BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_08922
(291 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24030.F 577 e-164
PTA.sd.9625.C1 nseq=3 34 0.54
PTA.sd.6542.C1 nseq=22 34 0.54
PTA.sd.17240.C1 nseq=12 34 0.54
PTA.sd.11565.C1 nseq=7 34 0.54
At4g04240.F 34 0.54
At1g21520.F PTA.sd.1573.singlet 32 2.1
PTA.sd.3011.C1 nseq=6 32 2.1
PTA.sd.17274.C1 nseq=21 32 2.1
PTA.sd.13258.C1 nseq=4 32 2.1
PTA.sd.1047.C1 nseq=15 32 2.1
At2g06160.F 32 2.1
PTA.sd.7602.C1 nseq=5 30 8.5
PTA.sd.6992.C1 nseq=18 30 8.5
PTA.sd.6841.C1 nseq=13 30 8.5
>At4g24030.F
Length = 387
Score = 577 bits (291), Expect = e-164
Identities = 291/291 (100%)
Strand = Plus / Plus
Query: 1 agaggtggagagattgacgcaggcgcagcgttcgagggaggtgaagaaagcggatattac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 agaggtggagagattgacgcaggcgcagcgttcgagggaggtgaagaaagcggatattac 129
Query: 61 ggttgcgctgatccagctagcggcgtggtcgatcttttccatggaagtcgtcgtgctaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ggttgcgctgatccagctagcggcgtggtcgatcttttccatggaagtcgtcgtgctaac 189
Query: 121 gttggaggtgatgctgatgcttttgtccatggcttctggatccgattagcgtttcagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gttggaggtgatgctgatgcttttgtccatggcttctggatccgattagcgtttcagaag 249
Query: 181 acgaccaagaaaagaagatcgtgggatggatcaatatattacaggaataacgattttgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 acgaccaagaaaagaagatcgtgggatggatcaatatattacaggaataacgattttgaa 309
Query: 241 ccgagaaaatgtaaatataagtatataaaacgattattgtttgtcagaaat 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ccgagaaaatgtaaatataagtatataaaacgattattgtttgtcagaaat 360
>PTA.sd.9625.C1 nseq=3
Length = 2995
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tgaagaaagcggatatt 58
|||||||||||||||||
Sbjct: 1796 tgaagaaagcggatatt 1812
>PTA.sd.6542.C1 nseq=22
Length = 4278
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 138 tgcttttgtccatggct 154
|||||||||||||||||
Sbjct: 298 tgcttttgtccatggct 314
>PTA.sd.17240.C1 nseq=12
Length = 1557
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1 agaggtggagagattga 17
|||||||||||||||||
Sbjct: 56 agaggtggagagattga 40
>PTA.sd.11565.C1 nseq=7
Length = 559
Score = 34.2 bits (17), Expect = 0.54
Identities = 26/29 (89%)
Strand = Plus / Minus
Query: 129 tgatgctgatgcttttgtccatggcttct 157
|||||||| |||| || ||||||||||||
Sbjct: 130 tgatgctgctgctgttatccatggcttct 102
>At4g04240.F
Length = 1005
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 138 tgcttttgtccatggct 154
|||||||||||||||||
Sbjct: 691 tgcttttgtccatggct 675
>At1g21520.F PTA.sd.1573.singlet
Length = 366
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 34 gagggaggtgaagaaa 49
||||||||||||||||
Sbjct: 39 gagggaggtgaagaaa 54
>PTA.sd.3011.C1 nseq=6
Length = 819
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 175 cagaagacgaccaaga 190
||||||||||||||||
Sbjct: 355 cagaagacgaccaaga 340
>PTA.sd.17274.C1 nseq=21
Length = 3226
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 42 tgaagaaagcggatat 57
||||||||||||||||
Sbjct: 1837 tgaagaaagcggatat 1852
>PTA.sd.13258.C1 nseq=4
Length = 2415
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 34 gagggaggtgaagaaagcgg 53
||||||||||||||| ||||
Sbjct: 380 gagggaggtgaagaaggcgg 361
>PTA.sd.1047.C1 nseq=15
Length = 1315
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 184 accaagaaaagaagat 199
||||||||||||||||
Sbjct: 806 accaagaaaagaagat 821
>At2g06160.F
Length = 2253
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 132 tgctgatgcttttgtc 147
||||||||||||||||
Sbjct: 685 tgctgatgcttttgtc 670
>PTA.sd.7602.C1 nseq=5
Length = 977
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 131 atgctgatgcttttg 145
|||||||||||||||
Sbjct: 636 atgctgatgcttttg 650
>PTA.sd.6992.C1 nseq=18
Length = 3343
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 187 aagaaaagaagatcg 201
|||||||||||||||
Sbjct: 127 aagaaaagaagatcg 113
>PTA.sd.6841.C1 nseq=13
Length = 932
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 145 gtccatggcttctgg 159
|||||||||||||||
Sbjct: 189 gtccatggcttctgg 203
>PTA.sd.6833.C1 nseq=5
Length = 1218
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 179 agacgaccaagaaaa 193
|||||||||||||||
Sbjct: 655 agacgaccaagaaaa 641
>PTA.sd.6769.C1 nseq=13
Length = 1612
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 148 catggcttctggatc 162
|||||||||||||||
Sbjct: 109 catggcttctggatc 123
>PTA.sd.6345.C1 nseq=5
Length = 1748
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 187 aagaaaagaagatcg 201
|||||||||||||||
Sbjct: 179 aagaaaagaagatcg 193
>PTA.sd.5878.C1 nseq=55
Length = 952
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 40 ggtgaagaaagcgga 54
