BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_10044
(295 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.4492.C1 nseq=3 577 e-164
PTA.sd.9808.C1 nseq=2 34 0.55
PTA.sd.6763.C1 nseq=20 34 0.55
PTA.sd.11527.C1 nseq=2 34 0.55
At3g24000.F 34 0.55
PTA.sd.5063.C1 nseq=9 32 2.2
PTA.sd.3191.C1 nseq=19 32 2.2
PTA.sd.14546.C1 nseq=12 32 2.2
PTA.sd.14498.C1 nseq=2 32 2.2
PTA.sd.13443.C1 nseq=8 32 2.2
PTA.sd.12140.C1 nseq=3 32 2.2
At3g21090.F PTA.sd.9012.singlet 30 8.6
At3g20730.F PTA.sd.8986.singlet 30 8.6
PTA.sd.9888.C1 nseq=8 30 8.6
PTA.sd.9746.C1 nseq=4 30 8.6
>PTA.sd.4492.C1 nseq=3
Length = 1562
Score = 577 bits (291), Expect = e-164
Identities = 294/295 (99%)
Strand = Plus / Plus
Query: 1 ctatgtggttggaactcattgggttctcacacgggaaaactgcattcttgatgggtcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ctatgtggttggaactcattgggttctcacacgggaaaactgcattcttgatgggtcttt 805
Query: 61 tcgtggctgcatcttctcttggtggcttgtttggaggcaaaatgggagattttctgtcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tcgtggctgcatcttctcttggtggcttgtttggaggcaaaatgggagattttctgtcta 865
Query: 121 ctcgtcttcccaattccggaagaatcattctcgcgcagattagttcagcctcagcgatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ctcgtcttcccaattccggaagaatcattctcgcgcagattagttcagcctcagcgatcc 925
Query: 181 cgctcgctgcaattctcttgttggtcttaccagatgatccatctacagctgcaatccatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 cgctcgctgcaattctcttgttggtcttaccagatgatccatctacagctgcaatccatg 985
Query: 241 gtctgatcttagtcctattggggctatttgtttcttggaatgctcctgctaccaa 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 atctgatcttagtcctattggggctatttgtttcttggaatgctcctgctaccaa 1040
>PTA.sd.9808.C1 nseq=2
Length = 1655
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 67 ctgcatcttctcttggt 83
|||||||||||||||||
Sbjct: 120 ctgcatcttctcttggt 104
>PTA.sd.6763.C1 nseq=20
Length = 1652
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 264 ctatttgtttcttggaa 280
|||||||||||||||||
Sbjct: 1012 ctatttgtttcttggaa 996
>PTA.sd.11527.C1 nseq=2
Length = 709
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 72 tcttctcttggtggctt 88
|||||||||||||||||
Sbjct: 160 tcttctcttggtggctt 176
>At3g24000.F
Length = 1902
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 269 tgtttcttggaatgctc 285
|||||||||||||||||
Sbjct: 681 tgtttcttggaatgctc 697
>PTA.sd.5063.C1 nseq=9
Length = 878
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 122 tcgtcttcccaattcc 137
||||||||||||||||
Sbjct: 54 tcgtcttcccaattcc 69
>PTA.sd.3191.C1 nseq=19
Length = 3029
Score = 32.2 bits (16), Expect = 2.2
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 176 gatcccgctcgctgcaattctctt 199
||||||||| || |||||||||||
Sbjct: 2596 gatcccgctagcagcaattctctt 2619
>PTA.sd.14546.C1 nseq=12
Length = 1779
Score = 32.2 bits (16), Expect = 2.2
Identities = 31/36 (86%)
Strand = Plus / Plus
Query: 75 tctcttggtggcttgtttggaggcaaaatgggagat 110
|||||||| || ||||||||||| | |||||||||
Sbjct: 884 tctcttggaggtttgtttggaggatacatgggagat 919
>PTA.sd.14498.C1 nseq=2
Length = 1529
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 48 ttgatgggtcttttcg 63
||||||||||||||||
Sbjct: 388 ttgatgggtcttttcg 403
>PTA.sd.13443.C1 nseq=8
Length = 2265
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 207 ttaccagatgatccat 222
||||||||||||||||
Sbjct: 1908 ttaccagatgatccat 1923
>PTA.sd.12140.C1 nseq=3
Length = 2218
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 70 catcttctcttggtgg 85
||||||||||||||||
Sbjct: 1210 catcttctcttggtgg 1195
>At3g21090.F PTA.sd.9012.singlet
Length = 2043
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 45 ttcttgatgggtctt 59
|||||||||||||||
Sbjct: 1552 ttcttgatgggtctt 1566
>At3g20730.F PTA.sd.8986.singlet
Length = 1695
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 270 gtttcttggaatgct 284
|||||||||||||||
Sbjct: 538 gtttcttggaatgct 552
>PTA.sd.9888.C1 nseq=8
Length = 2111
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 154 cgcagattagttcagcctc 172
|||||||||||| ||||||
Sbjct: 1428 cgcagattagttgagcctc 1446
>PTA.sd.9746.C1 nseq=4
Length = 4174
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 267 tttgtttcttggaatgctc 285
||||||||||| |||||||
Sbjct: 2167 tttgtttcttgcaatgctc 2185
>PTA.sd.9718.C1 nseq=8
Length = 1651
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 203 ggtcttaccagatga 217
