BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_07647
(230 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01520.F 456 e-128
PTA.sd.16943.C1 nseq=5 60 7e-09
PTA.sd.14008.C1 nseq=17 52 2e-06
PTA.sd.16763.C1 nseq=8 34 0.42
PTA.sd.1853.C1 nseq=9 32 1.7
PTA.sd.14332.C1 nseq=5 32 1.7
At4g19560.F 32 1.7
At2g11190.F 32 1.7
PTA.sd.9435.C1 nseq=21 30 6.6
PTA.sd.9417.C1 nseq=3 30 6.6
PTA.sd.8459.C1 nseq=8 30 6.6
PTA.sd.8446.C1 nseq=7 30 6.6
PTA.sd.5427.C1 nseq=6 30 6.6
PTA.sd.4290.C1 nseq=39 30 6.6
PTA.sd.2232.C1 nseq=11 30 6.6
>At1g01520.F
Length = 864
Score = 456 bits (230), Expect = e-128
Identities = 230/230 (100%)
Strand = Plus / Plus
Query: 1 tggtgactgtaaaccctagccaagctcattgtttgcctatgaaaatgagtctaccgggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tggtgactgtaaaccctagccaagctcattgtttgcctatgaaaatgagtctaccgggtt 61
Query: 61 tcaatactcttccccacacggcaacaacgataccggtttccatacggagcaataggacga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tcaatactcttccccacacggcaacaacgataccggtttccatacggagcaataggacga 121
Query: 121 tgtcgttttttgaggatccaacaaagaaggttagaaagccttacactatcaccaaatcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgtcgttttttgaggatccaacaaagaaggttagaaagccttacactatcaccaaatcta 181
Query: 181 gagagaactggacggagcaagaacacgacaagttccttgaagcccttcat 230
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gagagaactggacggagcaagaacacgacaagttccttgaagcccttcat 231
>PTA.sd.16943.C1 nseq=5
Length = 1464
Score = 60.0 bits (30), Expect = 7e-09
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 144 aagaaggttagaaagccttacactatcaccaaatctagagagaactggacggagcaagaa 203
|||||| |||| |||||||| ||||| || || |||||||||| ||||||||||| ||
Sbjct: 284 aagaagattaggaagccttatactattactaagtctagagagagctggacggagcctgag 343
Query: 204 cacgacaagttccttgaagcccttca 229
|| || || ||||||||||| |||||
Sbjct: 344 catgataaattccttgaagctcttca 369
>PTA.sd.14008.C1 nseq=17
Length = 1347
Score = 52.0 bits (26), Expect = 2e-06
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 160 cttacactatcaccaaatctagagagaactggacggagcaagaacacgacaagttccttg 219
||||||| |||||||| |||||||||| ||||| || ||||||||||||||| || |
Sbjct: 211 cttacacaatcaccaagtctagagagagttggactgaaggagaacacgacaagtttctgg 270
Query: 220 aagcccttca 229
|||| |||||
Sbjct: 271 aagctcttca 280
>PTA.sd.16763.C1 nseq=8
Length = 977
Score = 34.2 bits (17), Expect = 0.42
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 161 ttacactatcaccaaat 177
|||||||||||||||||
Sbjct: 537 ttacactatcaccaaat 553
>PTA.sd.1853.C1 nseq=9
Length = 1792
Score = 32.2 bits (16), Expect = 1.7
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 168 atcaccaaatctagagagaa 187
||||||||||| ||||||||
Sbjct: 210 atcaccaaatcgagagagaa 191
>PTA.sd.14332.C1 nseq=5
Length = 2194
Score = 32.2 bits (16), Expect = 1.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 126 ttttttgaggatccaa 141
||||||||||||||||
Sbjct: 2176 ttttttgaggatccaa 2161
>At4g19560.F
Length = 1425
Score = 32.2 bits (16), Expect = 1.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 40 tgaaaatgagtctacc 55
||||||||||||||||
Sbjct: 215 tgaaaatgagtctacc 230
>At2g11190.F
Length = 1410
Score = 32.2 bits (16), Expect = 1.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 134 ggatccaacaaagaag 149
||||||||||||||||
Sbjct: 231 ggatccaacaaagaag 246
>PTA.sd.9435.C1 nseq=21
Length = 2471
Score = 30.2 bits (15), Expect = 6.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 6 actgtaaaccctagc 20
|||||||||||||||
Sbjct: 423 actgtaaaccctagc 409
>PTA.sd.9417.C1 nseq=3
Length = 2836
Score = 30.2 bits (15), Expect = 6.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 132 gaggatccaacaaagaagg 150
|||||||||||||| ||||
Sbjct: 1966 gaggatccaacaaacaagg 1948
>PTA.sd.8459.C1 nseq=8
