BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_08939
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
orF136a.F 589 e-168
At2g07692.F 589 e-168
PTA.sd.17902.C1 nseq=2 36 0.14
PTA.sd.17203.C1 nseq=9 36 0.14
At1g09170.F 34 0.55
PTA.sd.9958.C1 nseq=8 32 2.2
PTA.sd.8417.C1 nseq=8 32 2.2
PTA.sd.4469.C1 nseq=5 32 2.2
PTA.sd.12291.C1 nseq=18 32 2.2
At5g35140.F 32 2.2
At1g47650.F PTA.sd.2512.singlet 30 8.6
PTA.sd.9479.C1 nseq=6 30 8.6
PTA.sd.9281.C1 nseq=2 30 8.6
PTA.sd.9278.C1 nseq=2 30 8.6
PTA.sd.9277.C1 nseq=2 30 8.6
>orF136a.F
Length = 411
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 gttaatcctaaatgcagccgtgatcttatatacgatgataccaccagacgcgcattcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 gttaatcctaaatgcagccgtgatcttatatacgatgataccaccagacgcgcattcctt 74
Query: 61 gggatcagaaggaagagttgtcaacgggaactggcgagacacttctgacgttaaagaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 gggatcagaaggaagagttgtcaacgggaactggcgagacacttctgacgttaaagaagg 134
Query: 121 aagtcttccccgggaggtaactaaacaagttaatggaagtctgtcttcccgaactaagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 aagtcttccccgggaggtaactaaacaagttaatggaagtctgtcttcccgaactaagca 194
Query: 181 agttaatgagttcagcaagcacacaaggtttcttgtagacataagtttcagttgttgttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 agttaatgagttcagcaagcacacaaggtttcttgtagacataagtttcagttgttgttc 254
Query: 241 cctaataaatagatctctttgggaatcagcacagaaagatgagcttagtgattcctt 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cctaataaatagatctctttgggaatcagcacagaaagatgagcttagtgattcctt 311
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 283 gcttagtgattcctt 297
|||||||||||||||
Sbjct: 386 gcttagtgattcctt 400
>At2g07692.F
Length = 411
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 gttaatcctaaatgcagccgtgatcttatatacgatgataccaccagacgcgcattcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 gttaatcctaaatgcagccgtgatcttatatacgatgataccaccagacgcgcattcctt 74
Query: 61 gggatcagaaggaagagttgtcaacgggaactggcgagacacttctgacgttaaagaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 gggatcagaaggaagagttgtcaacgggaactggcgagacacttctgacgttaaagaagg 134
Query: 121 aagtcttccccgggaggtaactaaacaagttaatggaagtctgtcttcccgaactaagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 aagtcttccccgggaggtaactaaacaagttaatggaagtctgtcttcccgaactaagca 194
Query: 181 agttaatgagttcagcaagcacacaaggtttcttgtagacataagtttcagttgttgttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 agttaatgagttcagcaagcacacaaggtttcttgtagacataagtttcagttgttgttc 254
Query: 241 cctaataaatagatctctttgggaatcagcacagaaagatgagcttagtgattcctt 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cctaataaatagatctctttgggaatcagcacagaaagatgagcttagtgattcctt 311
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 283 gcttagtgattcctt 297
|||||||||||||||
Sbjct: 386 gcttagtgattcctt 400
>PTA.sd.17902.C1 nseq=2
Length = 1289
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 67 agaaggaagagttgtcaa 84
||||||||||||||||||
Sbjct: 997 agaaggaagagttgtcaa 980
>PTA.sd.17203.C1 nseq=9
Length = 2242
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 67 agaaggaagagttgtcaa 84
||||||||||||||||||
Sbjct: 1081 agaaggaagagttgtcaa 1098
>At1g09170.F
Length = 3141
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 98 gacacttctgacgttaaagaa 118
||||||||||| |||||||||
Sbjct: 2263 gacacttctgaggttaaagaa 2283
>PTA.sd.9958.C1 nseq=8
Length = 1910
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 268 agcacagaaagatgag 283
||||||||||||||||
Sbjct: 1294 agcacagaaagatgag 1309
>PTA.sd.8417.C1 nseq=8
Length = 1968
