identities = 295/295 (100%)
Strand = Plus / Plus
Query: 1 gatccactggttcttttggacgtcgatacaccctaccgactgaatgacttatactacatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5146 gatccactggttcttttggacgtcgatacaccctaccgactgaatgacttatactacatc 5205
Query: 61 aacaaacaaattataccagctttgcaaagggtatttggactcgtgggtgcagacttaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5206 aacaaacaaattataccagctttgcaaagggtatttggactcgtgggtgcagacttaaac 5265
Query: 121 cagtggtttttggagatgccccgtctcaccagaagctcccttggtcaacgtcccttaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5266 cagtggtttttggagatgccccgtctcaccagaagctcccttggtcaacgtcccttaaac 5325
Query: 181 tctaaaaactcacacaaaacaaggattgattatttttatctatcgaaacattgcatcttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5326 tctaaaaactcacacaaaacaaggattgattatttttatctatcgaaacattgcatcttg 5385
Query: 241 tgtggggaagttgttcaagaatctgctcaactatgcaaccggtgccttcaaaata 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5386 tgtggggaagttgttcaagaatctgctcaactatgcaaccggtgccttcaaaata 5440
>PTA.sd.8044.C1 nseq=13
Length = 2316
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 251 ttgttcaagaatctgct 267
|||||||||||||||||
Sbjct: 764 ttgttcaagaatctgct 748
>PTA.sd.5882.C1 nseq=25
Length = 1697
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 227 aacattgcatcttgtgt 243
|||||||||||||||||
Sbjct: 1264 aacattgcatcttgtgt 1248
>PTA.sd.1762.C1 nseq=9
Length = 1574
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 48 cttatactacatcaacaaaca 68
||||||| |||||||||||||
Sbjct: 1520 cttatacaacatcaacaaaca 1500
>PTA.sd.15144.C2 nseq=9
Length = 1172
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 60 caacaaacaaattatac 76
|||||||||||||||||
Sbjct: 1052 caacaaacaaattatac 1036
>At2g41570.F
Length = 1257
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 233 gcatcttgtgtggggaa 249
|||||||||||||||||
Sbjct: 427 gcatcttgtgtggggaa 443
>At4g21880.F PTA.sd.12377.singlet
Length = 2580
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 255 tcaagaatctgctcaa 270
||||||||||||||||
Sbjct: 1184 tcaagaatctgctcaa 1169
>PTA.sd.16730.C1 nseq=23
Length = 3291
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 192 acacaaaacaaggattgatt 211
|||||||| |||||||||||
Sbjct: 2846 acacaaaagaaggattgatt 2865
>PTA.sd.1584.C1 nseq=5
Length = 3054
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 250 gttgttcaagaatctg 265
||||||||||||||||
Sbjct: 2722 gttgttcaagaatctg 2737
>PTA.sd.144.C1 nseq=10
Length = 1377
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 57 catcaacaaacaaatt 72
||||||||||||||||
Sbjct: 129 catcaacaaacaaatt 114
>At5g65570.F
Length = 2217
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 254 ttcaagaatctgctca 269
||||||||||||||||
Sbjct: 1902 ttcaagaatctgctca 1887
>At2g11230.F
Length = 2889
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 255 tcaagaatctgctcaa 270
||||||||||||||||
Sbjct: 974 tcaagaatctgctcaa 959
>At5g20840.F PTA.sd.15335.singlet
Length = 2325
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 3 tccactggttctttt 17
|||||||||||||||
Sbjct: 2234 tccactggttctttt 2220
>At2g05210.F PTA.sd.4951.singlet
Length = 957
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 246 ggaagttgttcaaga 260
|||||||||||||||
Sbjct: 218 ggaagttgttcaaga 204
>PTA.sd.9606.C1 nseq=3
Length = 1322
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 175 ttaaactctaaaaac 189
|||||||||||||||
Sbjct: 30 ttaaactctaaaaac 44
>PTA.sd.9199.C1 nseq=11
Length = 1076
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 aacaaacaaattata 75
|||||||||||||||
Sbjct: 30 aacaaacaaattata 44
>PTA.sd.9084.C1 nseq=24
Length = 1022
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 acacaaaacaaggat 206
|||||||||||||||
Sbjct: 442 acacaaaacaaggat 456
>PTA.sd.7263.C1 nseq=4
Length = 2251
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 247 gaagttgttcaagaatctg 265
|||||||||||||| ||||
Sbjct: 472 gaagttgttcaagagtctg 490
>PTA.sd.7247.C1 nseq=8
Length = 1775
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 247 gaagttgttcaagaa 261