|||||||||||||||
Sbjct: 1039 ggtcttaccagatga 1053
>PTA.sd.9574.C1 nseq=2
Length = 586
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 194 tctcttgttggtctt 208
|||||||||||||||
Sbjct: 175 tctcttgttggtctt 161
>PTA.sd.9089.C1 nseq=4
Length = 2426
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 123 cgtcttcccaattcc 137
|||||||||||||||
Sbjct: 2166 cgtcttcccaattcc 2180
>PTA.sd.7499.C1 nseq=9
Length = 2628
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 180 ccgctcgctgcaatt 194
|||||||||||||||
Sbjct: 358 ccgctcgctgcaatt 344
>PTA.sd.7411.C1 nseq=10
Length = 1382
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 123 cgtcttcccaattcc 137
|||||||||||||||
Sbjct: 811 cgtcttcccaattcc 797
>PTA.sd.695.C1 nseq=9
Length = 1823
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 120 actcgtcttcccaat 134
|||||||||||||||
Sbjct: 1434 actcgtcttcccaat 1448
>PTA.sd.4745.C1 nseq=6
Length = 1264
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 122 tcgtcttcccaattc 136
|||||||||||||||
Sbjct: 50 tcgtcttcccaattc 64
>PTA.sd.4076.C1 nseq=3
Length = 3381
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 83 tggcttgtttggagg 97
|||||||||||||||
Sbjct: 263 tggcttgtttggagg 277
>PTA.sd.3705.C1 nseq=7
Length = 1435
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 100 aaatgggagattttc 114
|||||||||||||||
Sbjct: 1217 aaatgggagattttc 1231
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 100 aaatgggagattttc 114
|||||||||||||||
Sbjct: 1169 aaatgggagattttc 1183
>PTA.sd.3447.C1 nseq=23
Length = 1588
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 264 ctatttgtttcttgg 278
|||||||||||||||
Sbjct: 525 ctatttgtttcttgg 539
>PTA.sd.3070.C1 nseq=18
Length = 956
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 157 agattagttcagcctcagc 175
||||||||||||| |||||
Sbjct: 201 agattagttcagcatcagc 219
>PTA.sd.2750.C1 nseq=20
Length = 2355
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 45 ttcttgatgggtctt 59
|||||||||||||||
Sbjct: 1651 ttcttgatgggtctt 1665
>PTA.sd.18078.C1 nseq=5
Length = 1718
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 264 ctatttgtttcttgg 278
|||||||||||||||
Sbjct: 913 ctatttgtttcttgg 927
>PTA.sd.17634.C1 nseq=3
Length = 771
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 213 gatgatccatctaca 227
|||||||||||||||
Sbjct: 259 gatgatccatctaca 273
>PTA.sd.16731.C1 nseq=3
Length = 1736
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 4 tgtggttggaactca 18
|||||||||||||||
Sbjct: 1097 tgtggttggaactca 1111
>PTA.sd.15347.C1 nseq=2
Length = 4108
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 181 cgctcgctgcaattc 195
|||||||||||||||
Sbjct: 3587 cgctcgctgcaattc 3573
>PTA.sd.12337.C1 nseq=7
Length = 1343
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 267 tttgtttcttggaat 281
|||||||||||||||
Sbjct: 1175 tttgtttcttggaat 1161
>PTA.sd.11334.C1 nseq=8
Length = 878
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 99 aaaatgggagatttt 113
|||||||||||||||
Sbjct: 798 aaaatgggagatttt 812
>PTA.sd.11176.C1 nseq=3
Length = 1436
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 253 tcctattggggctat 267
|||||||||||||||
Sbjct: 404 tcctattggggctat 418
>PTA.sd.10921.C1 nseq=16
Length = 2372
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 48 ttgatgggtcttttc 62
|||||||||||||||
Sbjct: 137 ttgatgggtcttttc 151
>At5g55260.F
Length = 918
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 265 tatttgtttcttgga 279
|||||||||||||||
Sbjct: 220 tatttgtttcttgga 234
>At5g22910.F
Length = 2403
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 194 tctcttgttggtctt 208
|||||||||||||||
Sbjct: 405 tctcttgttggtctt 391
>At3g51690.F
Length = 1125
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 235 tccatggtctgatct 249
|||||||||||||||
Sbjct: 55 tccatggtctgatct 41
>At1g31430.F
Length = 1713
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 268 ttgtttcttggaatg 282
|||||||||||||||
Sbjct: 335 ttgtttcttggaatg 349
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 295
length of database: 39,126,732
effective HSP length: 16
effective length of query: 279
effective length of database: 38,700,540
effective search space: 10797450660
effective search space used: 10797450660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)