BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_10092
(298 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.4424.C1 nseq=3 581 e-165
PTA.sd.7598.C1 nseq=24 34 0.56
PTA.sd.1679.C1 nseq=11 34 0.56
At5g28320.F PTA.sd.15796.singlet 32 2.2
At1g59124.F PTA.sd.3155.singlet 32 2.2
PTA.sd.9966.C1 nseq=11 32 2.2
PTA.sd.9756.C1 nseq=25 32 2.2
PTA.sd.9300.C1 nseq=8 32 2.2
PTA.sd.3777.C1 nseq=8 32 2.2
PTA.sd.10914.C1 nseq=4 32 2.2
At1g59218.F 32 2.2
At1g08100.F 32 2.2
At1g02460.F 32 2.2
PTA.sd.8067.C1 nseq=104 30 8.7
PTA.sd.7282.C1 nseq=14 30 8.7
>PTA.sd.4424.C1 nseq=3
Length = 2479
Score = 581 bits (293), Expect = e-165
Identities = 293/293 (100%)
Strand = Plus / Plus
Query: 1 tgaatcgaaatctagaggtcatgtcatagacaacttatttcacagtttcaaaccttccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1634 tgaatcgaaatctagaggtcatgtcatagacaacttatttcacagtttcaaaccttccaa 1693
Query: 61 gaaggagaatgaaatgagcttatcgtcagtggaaaaaagctattcatattacacagcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1694 gaaggagaatgaaatgagcttatcgtcagtggaaaaaagctattcatattacacagcttt 1753
Query: 121 tctaagaaactccataagaaattccgttaccatcttcaattcgggacaacaagtgaaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1754 tctaagaaactccataagaaattccgttaccatcttcaattcgggacaacaagtgaaacc 1813
Query: 181 tatgaaagatgcagtgtgtttgtctgatcctgatattattgcagtcagtaatcacccctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1814 tatgaaagatgcagtgtgtttgtctgatcctgatattattgcagtcagtaatcacccctt 1873
Query: 241 tccggatggaggcaaatccccatttgaggcaacaaaagacggcaaagtgatag 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1874 tccggatggaggcaaatccccatttgaggcaacaaaagacggcaaagtgatag 1926
>PTA.sd.7598.C1 nseq=24
Length = 1045
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 42 acagtttcaaaccttcc 58
|||||||||||||||||
Sbjct: 772 acagtttcaaaccttcc 756
>PTA.sd.1679.C1 nseq=11
Length = 599
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 74 atgagcttatcgtcagt 90
|||||||||||||||||
Sbjct: 470 atgagcttatcgtcagt 454
>At5g28320.F PTA.sd.15796.singlet
Length = 2904
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 198 gtttgtctgatcctga 213
||||||||||||||||
Sbjct: 2785 gtttgtctgatcctga 2770
>At1g59124.F PTA.sd.3155.singlet
Length = 3468
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 179 cctatgaaagatgcag 194
||||||||||||||||
Sbjct: 1006 cctatgaaagatgcag 1021
>PTA.sd.9966.C1 nseq=11
Length = 1366
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 51 aaccttccaagaagga 66
||||||||||||||||
Sbjct: 500 aaccttccaagaagga 485
>PTA.sd.9756.C1 nseq=25
Length = 990
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 176 aaacctatgaaagatg 191
||||||||||||||||
Sbjct: 911 aaacctatgaaagatg 896
>PTA.sd.9300.C1 nseq=8
Length = 1682
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 264 ttgaggcaacaaaaga 279
||||||||||||||||
Sbjct: 1682 ttgaggcaacaaaaga 1667
>PTA.sd.3777.C1 nseq=8
Length = 1887
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 105 catattacacagcttt 120
||||||||||||||||
Sbjct: 112 catattacacagcttt 97
>PTA.sd.10914.C1 nseq=4
Length = 3133
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 198 gtttgtctgatcctga 213
||||||||||||||||
Sbjct: 1226 gtttgtctgatcctga 1211
>At1g59218.F
Length = 3150
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 179 cctatgaaagatgcag 194
||||||||||||||||
Sbjct: 1006 cctatgaaagatgcag 1021
>At1g08100.F
Length = 1569
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 170 caagtgaaacctatgaaaga 189
|||||||||||||| |||||
Sbjct: 930 caagtgaaacctatcaaaga 911
>At1g02460.F
Length = 1476
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 143 tccgttaccatcttcaattc 162
||||||||||||| ||||||
Sbjct: 847 tccgttaccatctacaattc 866
>PTA.sd.8067.C1 nseq=104
Length = 1110
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 134 ataagaaattccgtt 148
|||||||||||||||
Sbjct: 1040 ataagaaattccgtt 1026
>PTA.sd.7282.C1 nseq=14
Length = 1717
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 66 agaatgaaatgagct 80
|||||||||||||||
Sbjct: 860 agaatgaaatgagct 846
>PTA.sd.6413.C1 nseq=5
Length = 1536
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 245 gatggaggcaaatcc 259
|||||||||||||||
Sbjct: 548 gatggaggcaaatcc 534
>PTA.sd.4864.C1 nseq=6
Length = 1989
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 263 tttgaggcaacaaaa 277