|||||||||||||||
Sbjct: 1243 gaagttgttcaagaa 1257
>PTA.sd.6917.C1 nseq=9
Length = 2878
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 187 aactcacacaaaaca 201
|||||||||||||||
Sbjct: 2840 aactcacacaaaaca 2826
>PTA.sd.4739.C1 nseq=6
Length = 668
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 2 atccactggttcttt 16
|||||||||||||||
Sbjct: 92 atccactggttcttt 106
>PTA.sd.2008.C1 nseq=4
Length = 2696
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 256 caagaatctgctcaa 270
|||||||||||||||
Sbjct: 1155 caagaatctgctcaa 1169
>PTA.sd.1781.C1 nseq=49
Length = 1377
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 244 ggggaagttgttcaa 258
|||||||||||||||
Sbjct: 424 ggggaagttgttcaa 438
>PTA.sd.1773.C1 nseq=6
Length = 2045
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 146 tcaccagaagctccc 160
|||||||||||||||
Sbjct: 418 tcaccagaagctccc 404
>PTA.sd.17415.C1 nseq=14
Length = 785
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 181 tctaaaaactcacac 195
|||||||||||||||
Sbjct: 84 tctaaaaactcacac 70
>PTA.sd.17219.C1 nseq=17
Length = 2088
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 172 cccttaaactctaaa 186
|||||||||||||||
Sbjct: 817 cccttaaactctaaa 831
>PTA.sd.16478.C1 nseq=4
Length = 1201
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 176 taaactctaaaaact 190
|||||||||||||||
Sbjct: 1137 taaactctaaaaact 1123
>PTA.sd.16122.C1 nseq=38
Length = 2844
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 64 aaacaaattatacca 78
|||||||||||||||
Sbjct: 2720 aaacaaattatacca 2734
>PTA.sd.15686.C1 nseq=23
Length = 1234
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 5 cactggttcttttgg 19
|||||||||||||||
Sbjct: 561 cactggttcttttgg 575
>PTA.sd.15351.C1 nseq=7
Length = 2265
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 29 caccctaccgactga 43
|||||||||||||||
Sbjct: 1983 caccctaccgactga 1997
>PTA.sd.13057.C1 nseq=5
Length = 1473
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 253 gttcaagaatctgct 267
|||||||||||||||
Sbjct: 305 gttcaagaatctgct 319
>PTA.sd.13056.C1 nseq=6
Length = 465
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 248 aagttgttcaagaat 262
|||||||||||||||
Sbjct: 114 aagttgttcaagaat 100
>PTA.sd.11769.C1 nseq=2
Length = 3611
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 259 gaatctgctcaacta 273
|||||||||||||||
Sbjct: 508 gaatctgctcaacta 494
>PTA.sd.11329.C1 nseq=19
Length = 2535
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 56 acatcaacaaacaaa 70
|||||||||||||||
Sbjct: 576 acatcaacaaacaaa 562
>PTA.sd.11268.C1 nseq=10
Length = 1744
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 257 aagaatctgctcaac 271
|||||||||||||||
Sbjct: 638 aagaatctgctcaac 652
>PTA.sd.10850.C1 nseq=5
Length = 5455
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 57 catcaacaaacaaat 71
|||||||||||||||
Sbjct: 3923 catcaacaaacaaat 3937
>PTA.sd.10387.C1 nseq=6
Length = 2005
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 2 atccactggttcttt 16
|||||||||||||||
Sbjct: 1475 atccactggttcttt 1461
>At5g36100.F
Length = 711
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 204 gattgattattttta 218
|||||||||||||||
Sbjct: 458 gattgattattttta 444
>At3g02160.F
Length = 1194
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 254 ttcaagaatctgctc 268
|||||||||||||||
Sbjct: 233 ttcaagaatctgctc 247
>At1g72980.F
Length = 645
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 126 gtttttggagatgcc 140
|||||||||||||||
Sbjct: 531 gtttttggagatgcc 545
>At1g69860.F
Length = 1668
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 251 ttgttcaagaatctg 265
|||||||||||||||
Sbjct: 878 ttgttcaagaatctg 864
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 295
length of database: 39,126,732
effective HSP length: 16
effective length of query: 279
effective length of database: 38,700,540
effective search space: 10797450660
effective search space used: 10797450660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)