|||||||||||||||
Sbjct: 57 ggtgaagaaagcgga 43
>PTA.sd.5577.C1 nseq=28
Length = 1516
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 142 tttgtccatggcttc 156
|||||||||||||||
Sbjct: 1154 tttgtccatggcttc 1140
>PTA.sd.4880.C1 nseq=4
Length = 1752
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 256 tataagtatataaaa 270
|||||||||||||||
Sbjct: 345 tataagtatataaaa 359
>PTA.sd.4021.C1 nseq=18
Length = 1844
Score = 30.2 bits (15), Expect = 8.5
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 121 gttggaggtgatgctgatg 139
||||||| |||||||||||
Sbjct: 1458 gttggagctgatgctgatg 1440
>PTA.sd.3982.C1 nseq=43
Length = 1267
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 67 gctgatccagctagc 81
|||||||||||||||
Sbjct: 356 gctgatccagctagc 342
>PTA.sd.2929.C1 nseq=42
Length = 1797
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 176 agaagacgaccaaga 190
|||||||||||||||
Sbjct: 438 agaagacgaccaaga 424
>PTA.sd.1751.C1 nseq=9
Length = 3236
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 ggtgatgctgatgct 141
|||||||||||||||
Sbjct: 1003 ggtgatgctgatgct 1017
>PTA.sd.16485.C2 nseq=20
Length = 2412
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 cttttccatggaagt 108
|||||||||||||||
Sbjct: 2120 cttttccatggaagt 2134
>PTA.sd.15620.C1 nseq=2
Length = 2129
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 150 tggcttctggatccg 164
|||||||||||||||
Sbjct: 1927 tggcttctggatccg 1941
>PTA.sd.15609.C1 nseq=5
Length = 1001
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 228 taacgattttgaacc 242
|||||||||||||||
Sbjct: 427 taacgattttgaacc 413
>PTA.sd.15291.C1 nseq=25
Length = 902
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 182 cgaccaagaaaagaa 196
|||||||||||||||
Sbjct: 71 cgaccaagaaaagaa 85
>PTA.sd.13869.C1 nseq=10
Length = 2727
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 38 gaggtgaagaaagcg 52
|||||||||||||||
Sbjct: 434 gaggtgaagaaagcg 448
>PTA.sd.13141.C1 nseq=3
Length = 2857
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 ggtgatgctgatgct 141
|||||||||||||||
Sbjct: 82 ggtgatgctgatgct 96
>PTA.sd.12785.C1 nseq=35
Length = 3329
Score = 30.2 bits (15), Expect = 8.5
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 192 aagaagatcgtgggatgga 210
||||||||||||| |||||
Sbjct: 62 aagaagatcgtggaatgga 44
>PTA.sd.12290.C1 nseq=2
Length = 1171
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 178 aagacgaccaagaaa 192
|||||||||||||||
Sbjct: 1140 aagacgaccaagaaa 1154
>PTA.sd.12253.C1 nseq=5
Length = 1483
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 171 gtttcagaagacgac 185
|||||||||||||||
Sbjct: 1088 gtttcagaagacgac 1102
>PTA.sd.1225.C1 nseq=6
Length = 2968
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 123 tggaggtgatgctga 137
|||||||||||||||
Sbjct: 2499 tggaggtgatgctga 2485
>PTA.sd.10606.C1 nseq=103
Length = 2762
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 cgctgatccagctag 80
|||||||||||||||
Sbjct: 1852 cgctgatccagctag 1866
>PTA.sd.10001.C1 nseq=10
Length = 5448
Score = 30.2 bits (15), Expect = 8.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 129 tgatgctgatgcttttgtc 147
|||| ||||||||||||||
Sbjct: 2437 tgattctgatgcttttgtc 2455
>At5g42840.F
Length = 2016
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 ttttccatggaagtc 109
|||||||||||||||
Sbjct: 1448 ttttccatggaagtc 1462
>At5g16690.F
Length = 1671
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 248 aatgtaaatataagt 262
|||||||||||||||
Sbjct: 1654 aatgtaaatataagt 1640
>At4g28000.F
Length = 2181
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 213 aatatattacaggaa 227
|||||||||||||||
Sbjct: 1093 aatatattacaggaa 1107
>At4g13600.F
Length = 771
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 239 aaccgagaaaatgta 253
|||||||||||||||
Sbjct: 486 aaccgagaaaatgta 472
>At3g56530.F
Length = 960
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 182 cgaccaagaaaagaa 196
|||||||||||||||
Sbjct: 138 cgaccaagaaaagaa 124
>At1g55440.F
Length = 1962
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 ggtgatgctgatgct 141
|||||||||||||||
Sbjct: 412 ggtgatgctgatgct 426
>At1g06910.F
Length = 1173
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 176 agaagacgaccaaga 190
|||||||||||||||
Sbjct: 570 agaagacgaccaaga 584
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 291
length of database: 39,126,732
effective HSP length: 16
effective length of query: 275
effective length of database: 38,700,540
effective search space: 10642648500
effective search space used: 10642648500
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)