BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_09760
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01590.F 589 e-168
PTA.sd.1676.C1 nseq=6 103 7e-22
PTA.sd.39.C1 nseq=3 46 1e-04
PTA.sd.8687.C1 nseq=2 32 2.2
PTA.sd.4944.C1 nseq=2 32 2.2
PTA.sd.4401.C1 nseq=8 32 2.2
PTA.sd.17233.C1 nseq=6 32 2.2
PTA.sd.17150.C1 nseq=7 32 2.2
PTA.sd.13552.C1 nseq=6 32 2.2
PTA.sd.12825.C1 nseq=31 32 2.2
PTA.sd.12386.C1 nseq=4 32 2.2
PTA.sd.12090.C1 nseq=3 32 2.2
PTA.sd.1207.C1 nseq=2 32 2.2
PTA.sd.11731.C1 nseq=4 32 2.2
At4g07610.F 32 2.2
>At1g01590.F
Length = 2115
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 atgtaaaatccccaagatgaccctgatctgcgcgttcaaaaactcttccgacctatccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 atgtaaaatccccaagatgaccctgatctgcgcgttcaaaaactcttccgacctatccat 1451
Query: 61 gctcgacctaattctacccacctctggtctcaccaccgacatggcctcgtttgtagatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1452 gctcgacctaattctacccacctctggtctcaccaccgacatggcctcgtttgtagatat 1511
Query: 121 ccagatcaaagccttcgtcacccgagaagagaaaacatcagtaaaagaatcaactcacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1512 ccagatcaaagccttcgtcacccgagaagagaaaacatcagtaaaagaatcaactcacaa 1571
Query: 181 taggaatatcatcaaaacccgacatttcaaaccaaacgtctcagaccagcccatctcacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1572 taggaatatcatcaaaacccgacatttcaaaccaaacgtctcagaccagcccatctcacc 1631
Query: 241 aatcctcgggcccaactcttggctctgtcttgcagccatcctctcttcttccttcat 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1632 aatcctcgggcccaactcttggctctgtcttgcagccatcctctcttcttccttcat 1688
>PTA.sd.1676.C1 nseq=6
Length = 1607
Score = 103 bits (52), Expect = 7e-22
Identities = 103/120 (85%)
Strand = Plus / Plus
Query: 178 caataggaatatcatcaaaacccgacatttcaaaccaaacgtctcagaccagcccatctc 237
||||| ||||||||||||||||| |||||||||| | ||||||||||| ||||||||
Sbjct: 938 caatatgaatatcatcaaaaccctcagtttcaaaccatatgtctcagaccaacccatctc 997
Query: 238 accaatcctcgggcccaactcttggctctgtcttgcagccatcctctcttcttccttcat 297
|||||||||||| || ||||| ||||| || || || |||||||||||||||| |||||
Sbjct: 998 accaatcctcggaccgaactcctggctgtggctggccaccatcctctcttcttcattcat 1057
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 105 cctcgtttgtagatatccagatcaaagccttcgtcacccgaga 147
|||| ||| |||||||||||||||||||||| |||||||||||
Sbjct: 880 cctcctttatagatatccagatcaaagcctttgtcacccgaga 922
Score = 48.1 bits (24), Expect = 4e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 29 tgcgcgttcaaaaactcttccgacctatccatgctcgacctaat 72
||||||||||| || ||||||||||| || |||||| |||||||
Sbjct: 813 tgcgcgttcaagaattcttccgacctctcaatgctcaacctaat 856
>PTA.sd.39.C1 nseq=3
Length = 2409
Score = 46.1 bits (23), Expect = 1e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 206 ttcaaaccaaacgtctcagaccagcccatctcaccaatcctcgggcccaactcttggct 264
||||||||||| | |||||||| |||||||| |||||||||| || ||||| |||||
Sbjct: 1611 ttcaaaccaaagctttcagaccaatccatctcatcaatcctcggaccaaactcatggct 1669
>PTA.sd.8687.C1 nseq=2
Length = 2049
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 80 acctctggtctcacca 95
||||||||||||||||
Sbjct: 569 acctctggtctcacca 584
>PTA.sd.4944.C1 nseq=2
Length = 1457
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 278 atcctctcttcttccttcat 297
||||||||||| ||||||||
Sbjct: 473 atcctctcttcatccttcat 454
>PTA.sd.4401.C1 nseq=8
Length = 3935
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 116 gatatccagatcaaag 131
||||||||||||||||
Sbjct: 590 gatatccagatcaaag 575
>PTA.sd.17233.C1 nseq=6
Length = 1678
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 189 tcatcaaaacccgaca 204
||||||||||||||||
Sbjct: 509 tcatcaaaacccgaca 524
>PTA.sd.17150.C1 nseq=7
