BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_07862
(188 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31270.F 373 e-103
PTA.sd.14858.C1 nseq=21 36 0.086
PTA.sd.11304.C2 nseq=2 34 0.34
At4g28470.F PTA.sd.12919.singlet 32 1.3
PTA.sd.7754.C1 nseq=15 32 1.3
PTA.sd.17216.C1 nseq=9 32 1.3
PTA.sd.17206.C1 nseq=7 32 1.3
PTA.sd.15427.C1 nseq=16 32 1.3
PTA.sd.11864.C1 nseq=11 32 1.3
At5g45570.F 32 1.3
At5g03680.F 32 1.3
At2g33750.F PTA.sd.6317.singlet 30 5.3
At1g06470.F PTA.sd.431.singlet 30 5.3
PTA.sd.9647.C1 nseq=2 30 5.3
PTA.sd.9263.C1 nseq=8 30 5.3
>At1g31270.F
Length = 273
Score = 373 bits (188), Expect = e-103
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 1 gaagagccgttacgcctgaaccaaagcaggctacaagacaagcttggaggctactgcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 gaagagccgttacgcctgaaccaaagcaggctacaagacaagcttggaggctactgcaga 144
Query: 61 ggagcgtgtagaggagaggaaccgagaaggatccagaaggagactaggttaaaatctctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ggagcgtgtagaggagaggaaccgagaaggatccagaaggagactaggttaaaatctctt 204
Query: 121 gctctatttaagttgagcattgtagagagagaaaagttaagaaacacagaggcacttaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gctctatttaagttgagcattgtagagagagaaaagttaagaaacacagaggcacttaat 264
Query: 181 cgagagta 188
||||||||
Sbjct: 265 cgagagta 272
>PTA.sd.14858.C1 nseq=21
Length = 1802
Score = 36.2 bits (18), Expect = 0.086
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 41 agcttggaggctactgca 58
||||||||||||||||||
Sbjct: 1533 agcttggaggctactgca 1516
>PTA.sd.11304.C2 nseq=2
Length = 1746
Score = 34.2 bits (17), Expect = 0.34
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 139 attgtagagagagaaaa 155
|||||||||||||||||
Sbjct: 30 attgtagagagagaaaa 46
>At4g28470.F PTA.sd.12919.singlet
Length = 3312
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 45 tggaggctactgcaga 60
||||||||||||||||
Sbjct: 1901 tggaggctactgcaga 1916
>PTA.sd.7754.C1 nseq=15
Length = 5500
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 12 acgcctgaaccaaagc 27
||||||||||||||||
Sbjct: 3423 acgcctgaaccaaagc 3408
>PTA.sd.17216.C1 nseq=9
Length = 1774
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 140 ttgtagagagagaaaa 155
||||||||||||||||
Sbjct: 60 ttgtagagagagaaaa 75
>PTA.sd.17206.C1 nseq=7
Length = 1675
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 153 aaagttaagaaacaca 168
||||||||||||||||
Sbjct: 1596 aaagttaagaaacaca 1611
>PTA.sd.15427.C1 nseq=16
Length = 2177
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 141 tgtagagagagaaaag 156
||||||||||||||||
Sbjct: 60 tgtagagagagaaaag 75
>PTA.sd.11864.C1 nseq=11
Length = 871
Score = 32.2 bits (16), Expect = 1.3
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 138 cattgtagagagagaaaagt 157
||||||||||||||| ||||
Sbjct: 537 cattgtagagagagagaagt 518
>At5g45570.F
Length = 2766
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 133 ttgagcattgtagaga 148
||||||||||||||||
Sbjct: 2183 ttgagcattgtagaga 2168
>At5g03680.F
Length = 1776
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 109 ttaaaatctcttgctc 124
||||||||||||||||
Sbjct: 1285 ttaaaatctcttgctc 1270
>At2g33750.F PTA.sd.6317.singlet
Length = 1071
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 109 ttaaaatctcttgct 123
|||||||||||||||
Sbjct: 752 ttaaaatctcttgct 738
>At1g06470.F PTA.sd.431.singlet
Length = 1362
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 89 ggatccagaaggaga 103
|||||||||||||||
Sbjct: 962 ggatccagaaggaga 948
>PTA.sd.9647.C1 nseq=2
Length = 3363
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 166 acagaggcacttaat 180
|||||||||||||||
Sbjct: 1956 acagaggcacttaat 1970
>PTA.sd.9263.C1 nseq=8
Length = 2392
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 145 gagagagaaaagtta 159
|||||||||||||||
