BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_10095
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g13675.F 589 e-168
PTA.sd.694.C1 nseq=14 34 0.55
PTA.sd.13871.C1 nseq=2 34 0.55
PTA.sd.13870.C1 nseq=8 34 0.55
PTA.sd.13659.C1 nseq=17 34 0.55
PTA.sd.7865.C2 nseq=2 32 2.2
PTA.sd.5712.C1 nseq=3 32 2.2
PTA.sd.2045.C1 nseq=4 32 2.2
PTA.sd.15225.C1 nseq=5 32 2.2
At5g58880.F 32 2.2
At3g26130.F 32 2.2
At2g40050.F 32 2.2
At4g26960.F PTA.sd.12784.singlet 30 8.6
PTA.sd.9854.C1 nseq=6 30 8.6
PTA.sd.9621.C1 nseq=20 30 8.6
>At2g13675.F
Length = 5820
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 gggagaaagaagttcagtgctgatttccagcttatgttcaggcttttgaagctgtttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5416 gggagaaagaagttcagtgctgatttccagcttatgttcaggcttttgaagctgtttctg 5475
Query: 61 ttcataggatcagtggtgatcgtggggatgctattccacttcttgaagctgaccgtggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5476 ttcataggatcagtggtgatcgtggggatgctattccacttcttgaagctgaccgtggga 5535
Query: 121 gacataatgcagtctctgttggcgtttttacccacgggatgggctctccttcagatatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5536 gacataatgcagtctctgttggcgtttttacccacgggatgggctctccttcagatatca 5595
Query: 181 caagtggcgaggccattgatgaagacagtaggaatgtggggatcggtcaaggccttggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5596 caagtggcgaggccattgatgaagacagtaggaatgtggggatcggtcaaggccttggct 5655
Query: 241 agagggtatgagtacatcatgggagttgttatcttcatgccagttactgtactcgcg 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5656 agagggtatgagtacatcatgggagttgttatcttcatgccagttactgtactcgcg 5712
>PTA.sd.694.C1 nseq=14
Length = 1787
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 40 aggcttttgaagctgtt 56
|||||||||||||||||
Sbjct: 843 aggcttttgaagctgtt 859
>PTA.sd.13871.C1 nseq=2
Length = 1884
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 186 ggcgaggccattgatga 202
|||||||||||||||||
Sbjct: 579 ggcgaggccattgatga 563
>PTA.sd.13870.C1 nseq=8
Length = 2022
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 186 ggcgaggccattgatga 202
|||||||||||||||||
Sbjct: 579 ggcgaggccattgatga 563
>PTA.sd.13659.C1 nseq=17
Length = 3427
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 129 gcagtctctgttggcgt 145
|||||||||||||||||
Sbjct: 1714 gcagtctctgttggcgt 1698
>PTA.sd.7865.C2 nseq=2
Length = 706
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 59 tgttcataggatcagt 74
||||||||||||||||
Sbjct: 131 tgttcataggatcagt 146
>PTA.sd.5712.C1 nseq=3
Length = 5092
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 37 ttcaggcttttgaagc 52
||||||||||||||||
Sbjct: 3051 ttcaggcttttgaagc 3036
>PTA.sd.2045.C1 nseq=4
Length = 3535
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 262 ggagttgttatcttca 277
||||||||||||||||
Sbjct: 292 ggagttgttatcttca 277
>PTA.sd.15225.C1 nseq=5
Length = 1516
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 37 ttcaggcttttgaagc 52
||||||||||||||||
Sbjct: 469 ttcaggcttttgaagc 454
>At5g58880.F
Length = 3267
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 91 ctattccacttcttga 106
||||||||||||||||
Sbjct: 1678 ctattccacttcttga 1663
>At3g26130.F
Length = 1656
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 45 tttgaagctgtttctg 60
||||||||||||||||
Sbjct: 325 tttgaagctgtttctg 340
>At2g40050.F
Length = 1830
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 166 ctccttcagatatcac 181
||||||||||||||||
Sbjct: 988 ctccttcagatatcac 973
>At4g26960.F PTA.sd.12784.singlet
Length = 516
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 tgatgaagacagtag 211
|||||||||||||||
Sbjct: 369 tgatgaagacagtag 383
>PTA.sd.9854.C1 nseq=6
Length = 1083
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 tgttcataggatcag 73
|||||||||||||||
Sbjct: 1002 tgttcataggatcag 1016
>PTA.sd.9621.C1 nseq=20
Length = 1885
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 26 tccagcttatgttca 40
|||||||||||||||
Sbjct: 371 tccagcttatgttca 385
>PTA.sd.9619.C1 nseq=9
Length = 1485
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 263 gagttgttatcttca 277
|||||||||||||||
Sbjct: 1202 gagttgttatcttca 1188
>PTA.sd.8940.C1 nseq=5
Length = 629
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 264 agttgttatcttcat 278
|||||||||||||||
Sbjct: 82 agttgttatcttcat 68
>PTA.sd.8831.C1 nseq=2
Length = 1854
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 ttgatgaagacagta 210
|||||||||||||||
Sbjct: 995 ttgatgaagacagta 1009
>PTA.sd.8761.C1 nseq=13
Length = 4253
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 202 aagacagtaggaatg 216
|||||||||||||||
Sbjct: 2611 aagacagtaggaatg 2597
>PTA.sd.7939.C1 nseq=10