Length = 3224
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 281 ctctcttcttccttca 296
||||||||||||||||
Sbjct: 16 ctctcttcttccttca 31
>PTA.sd.13552.C1 nseq=6
Length = 862
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 280 cctctcttcttccttc 295
||||||||||||||||
Sbjct: 445 cctctcttcttccttc 430
>PTA.sd.12825.C1 nseq=31
Length = 1156
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 99 acatggcctcgtttgt 114
||||||||||||||||
Sbjct: 526 acatggcctcgtttgt 511
>PTA.sd.12386.C1 nseq=4
Length = 694
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 282 tctcttcttccttcat 297
||||||||||||||||
Sbjct: 502 tctcttcttccttcat 487
>PTA.sd.12090.C1 nseq=3
Length = 3678
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 5 aaaatccccaagatga 20
||||||||||||||||
Sbjct: 1633 aaaatccccaagatga 1648
>PTA.sd.1207.C1 nseq=2
Length = 2859
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 179 aataggaatatcatca 194
||||||||||||||||
Sbjct: 1483 aataggaatatcatca 1498
>PTA.sd.11731.C1 nseq=4
Length = 1095
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 282 tctcttcttccttcat 297
||||||||||||||||
Sbjct: 944 tctcttcttccttcat 929
>At4g07610.F
Length = 831
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 154 aacatcagtaaaagaa 169
||||||||||||||||
Sbjct: 403 aacatcagtaaaagaa 418
>At1g78480.F
Length = 609
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 280 cctctcttcttccttc 295
||||||||||||||||
Sbjct: 294 cctctcttcttccttc 309
>At1g57670.F
Length = 1164
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 282 tctcttcttccttcat 297
||||||||||||||||
Sbjct: 680 tctcttcttccttcat 665
>At1g58210.F PTA.sd.3137.singlet
Length = 3588
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 182 aggaatatcatcaaa 196
|||||||||||||||
Sbjct: 519 aggaatatcatcaaa 505
>At1g47650.F PTA.sd.2512.singlet
Length = 4230
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 173 actcacaataggaatatcatcaa 195
|||| |||||| |||||||||||
Sbjct: 2808 actcgcaatagcaatatcatcaa 2786
>PTA.sd.9696.C1 nseq=2
Length = 3531
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 273 cagccatcctctctt 287
|||||||||||||||
Sbjct: 1051 cagccatcctctctt 1037
>PTA.sd.9651.C1 nseq=7
Length = 1713
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 84 ctggtctcaccaccg 98
|||||||||||||||
Sbjct: 1293 ctggtctcaccaccg 1279
>PTA.sd.9560.C1 nseq=6
Length = 2208
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 155 acatcagtaaaagaa 169
|||||||||||||||
Sbjct: 1430 acatcagtaaaagaa 1444
>PTA.sd.8601.C1 nseq=14
Length = 1024
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 81 cctctggtctcacca 95
|||||||||||||||
Sbjct: 132 cctctggtctcacca 118
>PTA.sd.8140.C1 nseq=3
Length = 4115
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 253 caactcttggctctg 267
|||||||||||||||
Sbjct: 193 caactcttggctctg 207
>PTA.sd.7844.C1 nseq=5
Length = 2591
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 198 cccgacatttcaaac 212
|||||||||||||||
Sbjct: 430 cccgacatttcaaac 444
>PTA.sd.7598.C1 nseq=24
Length = 1045
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 270 ttgcagccatcctct 284
|||||||||||||||
Sbjct: 441 ttgcagccatcctct 455
>PTA.sd.714.C1 nseq=6
Length = 1272
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 145 agaagagaaaacatcagtaaaag 167
||||||||||| |||||| ||||
Sbjct: 670 agaagagaaaagatcagtgaaag 692
>PTA.sd.6450.C1 nseq=7
Length = 2393
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 257 tcttggctctgtctt 271
|||||||||||||||
Sbjct: 2047 tcttggctctgtctt 2061
>PTA.sd.6368.C1 nseq=7
Length = 1012
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 274 agccatcctctcttc 288