Sbjct: 89 gagagagaaaagtta 75
>PTA.sd.9101.C1 nseq=8
Length = 2159
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 13 cgcctgaaccaaagc 27
|||||||||||||||
Sbjct: 1832 cgcctgaaccaaagc 1818
>PTA.sd.7631.C1 nseq=6
Length = 1146
Score = 30.2 bits (15), Expect = 5.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 153 aaagttaagaaacacagag 171
||||| |||||||||||||
Sbjct: 91 aaagtgaagaaacacagag 73
>PTA.sd.6439.C1 nseq=2
Length = 794
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 85 agaaggatccagaag 99
|||||||||||||||
Sbjct: 36 agaaggatccagaag 22
>PTA.sd.5233.C1 nseq=15
Length = 861
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 gaaggatccagaagg 100
|||||||||||||||
Sbjct: 243 gaaggatccagaagg 257
>PTA.sd.3091.C1 nseq=3
Length = 3119
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 aggctacaagacaag 42
|||||||||||||||
Sbjct: 951 aggctacaagacaag 965
>PTA.sd.2736.C1 nseq=2
Length = 1472
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 10 ttacgcctgaaccaa 24
|||||||||||||||
Sbjct: 1087 ttacgcctgaaccaa 1073
>PTA.sd.1941.C1 nseq=3
Length = 4007
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 96 gaaggagactaggtt 110
|||||||||||||||
Sbjct: 3336 gaaggagactaggtt 3322
>PTA.sd.1775.C1 nseq=6
Length = 4405
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 100 gagactaggttaaaa 114
|||||||||||||||
Sbjct: 1417 gagactaggttaaaa 1431
>PTA.sd.1681.C1 nseq=2
Length = 1261
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 135 gagcattgtagagag 149
|||||||||||||||
Sbjct: 1205 gagcattgtagagag 1191
>PTA.sd.12574.C1 nseq=13
Length = 1636
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 157 ttaagaaacacagag 171
|||||||||||||||
Sbjct: 1505 ttaagaaacacagag 1491
>PTA.sd.11940.C1 nseq=3
Length = 872
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 96 gaaggagactaggtt 110
|||||||||||||||
Sbjct: 276 gaaggagactaggtt 262
>PTA.sd.11408.C1 nseq=7
Length = 2668
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 146 agagagaaaagttaa 160
|||||||||||||||
Sbjct: 2570 agagagaaaagttaa 2556
>PTA.sd.1130.C1 nseq=10
Length = 1152
Score = 30.2 bits (15), Expect = 5.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 144 agagagagaaaagttaaga 162
|||||||||||||| ||||
Sbjct: 81 agagagagaaaagtaaaga 63
>PTA.sd.11274.C1 nseq=5
Length = 3503
Score = 30.2 bits (15), Expect = 5.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 71 gaggagaggaaccgagaag 89
|||||||||||| ||||||
Sbjct: 3106 gaggagaggaacagagaag 3124
>PTA.sd.10000.C1 nseq=14
Length = 2236
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 atccagaaggagact 105
|||||||||||||||
Sbjct: 1528 atccagaaggagact 1514
>At5g43620.F
Length = 1233
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 70 agaggagaggaaccg 84
|||||||||||||||
Sbjct: 108 agaggagaggaaccg 122
>At5g08700.F
Length = 2307
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 85 agaaggatccagaag 99
|||||||||||||||
Sbjct: 389 agaaggatccagaag 403
>At4g05600.F
Length = 828
Score = 30.2 bits (15), Expect = 5.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 71 gaggagaggaaccgagaag 89
|||||||||||| ||||||
Sbjct: 789 gaggagaggaacagagaag 771
>At2g19530.F
Length = 609
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 89 ggatccagaaggaga 103
|||||||||||||||
Sbjct: 24 ggatccagaaggaga 10
>At1g32970.F
Length = 2205
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 75 agaggaaccgagaag 89
|||||||||||||||
Sbjct: 779 agaggaaccgagaag 765
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 188
length of database: 39,126,732
effective HSP length: 16
effective length of query: 172
effective length of database: 38,700,540
effective search space: 6656492880
effective search space used: 6656492880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)