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 216 tagacataagtttcag 231
||||||||||||||||
Sbjct: 559 tagacataagtttcag 544
>PTA.sd.4469.C1 nseq=5
Length = 2093
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 262 ggaatcagcacagaaa 277
||||||||||||||||
Sbjct: 522 ggaatcagcacagaaa 507
>PTA.sd.12291.C1 nseq=18
Length = 1066
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 115 agaaggaagtcttccc 130
||||||||||||||||
Sbjct: 565 agaaggaagtcttccc 550
>At5g35140.F
Length = 954
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 245 ataaatagatctctttggga 264
||||||||||| ||||||||
Sbjct: 859 ataaatagatcactttggga 878
>At1g47650.F PTA.sd.2512.singlet
Length = 4230
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 217 agacataagtttcag 231
|||||||||||||||
Sbjct: 2041 agacataagtttcag 2055
>PTA.sd.9479.C1 nseq=6
Length = 1772
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 250 tagatctctttgggaatca 268
|||| ||||||||||||||
Sbjct: 388 tagacctctttgggaatca 406
>PTA.sd.9281.C1 nseq=2
Length = 1064
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 226 tttcagttgttgttcccta 244
|||| ||||||||||||||
Sbjct: 362 tttccgttgttgttcccta 344
>PTA.sd.9278.C1 nseq=2
Length = 5747
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 264 aatcagcacagaaag 278
|||||||||||||||
Sbjct: 1843 aatcagcacagaaag 1857
>PTA.sd.9277.C1 nseq=2
Length = 5527
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 264 aatcagcacagaaag 278
|||||||||||||||
Sbjct: 1843 aatcagcacagaaag 1857
>PTA.sd.717.C1 nseq=11
Length = 1718
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 225 gtttcagttgttgtt 239
|||||||||||||||
Sbjct: 741 gtttcagttgttgtt 755
>PTA.sd.6795.C1 nseq=51
Length = 1535
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 22 gatcttatatacgat 36
|||||||||||||||
Sbjct: 576 gatcttatatacgat 590
>PTA.sd.6297.C1 nseq=3
Length = 1770
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 272 cagaaagatgagctt 286
|||||||||||||||
Sbjct: 82 cagaaagatgagctt 96
>PTA.sd.3870.C1 nseq=6
Length = 982
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 275 aaagatgagcttagt 289
|||||||||||||||
Sbjct: 70 aaagatgagcttagt 84
>PTA.sd.368.C1 nseq=3
Length = 2352
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 245 ataaatagatctctt 259
|||||||||||||||
Sbjct: 1338 ataaatagatctctt 1324
>PTA.sd.3071.C1 nseq=3
Length = 703
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 33 cgatgataccaccag 47
|||||||||||||||
Sbjct: 135 cgatgataccaccag 121
>PTA.sd.3047.C1 nseq=6
Length = 1153
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 223 aagtttcagttgttg 237
|||||||||||||||
Sbjct: 537 aagtttcagttgttg 523
>PTA.sd.2280.C1 nseq=6
Length = 1606
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 90 actggcgagacactt 104
|||||||||||||||
Sbjct: 1386 actggcgagacactt 1400
>PTA.sd.17603.C1 nseq=44
Length = 3553
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 184 taatgagttcagcaa 198
|||||||||||||||
Sbjct: 1801 taatgagttcagcaa 1787
>PTA.sd.17536.C1 nseq=3
Length = 1308
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 212 cttgtagacataagt 226
|||||||||||||||
Sbjct: 1214 cttgtagacataagt 1228
>PTA.sd.17360.C1 nseq=4
Length = 5665
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 188 gagttcagcaagcac 202
|||||||||||||||
Sbjct: 2763 gagttcagcaagcac 2777
>PTA.sd.17357.C1 nseq=9
Length = 1965
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 273 agaaagatgagctta 287
|||||||||||||||
Sbjct: 1744 agaaagatgagctta 1758
>PTA.sd.15415.C1 nseq=5
Length = 1466
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 216 tagacataagtttca 230
|||||||||||||||
Sbjct: 893 tagacataagtttca 907