Length = 2352
Score = 30.2 bits (15), Expect = 6.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 164 cactatcaccaaatc 178
|||||||||||||||
Sbjct: 1117 cactatcaccaaatc 1103
>PTA.sd.8446.C1 nseq=7
Length = 2083
Score = 30.2 bits (15), Expect = 6.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 135 gatccaacaaagaag 149
|||||||||||||||
Sbjct: 802 gatccaacaaagaag 816
>PTA.sd.5427.C1 nseq=6
Length = 1802
Score = 30.2 bits (15), Expect = 6.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 tccttgaagcccttc 228
|||||||||||||||
Sbjct: 1608 tccttgaagcccttc 1594
>PTA.sd.4290.C1 nseq=39
Length = 647
Score = 30.2 bits (15), Expect = 6.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 115 ggacgatgtcgtttt 129
|||||||||||||||
Sbjct: 410 ggacgatgtcgtttt 424
>PTA.sd.2232.C1 nseq=11
Length = 3066
Score = 30.2 bits (15), Expect = 6.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 50 tctaccgggtttcaa 64
|||||||||||||||
Sbjct: 1203 tctaccgggtttcaa 1189
>PTA.sd.17429.C1 nseq=5
Length = 852
Score = 30.2 bits (15), Expect = 6.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 21 caagctcattgtttg 35
|||||||||||||||
Sbjct: 338 caagctcattgtttg 324
>PTA.sd.16352.C1 nseq=11
Length = 5224
Score = 30.2 bits (15), Expect = 6.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 182 agagaactggacgga 196
|||||||||||||||
Sbjct: 4356 agagaactggacgga 4370
>PTA.sd.15670.C1 nseq=72
Length = 1860
Score = 30.2 bits (15), Expect = 6.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 161 ttacactatcaccaaatct 179
|||| ||||||||||||||
Sbjct: 631 ttactctatcaccaaatct 613
>PTA.sd.13844.C1 nseq=6
Length = 914
Score = 30.2 bits (15), Expect = 6.6
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 33 ttgcctatgaaaatgagtctacc 55
||||| ||||| |||||||||||
Sbjct: 685 ttgccaatgaatatgagtctacc 663
>PTA.sd.13101.C1 nseq=14
Length = 2145
Score = 30.2 bits (15), Expect = 6.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 tttttgaggatccaa 141
|||||||||||||||
Sbjct: 1039 tttttgaggatccaa 1053
>PTA.sd.13080.C1 nseq=6
Length = 2206
Score = 30.2 bits (15), Expect = 6.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 tccttgaagcccttc 228
|||||||||||||||
Sbjct: 914 tccttgaagcccttc 900
>PTA.sd.12718.C1 nseq=17
Length = 1242
Score = 30.2 bits (15), Expect = 6.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 168 atcaccaaatctaga 182
|||||||||||||||
Sbjct: 1027 atcaccaaatctaga 1013
>PTA.sd.116.C1 nseq=4
Length = 1412
Score = 30.2 bits (15), Expect = 6.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 140 aacaaagaaggttag 154
|||||||||||||||
Sbjct: 1022 aacaaagaaggttag 1036
>At4g36150.F
Length = 3540
Score = 30.2 bits (15), Expect = 6.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 170 caccaaatctagaga 184
|||||||||||||||
Sbjct: 2690 caccaaatctagaga 2704
>At2g28620.F
Length = 3231
Score = 30.2 bits (15), Expect = 6.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 215 ccttgaagcccttca 229
|||||||||||||||
Sbjct: 2063 ccttgaagcccttca 2049
>At1g72960.F
Length = 2247
Score = 30.2 bits (15), Expect = 6.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 134 ggatccaacaaagaa 148
|||||||||||||||
Sbjct: 1695 ggatccaacaaagaa 1709
>At1g09900.F
Length = 1797
Score = 30.2 bits (15), Expect = 6.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 155 aaagccttacactatcacc 173
||||||| |||||||||||
Sbjct: 1440 aaagcctgacactatcacc 1458
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 230
length of database: 39,126,732
effective HSP length: 16
effective length of query: 214
effective length of database: 38,700,540
effective search space: 8281915560
effective search space used: 8281915560
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)