BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_09774
(299 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01570.F 593 e-169
PTA.sd.6780.C1 nseq=3 36 0.14
PTA.sd.16155.C1 nseq=3 36 0.14
PTA.sd.12464.C1 nseq=8 34 0.56
PTA.sd.4610.C2 nseq=7 32 2.2
PTA.sd.2230.C1 nseq=23 32 2.2
PTA.sd.16777.C1 nseq=3 32 2.2
PTA.sd.13954.C1 nseq=33 32 2.2
PTA.sd.8347.C1 nseq=7 30 8.7
PTA.sd.8301.C1 nseq=148 30 8.7
PTA.sd.8071.C1 nseq=12 30 8.7
PTA.sd.7939.C1 nseq=10 30 8.7
PTA.sd.6286.C1 nseq=25 30 8.7
PTA.sd.5740.C1 nseq=3 30 8.7
PTA.sd.3360.C1 nseq=10 30 8.7
>At1g01570.F
Length = 1437
Score = 593 bits (299), Expect = e-169
Identities = 299/299 (100%)
Strand = Plus / Plus
Query: 1 ccagatcatacgtggcgtgttgtcagctagagagatggtgatccccacgcgcacgttcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 ccagatcatacgtggcgtgttgtcagctagagagatggtgatccccacgcgcacgttcat 1067
Query: 61 cgattggtacaaacaggcagacgaaagaagctatgcttttaacacgcgtcctatcgccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 cgattggtacaaacaggcagacgaaagaagctatgcttttaacacgcgtcctatcgccaa 1127
Query: 121 aagcgcgtgtcagcgtccgcgagtgtattacctgtccaacgcgcttcctgacttggcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 aagcgcgtgtcagcgtccgcgagtgtattacctgtccaacgcgcttcctgacttggcttt 1187
Query: 181 gcgtagaactgctagtgaatacgtgagatggtacgacatgtgggagcctgaatgtgactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1188 gcgtagaactgctagtgaatacgtgagatggtacgacatgtgggagcctgaatgtgactg 1247
Query: 241 ggatatgtcggatccttcggaatttgaacgggtcattgtttataagaaacccgacccgg 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1248 ggatatgtcggatccttcggaatttgaacgggtcattgtttataagaaacccgacccgg 1306
>PTA.sd.6780.C1 nseq=3
Length = 1601
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 16 cgtgttgtcagctagaga 33
||||||||||||||||||
Sbjct: 468 cgtgttgtcagctagaga 451
>PTA.sd.16155.C1 nseq=3
Length = 1669
Score = 36.2 bits (18), Expect = 0.14
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 272 gtcattgtttataagaaacccgaccc 297
||||||||||| |||||||| |||||
Sbjct: 1432 gtcattgtttacaagaaaccggaccc 1457
>PTA.sd.12464.C1 nseq=8
Length = 1779
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 283 taagaaacccgacccgg 299
|||||||||||||||||
Sbjct: 42 taagaaacccgacccgg 58
>PTA.sd.4610.C2 nseq=7
Length = 1551
Score = 32.2 bits (16), Expect = 2.2
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 266 gaacgggtcattgtttataagaaa 289
|||| ||||||||||| |||||||
Sbjct: 898 gaactggtcattgtttctaagaaa 875
>PTA.sd.2230.C1 nseq=23
Length = 1852
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 46 cacgcgcacgttcatc 61
||||||||||||||||
Sbjct: 1106 cacgcgcacgttcatc 1091
>PTA.sd.16777.C1 nseq=3
Length = 1644
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 280 ttataagaaacccgac 295
||||||||||||||||
Sbjct: 835 ttataagaaacccgac 820
>PTA.sd.13954.C1 nseq=33
Length = 782
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 34 gatggtgatccccacg 49
||||||||||||||||
Sbjct: 202 gatggtgatccccacg 187
>PTA.sd.8347.C1 nseq=7
Length = 2187
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 3 agatcatacgtggcg 17
|||||||||||||||
Sbjct: 1566 agatcatacgtggcg 1580
>PTA.sd.8301.C1 nseq=148
Length = 1617
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 84 aaagaagctatgctt 98
|||||||||||||||
Sbjct: 1362 aaagaagctatgctt 1376
>PTA.sd.8071.C1 nseq=12
Length = 2131
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 83 gaaagaagctatgct 97
|||||||||||||||
Sbjct: 1943 gaaagaagctatgct 1957
>PTA.sd.7939.C1 nseq=10
Length = 2582
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 194 agtgaatacgtgaga 208
|||||||||||||||
Sbjct: 2241 agtgaatacgtgaga 2255
>PTA.sd.6286.C1 nseq=25
Length = 1013
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 79 agacgaaagaagcta 93
|||||||||||||||
Sbjct: 879 agacgaaagaagcta 865
>PTA.sd.5740.C1 nseq=3
Length = 7264
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 177 ctttgcgtagaactg 191
|||||||||||||||
Sbjct: 1925 ctttgcgtagaactg 1911
>PTA.sd.3360.C1 nseq=10
Length = 2714
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 284 aagaaacccgacccg 298
|||||||||||||||
Sbjct: 48 aagaaacccgacccg 62
>PTA.sd.3122.C1 nseq=8
Length = 1950
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 86 agaagctatgcttttaaca 104
|||||||||||||| ||||
Sbjct: 879 agaagctatgctttaaaca 861
>PTA.sd.2499.C1 nseq=6
Length = 1923
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 18 tgttgtcagctagag 32
|||||||||||||||
Sbjct: 443 tgttgtcagctagag 457
>PTA.sd.13706.C1 nseq=4
Length = 3529
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 28 tagagagatggtgat 42
|||||||||||||||
Sbjct: 3255 tagagagatggtgat 3241
>PTA.sd.10837.C1 nseq=7
Length = 829
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 285 agaaacccgacccgg 299
|||||||||||||||
Sbjct: 622 agaaacccgacccgg 608
>At3g05870.F
Length = 255
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 239 tgggatatgtcggat 253
|||||||||||||||
Sbjct: 69 tgggatatgtcggat 83
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 299
length of database: 39,126,732
effective HSP length: 16
effective length of query: 283
effective length of database: 38,700,540
effective search space: 10952252820
effective search space used: 10952252820
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)