>PTA.sd.14183.C1 nseq=7
Length = 1005
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 203 acaaggtttcttgta 217
|||||||||||||||
Sbjct: 916 acaaggtttcttgta 930
>PTA.sd.13871.C1 nseq=2
Length = 1884
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 148 agttaatggaagtct 162
|||||||||||||||
Sbjct: 150 agttaatggaagtct 164
>PTA.sd.13434.C1 nseq=69
Length = 2910
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 265 atcagcacagaaagatgag 283
|||||||||||| ||||||
Sbjct: 1713 atcagcacagaatgatgag 1695
>PTA.sd.1253.C1 nseq=8
Length = 853
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 62 ggatcagaaggaaga 76
|||||||||||||||
Sbjct: 325 ggatcagaaggaaga 311
>PTA.sd.12000.C1 nseq=5
Length = 896
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 247 aaatagatctctttg 261
|||||||||||||||
Sbjct: 891 aaatagatctctttg 877
>PTA.sd.11039.C1 nseq=5
Length = 1760
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 117 aaggaagtcttcccc 131
|||||||||||||||
Sbjct: 1144 aaggaagtcttcccc 1130
>PTA.sd.1021.C1 nseq=5
Length = 818
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 212 cttgtagacataagtttca 230
|||||| ||||||||||||
Sbjct: 507 cttgtaaacataagtttca 525
>PTA.sd.10185.C1 nseq=12
Length = 1694
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 247 aaatagatctctttg 261
|||||||||||||||
Sbjct: 1611 aaatagatctctttg 1625
>At5g59060.F
Length = 333
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 278 gatgagcttagtgat 292
|||||||||||||||
Sbjct: 141 gatgagcttagtgat 127
>At5g55870.F
Length = 675
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 144 aacaagttaatggaa 158
|||||||||||||||
Sbjct: 584 aacaagttaatggaa 570
>At5g41510.F
Length = 1203
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 198 agcacacaaggtttc 212
|||||||||||||||
Sbjct: 664 agcacacaaggtttc 678
>At5g27550.F
Length = 1278
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 83 aacgggaactggcgagaca 101
||||||||||||| |||||
Sbjct: 369 aacgggaactggcaagaca 387
>At5g06905.F
Length = 1587
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 252 gatctctttgggaat 266
|||||||||||||||
Sbjct: 624 gatctctttgggaat 610
>At4g24165.F
Length = 3015
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 85 cgggaactggcgaga 99
|||||||||||||||
Sbjct: 1039 cgggaactggcgaga 1053
>At4g14180.F
Length = 3807
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 62 ggatcagaaggaaga 76
|||||||||||||||
Sbjct: 1871 ggatcagaaggaaga 1857
>At2g35340.F
Length = 3264
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 151 taatggaagtctgtc 165
|||||||||||||||
Sbjct: 512 taatggaagtctgtc 498
>At2g16000.F
Length = 4365
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 217 agacataagtttcag 231
|||||||||||||||
Sbjct: 2380 agacataagtttcag 2394
>At2g15920.F
Length = 3303
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 217 agacataagtttcag 231
|||||||||||||||
Sbjct: 1593 agacataagtttcag 1607
>At2g15870.F
Length = 3795
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 217 agacataagtttcag 231
|||||||||||||||
Sbjct: 1957 agacataagtttcag 1971
>At2g04515.F
Length = 591
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 67 agaaggaagagttgt 81
|||||||||||||||
Sbjct: 363 agaaggaagagttgt 377
>At1g51290.F
Length = 1134
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 247 aaatagatctctttg 261
|||||||||||||||
Sbjct: 1016 aaatagatctctttg 1030
>At1g49920.F
Length = 2358
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 65 tcagaaggaagagtt 79
|||||||||||||||
Sbjct: 1509 tcagaaggaagagtt 1523
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)