BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_07530
(250 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01130.F 496 e-140
At5g47170.F 117 4e-26
PTA.sd.14637.C1 nseq=36 40 0.007
PTA.sd.8192.C1 nseq=17 34 0.46
PTA.sd.10063.C1 nseq=21 34 0.46
PTA.sd.2297.C1 nseq=44 32 1.8
PTA.sd.2296.C1 nseq=43 32 1.8
PTA.sd.18045.C1 nseq=19 32 1.8
PTA.sd.16986.C1 nseq=3 32 1.8
PTA.sd.16237.C1 nseq=3 32 1.8
PTA.sd.10491.C1 nseq=3 32 1.8
At1g75700.F 32 1.8
At1g11560.F 32 1.8
At2g37320.F PTA.sd.6572.singlet 30 7.2
PTA.sd.819.C1 nseq=7 30 7.2
>At1g01130.F
Length = 501
Score = 496 bits (250), Expect = e-140
Identities = 250/250 (100%)
Strand = Plus / Plus
Query: 1 ggagaaacgttcagattcagagagtgtagagattttgggtgattgggattcacctcctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ggagaaacgttcagattcagagagtgtagagattttgggtgattgggattcacctcctcc 62
Query: 61 ggaagaaagaatcgtaatggtttctgttcccacttcaccagaatctgattacgcgagatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ggaagaaagaatcgtaatggtttctgttcccacttcaccagaatctgattacgcgagatc 122
Query: 121 gaatcaaccgaaagagatcgaatctagggtttcagacaaggaaacagcgtcggcatccgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gaatcaaccgaaagagatcgaatctagggtttcagacaaggaaacagcgtcggcatccgg 182
Query: 181 agaagtggctgcgaggagggtgttgccgccgtggatggatccgtcgtatgaatggggtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 agaagtggctgcgaggagggtgttgccgccgtggatggatccgtcgtatgaatggggtgg 242
Query: 241 tggcaaatgg 250
||||||||||
Sbjct: 243 tggcaaatgg 252
>At5g47170.F
Length = 453
Score = 117 bits (59), Expect = 4e-26
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 58 tccggaagaaagaatcgtaatggtttctgttcccacttcaccagaatctgattacgcgag 117
|||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct: 69 tccggaagaaggaatcgtaatggtttctgttcccacttcaccagagtctgacgatgcgag 128
Query: 118 atcgaatcaaccgaaagagatcgaatctagggtttcagacaag 160
|| ||||| ||| |||||||| ||| |||||||||| ||||||
Sbjct: 129 attgaatccaccaaaagagattgaaactagggtttcggacaag 171
Score = 87.7 bits (44), Expect = 4e-17
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 191 gcgaggagggtgttgccgccgtggatggatccgtcgtatgaatggggtggtggcaaatgg 250
|||||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 211 gcgaggagagtgttgccgccgtggatggagccgtcgtacgaatggggtggtgggaaatgg 270
>PTA.sd.14637.C1 nseq=36
Length = 1156
Score = 40.1 bits (20), Expect = 0.007
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 134 gagatcgaatctagggtttc 153
||||||||||||||||||||
Sbjct: 75 gagatcgaatctagggtttc 56
>PTA.sd.8192.C1 nseq=17
Length = 4384
Score = 34.2 bits (17), Expect = 0.46
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 134 gagatcgaatctagggtttca 154
|||| ||||||||||||||||
Sbjct: 57 gagaacgaatctagggtttca 37
>PTA.sd.10063.C1 nseq=21
Length = 3181
Score = 34.2 bits (17), Expect = 0.46
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 230 gaatggggtggtggcaa 246
|||||||||||||||||
Sbjct: 1061 gaatggggtggtggcaa 1077
>PTA.sd.2297.C1 nseq=44
Length = 936
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 60 cggaagaaagaatcgt 75
||||||||||||||||
Sbjct: 108 cggaagaaagaatcgt 93
>PTA.sd.2296.C1 nseq=43
Length = 833
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 60 cggaagaaagaatcgt 75
||||||||||||||||
Sbjct: 103 cggaagaaagaatcgt 88
>PTA.sd.18045.C1 nseq=19
Length = 1894
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 34 tttgggtgattgggat 49
||||||||||||||||
Sbjct: 814 tttgggtgattgggat 829
>PTA.sd.16986.C1 nseq=3
Length = 2079
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 13 agattcagagagtgta 28
||||||||||||||||
Sbjct: 567 agattcagagagtgta 552
>PTA.sd.16237.C1 nseq=3
Length = 2456
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 127 accgaaagagatcgaa 142
||||||||||||||||
Sbjct: 1755 accgaaagagatcgaa 1770
>PTA.sd.10491.C1 nseq=3
Length = 2705
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 129 cgaaagagatcgaatc 144
||||||||||||||||
Sbjct: 895 cgaaagagatcgaatc 880
>At1g75700.F
Length = 501
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 62 gaagaaagaatcgtaa 77
||||||||||||||||
Sbjct: 249 gaagaaagaatcgtaa 234
>At1g11560.F
Length = 1032
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 113 gcgagatcgaatcaac 128
||||||||||||||||
Sbjct: 344 gcgagatcgaatcaac 359
>At2g37320.F PTA.sd.6572.singlet
Length = 1503
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 92 acttcaccagaatct 106
|||||||||||||||
Sbjct: 512 acttcaccagaatct 498
>PTA.sd.819.C1 nseq=7
Length = 927
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 18 cagagagtgtagaga 32