|||||||||||||||
Sbjct: 118 agccatcctctcttc 132
>PTA.sd.5914.C1 nseq=4
Length = 1669
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 tctggtctcaccacc 97
|||||||||||||||
Sbjct: 995 tctggtctcaccacc 981
>PTA.sd.5767.C1 nseq=77
Length = 3488
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 278 atcctctcttcttcc 292
|||||||||||||||
Sbjct: 124 atcctctcttcttcc 138
>PTA.sd.5504.C1 nseq=6
Length = 1480
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 163 aaaagaatcaactca 177
|||||||||||||||
Sbjct: 645 aaaagaatcaactca 631
>PTA.sd.5250.C1 nseq=9
Length = 1481
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 143 cgagaagagaaaacatcag 161
||||||||||||| |||||
Sbjct: 726 cgagaagagaaaagatcag 744
>PTA.sd.5135.C1 nseq=19
Length = 1918
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 acccgagaagagaaa 154
|||||||||||||||
Sbjct: 1452 acccgagaagagaaa 1438
>PTA.sd.4585.C1 nseq=6
Length = 2470
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 281 ctctcttcttccttc 295
|||||||||||||||
Sbjct: 416 ctctcttcttccttc 430
>PTA.sd.4035.C1 nseq=2
Length = 3784
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 148 agagaaaacatcagt 162
|||||||||||||||
Sbjct: 3614 agagaaaacatcagt 3600
>PTA.sd.2126.C1 nseq=3
Length = 2037
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 275 gccatcctctcttcttcct 293
||||| |||||||||||||
Sbjct: 1442 gccatgctctcttcttcct 1424
>PTA.sd.1999.C1 nseq=6
Length = 5481
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 280 cctctcttcttcctt 294
|||||||||||||||
Sbjct: 1386 cctctcttcttcctt 1372
>PTA.sd.1844.C1 nseq=5
Length = 1627
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 145 agaagagaaaacatcagtaaaag 167
||||||||||| |||||| ||||
Sbjct: 832 agaagagaaaaaatcagtgaaag 854
>PTA.sd.17621.C1 nseq=3
Length = 2212
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 182 aggaatatcatcaaaaccc 200
||||| |||||||||||||
Sbjct: 1803 aggaacatcatcaaaaccc 1785
>PTA.sd.17135.C1 nseq=11
Length = 4185
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 180 ataggaatatcatca 194
|||||||||||||||
Sbjct: 2918 ataggaatatcatca 2904
>PTA.sd.16912.C1 nseq=9
Length = 2625
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 283 ctcttcttccttcat 297
|||||||||||||||
Sbjct: 897 ctcttcttccttcat 883
>PTA.sd.16383.C1 nseq=5
Length = 1721
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 280 cctctcttcttcctt 294
|||||||||||||||
Sbjct: 653 cctctcttcttcctt 639
>PTA.sd.1591.C1 nseq=8
Length = 2755
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 280 cctctcttcttcctt 294
|||||||||||||||
Sbjct: 210 cctctcttcttcctt 196
>PTA.sd.15384.C1 nseq=5
Length = 536
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 15 agatgaccctgatct 29
|||||||||||||||
Sbjct: 283 agatgaccctgatct 297
>PTA.sd.15003.C1 nseq=11
Length = 1037
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 270 ttgcagccatcctct 284
|||||||||||||||
Sbjct: 431 ttgcagccatcctct 445
>PTA.sd.14239.C1 nseq=6
Length = 1555
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 274 agccatcctctcttc 288
|||||||||||||||
Sbjct: 175 agccatcctctcttc 189
>PTA.sd.14237.C1 nseq=5
Length = 1470
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 274 agccatcctctcttc 288
|||||||||||||||
Sbjct: 172 agccatcctctcttc 186
>PTA.sd.14224.C1 nseq=51
Length = 1699
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 277 catcctctcttcttc 291
|||||||||||||||
Sbjct: 23 catcctctcttcttc 37
>PTA.sd.13895.C1 nseq=3
Length = 1188
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 146 gaagagaaaacatca 160
|||||||||||||||
Sbjct: 536 gaagagaaaacatca 550
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)