Length = 2582
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 163 gctctccttcagata 177
|||||||||||||||
Sbjct: 1938 gctctccttcagata 1952
>PTA.sd.6621.C1 nseq=7
Length = 914
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 48 gaagctgtttctgtt 62
|||||||||||||||
Sbjct: 279 gaagctgtttctgtt 265
>PTA.sd.5823.C2 nseq=9
Length = 1755
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 163 gctctccttcagata 177
|||||||||||||||
Sbjct: 531 gctctccttcagata 517
>PTA.sd.5586.C1 nseq=16
Length = 2118
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 193 ccattgatgaagaca 207
|||||||||||||||
Sbjct: 419 ccattgatgaagaca 433
>PTA.sd.4212.C1 nseq=4
Length = 1440
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 118 ggagacataatgcagtctc 136
|||||||||||||| ||||
Sbjct: 383 ggagacataatgcattctc 401
>PTA.sd.4189.C1 nseq=8
Length = 3164
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 93 attccacttcttgaa 107
|||||||||||||||
Sbjct: 1756 attccacttcttgaa 1742
>PTA.sd.3569.C1 nseq=7
Length = 1748
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 aggccttggctagag 244
|||||||||||||||
Sbjct: 370 aggccttggctagag 384
>PTA.sd.3329.C1 nseq=13
Length = 2818
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 42 gcttttgaagctgtt 56
|||||||||||||||
Sbjct: 640 gcttttgaagctgtt 654
>PTA.sd.1998.C1 nseq=8
Length = 3312
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 aggcttttgaagctg 54
|||||||||||||||
Sbjct: 2279 aggcttttgaagctg 2293
>PTA.sd.1921.C1 nseq=10
Length = 1839
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 101 tcttgaagctgaccg 115
|||||||||||||||
Sbjct: 256 tcttgaagctgaccg 242
>PTA.sd.17930.C1 nseq=23
Length = 3474
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 243 agggtatgagtacat 257
|||||||||||||||
Sbjct: 759 agggtatgagtacat 773
>PTA.sd.17070.C1 nseq=33
Length = 1188
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 265 gttgttatcttcatg 279
|||||||||||||||
Sbjct: 951 gttgttatcttcatg 965
>PTA.sd.17067.C1 nseq=8
Length = 2182
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 58 ctgttcataggatcagtgg 76
|||||||||||| ||||||
Sbjct: 1233 ctgttcataggaacagtgg 1251
>PTA.sd.1695.C1 nseq=26
Length = 1345
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 134 ctctgttggcgtttt 148
|||||||||||||||
Sbjct: 1225 ctctgttggcgtttt 1211
>PTA.sd.15390.C1 nseq=7
Length = 1288
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 101 tcttgaagctgaccg 115
|||||||||||||||
Sbjct: 1113 tcttgaagctgaccg 1099
>PTA.sd.14726.C1 nseq=4
Length = 2311
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 102 cttgaagctgaccgt 116
|||||||||||||||
Sbjct: 1369 cttgaagctgaccgt 1383
>PTA.sd.14071.C1 nseq=6
Length = 2016
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 ttcataggatcagtg 75
|||||||||||||||
Sbjct: 1874 ttcataggatcagtg 1888
>PTA.sd.12588.C1 nseq=9
Length = 3595
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 48 gaagctgtttctgtt 62
|||||||||||||||
Sbjct: 841 gaagctgtttctgtt 855
>PTA.sd.10623.C1 nseq=7
Length = 1445
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 173 agatatcacaagtgg 187
|||||||||||||||
Sbjct: 1021 agatatcacaagtgg 1035
>At5g38230.F
Length = 1482
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 240 tagagggtatgagta 254
|||||||||||||||
Sbjct: 11 tagagggtatgagta 25
>At5g28970.F
Length = 3519
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 61 ttcataggatcagtg 75
|||||||||||||||
Sbjct: 2159 ttcataggatcagtg 2145
>At4g19310.F
Length = 1170
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 61 ttcataggatcagtg 75
|||||||||||||||
Sbjct: 59 ttcataggatcagtg 45
>At4g11530.F
Length = 1995
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 192 gccattgatgaagac 206
|||||||||||||||
Sbjct: 210 gccattgatgaagac 196
>At3g50040.F
Length = 1254
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 238 gctagagggtatgag 252
|||||||||||||||
Sbjct: 418 gctagagggtatgag 432
>At3g31350.F
Length = 600
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 214 atgtggggatcggtc 228
|||||||||||||||
Sbjct: 383 atgtggggatcggtc 397
>At2g34880.F
Length = 2421
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 42 gcttttgaagctgtt 56
|||||||||||||||
Sbjct: 1333 gcttttgaagctgtt 1347
>At2g17490.F
Length = 2469
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 ttgatgaagacagta 210
|||||||||||||||
Sbjct: 1325 ttgatgaagacagta 1339
>At1g35110.F
Length = 3936
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 61 ttcataggatcagtg 75
|||||||||||||||
Sbjct: 2942 ttcataggatcagtg 2928
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)