|||||||||||||||
Sbjct: 114 cagagagtgtagaga 100
>PTA.sd.8029.C1 nseq=18
Length = 1269
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 234 ggggtggtggcaaat 248
|||||||||||||||
Sbjct: 1181 ggggtggtggcaaat 1167
>PTA.sd.6929.C1 nseq=32
Length = 3392
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 96 caccagaatctgatt 110
|||||||||||||||
Sbjct: 882 caccagaatctgatt 868
>PTA.sd.5168.C1 nseq=19
Length = 2065
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 47 gattcacctcctccg 61
|||||||||||||||
Sbjct: 542 gattcacctcctccg 528
>PTA.sd.4558.C1 nseq=19
Length = 1614
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 11 tcagattcagagagt 25
|||||||||||||||
Sbjct: 35 tcagattcagagagt 49
>PTA.sd.4331.C1 nseq=23
Length = 1357
Score = 30.2 bits (15), Expect = 7.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 126 aaccgaaagagatcgaatc 144
|||| ||||||||||||||
Sbjct: 289 aaccaaaagagatcgaatc 307
>PTA.sd.17844.C1 nseq=27
Length = 4106
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 63 aagaaagaatcgtaa 77
|||||||||||||||
Sbjct: 2506 aagaaagaatcgtaa 2520
>PTA.sd.16616.C1 nseq=19
Length = 3205
Score = 30.2 bits (15), Expect = 7.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 146 agggtttcagacaaggaaa 164
||||||| |||||||||||
Sbjct: 2486 agggtttaagacaaggaaa 2504
>PTA.sd.15955.C1 nseq=7
Length = 971
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 140 gaatctagggtttca 154
|||||||||||||||
Sbjct: 116 gaatctagggtttca 130
>PTA.sd.15162.C1 nseq=10
Length = 3580
Score = 30.2 bits (15), Expect = 7.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 133 agagatcgaatctagggtt 151
|||||||||||| ||||||
Sbjct: 76 agagatcgaatcgagggtt 58
>PTA.sd.14522.C1 nseq=11
Length = 3499
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 63 aagaaagaatcgtaa 77
|||||||||||||||
Sbjct: 1977 aagaaagaatcgtaa 1991
>PTA.sd.14332.C1 nseq=5
Length = 2194
Score = 30.2 bits (15), Expect = 7.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 66 aaagaatcgtaatggtttc 84
|||||||||||||| ||||
Sbjct: 423 aaagaatcgtaatgctttc 405
>PTA.sd.14001.C1 nseq=11
Length = 1748
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 94 ttcaccagaatctga 108
|||||||||||||||
Sbjct: 257 ttcaccagaatctga 243
>PTA.sd.13455.C1 nseq=25
Length = 2666
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 99 cagaatctgattacg 113
|||||||||||||||
Sbjct: 467 cagaatctgattacg 481
>PTA.sd.1325.C1 nseq=8
Length = 1687
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 63 aagaaagaatcgtaa 77
|||||||||||||||
Sbjct: 76 aagaaagaatcgtaa 90
>PTA.sd.12084.C1 nseq=8
Length = 1248
Score = 30.2 bits (15), Expect = 7.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 76 aatggtttctgttcccact 94
|||||||||||||| ||||
Sbjct: 1141 aatggtttctgttcacact 1159
>At5g60010.F
Length = 2520
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 19 agagagtgtagagat 33
|||||||||||||||
Sbjct: 45 agagagtgtagagat 59
>At5g27230.F
Length = 2847
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 130 gaaagagatcgaatc 144
|||||||||||||||
Sbjct: 117 gaaagagatcgaatc 131
>At5g14340.F
Length = 792
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 131 aaagagatcgaatct 145
|||||||||||||||
Sbjct: 707 aaagagatcgaatct 693
>At4g32390.F
Length = 1053
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 127 accgaaagagatcga 141
|||||||||||||||
Sbjct: 456 accgaaagagatcga 442
>At4g31220.F
Length = 732
Score = 30.2 bits (15), Expect = 7.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 150 tttcagacaaggaaacagc 168
||||||||||||| |||||
Sbjct: 84 tttcagacaaggagacagc 102
>At4g04980.F
Length = 2046
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 13 agattcagagagtgt 27
|||||||||||||||
Sbjct: 411 agattcagagagtgt 425
>At2g47430.F
Length = 3369
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 12 cagattcagagagtg 26
|||||||||||||||
Sbjct: 2840 cagattcagagagtg 2854
>At2g42150.F
Length = 1896
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 148 ggtttcagacaagga 162
|||||||||||||||
Sbjct: 1347 ggtttcagacaagga 1361
>At1g15830.F
Length = 1452
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 47 gattcacctcctccg 61
|||||||||||||||
Sbjct: 734 gattcacctcctccg 720
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 250
length of database: 39,126,732
effective HSP length: 16
effective length of query: 234
effective length of database: 38,700,540
effective search space: 9055926360
effective search space used: 9055926360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)