|||||||||||||||
Sbjct: 1709 tttgaggcaacaaaa 1695
>PTA.sd.3747.C1 nseq=9
Length = 1741
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 199 tttgtctgatcctga 213
|||||||||||||||
Sbjct: 407 tttgtctgatcctga 421
>PTA.sd.2194.C1 nseq=4
Length = 1748
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 59 aagaaggagaatgaa 73
|||||||||||||||
Sbjct: 1107 aagaaggagaatgaa 1093
>PTA.sd.17679.C1 nseq=3
Length = 2268
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 gaaggagaatgaaat 75
|||||||||||||||
Sbjct: 1433 gaaggagaatgaaat 1447
>PTA.sd.17017.C1 nseq=10
Length = 1279
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 271 aacaaaagacggcaa 285
|||||||||||||||
Sbjct: 205 aacaaaagacggcaa 219
>PTA.sd.16874.C1 nseq=7
Length = 3158
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 45 gtttcaaaccttcca 59
|||||||||||||||
Sbjct: 1289 gtttcaaaccttcca 1275
>PTA.sd.1576.C1 nseq=2
Length = 1399
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 203 tctgatcctgatattattg 221
|||||| ||||||||||||
Sbjct: 736 tctgattctgatattattg 754
>PTA.sd.14236.C1 nseq=3
Length = 1919
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 196 gtgtttgtctgatcc 210
|||||||||||||||
Sbjct: 1481 gtgtttgtctgatcc 1467
>PTA.sd.13727.C1 nseq=8
Length = 4627
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 108 attacacagcttttc 122
|||||||||||||||
Sbjct: 4526 attacacagcttttc 4512
>PTA.sd.128.C1 nseq=3
Length = 3999
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 55 ttccaagaaggagaa 69
|||||||||||||||
Sbjct: 2168 ttccaagaaggagaa 2154
>PTA.sd.1201.C1 nseq=25
Length = 1981
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 115 agcttttctaagaaactcc 133
|||||||||||||| ||||
Sbjct: 1121 agcttttctaagaatctcc 1103
>PTA.sd.1200.C1 nseq=10
Length = 1880
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 115 agcttttctaagaaactcc 133
|||||||||||||| ||||
Sbjct: 1136 agcttttctaagaatctcc 1118
>PTA.sd.11699.C1 nseq=9
Length = 1940
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 124 aagaaactccataagaaat 142
||||||||||| |||||||
Sbjct: 907 aagaaactccacaagaaat 889
>PTA.sd.11372.C1 nseq=10
Length = 2552
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 163 gggacaacaagtgaa 177
|||||||||||||||
Sbjct: 2003 gggacaacaagtgaa 2017
>PTA.sd.10703.C1 nseq=2
Length = 900
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 115 agcttttctaagaaa 129
|||||||||||||||
Sbjct: 783 agcttttctaagaaa 769
>PTA.sd.10035.C1 nseq=6
Length = 1386
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 198 gtttgtctgatcctgatat 216
|||||||||||| ||||||
Sbjct: 254 gtttgtctgatcatgatat 272
>At5g41030.F
Length = 732
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 aagaaggagaatgaa 73
|||||||||||||||
Sbjct: 136 aagaaggagaatgaa 150
>At4g28970.F
Length = 2745
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 114 cagcttttctaagaa 128
|||||||||||||||
Sbjct: 1383 cagcttttctaagaa 1369
>At4g11530.F
Length = 1995
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 166 acaacaagtgaaacc 180
|||||||||||||||
Sbjct: 893 acaacaagtgaaacc 879
>At4g10690.F
Length = 4548
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 39 ttcacagtttcaaac 53
|||||||||||||||
Sbjct: 2244 ttcacagtttcaaac 2258
>At3g47310.F
Length = 2208
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 114 cagcttttctaagaa 128
|||||||||||||||
Sbjct: 1230 cagcttttctaagaa 1216
>At3g42880.F
Length = 1902
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 171 aagtgaaacctatga 185
|||||||||||||||
Sbjct: 1482 aagtgaaacctatga 1496
>At2g05010.F
Length = 2196
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 114 cagcttttctaagaa 128
|||||||||||||||
Sbjct: 1380 cagcttttctaagaa 1366
>At1g36090.F
Length = 1938
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 114 cagcttttctaagaa 128
|||||||||||||||
Sbjct: 1263 cagcttttctaagaa 1249
>At1g08610.F
Length = 1680
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 172 agtgaaacctatgaa 186
|||||||||||||||
Sbjct: 252 agtgaaacctatgaa 266
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 298
length of database: 39,126,732
effective HSP length: 16
effective length of query: 282
effective length of database: 38,700,540
effective search space: 10913552280
effective search space used: 10913552280
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)