BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_07447
(265 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01660.F 525 e-149
PTA.sd.9925.C1 nseq=46 36 0.12
PTA.sd.9847.C1 nseq=11 36 0.12
At4g13690.F 36 0.12
PTA.sd.7911.C1 nseq=13 34 0.49
PTA.sd.3722.C1 nseq=3 34 0.49
PTA.sd.1929.C1 nseq=4 34 0.49
PTA.sd.15107.C1 nseq=2 34 0.49
PTA.sd.1355.C1 nseq=5 34 0.49
PTA.sd.10024.C1 nseq=5 34 0.49
At3g17205.F PTA.sd.8717.singlet 32 1.9
At2g28450.F PTA.sd.5943.singlet 32 1.9
PTA.sd.949.C1 nseq=4 32 1.9
PTA.sd.843.C1 nseq=4 32 1.9
PTA.sd.6919.C1 nseq=13 32 1.9
>At1g01660.F
Length = 1707
Score = 525 bits (265), Expect = e-149
Identities = 265/265 (100%)
Strand = Plus / Plus
Query: 1 aagagagtacgaggccatgtacaacgaagaggcgaagctaaggaaagaaggtaaagaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aagagagtacgaggccatgtacaacgaagaggcgaagctaaggaaagaaggtaaagaagc 854
Query: 61 attagcgaagcagaggaaaatggtggagaagactaaacaagagagggacgacgcgctaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 attagcgaagcagaggaaaatggtggagaagactaaacaagagagggacgacgcgctaat 914
Query: 121 catcattctaaatggaaggaagctatacaatgaggaactgagacgcagagttgaagctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 catcattctaaatggaaggaagctatacaatgaggaactgagacgcagagttgaagctga 974
Query: 181 agagatgttggggaaagagaaagaagaacacgagagaactaagaaggagatcgaagaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 agagatgttggggaaagagaaagaagaacacgagagaactaagaaggagatcgaagaagt 1034
Query: 241 gcgagccattgttcaggatggtact 265
|||||||||||||||||||||||||
Sbjct: 1035 gcgagccattgttcaggatggtact 1059
>PTA.sd.9925.C1 nseq=46
Length = 2322
Score = 36.2 bits (18), Expect = 0.12
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 222 agaaggagatcgaagaag 239
||||||||||||||||||
Sbjct: 88 agaaggagatcgaagaag 71
>PTA.sd.9847.C1 nseq=11
Length = 3339
Score = 36.2 bits (18), Expect = 0.12
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 193 gaaagagaaagaagaaca 210
||||||||||||||||||
Sbjct: 2106 gaaagagaaagaagaaca 2123
>At4g13690.F
Length = 585
Score = 36.2 bits (18), Expect = 0.12
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 191 gggaaagagaaagaagaa 208
||||||||||||||||||
Sbjct: 401 gggaaagagaaagaagaa 418
>PTA.sd.7911.C1 nseq=13
Length = 1033
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 225 aggagatcgaagaagtg 241
|||||||||||||||||
Sbjct: 748 aggagatcgaagaagtg 764
>PTA.sd.3722.C1 nseq=3
Length = 1054
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 170 gttgaagctgaagagat 186
|||||||||||||||||
Sbjct: 34 gttgaagctgaagagat 18
>PTA.sd.1929.C1 nseq=4
Length = 1554
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 99 aagagagggacgacgcg 115
|||||||||||||||||
Sbjct: 207 aagagagggacgacgcg 191
>PTA.sd.15107.C1 nseq=2
Length = 3597
Score = 34.2 bits (17), Expect = 0.49
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 131 aatggaaggaagctatacaat 151
|||||||||||||| ||||||
Sbjct: 425 aatggaaggaagctttacaat 445
>PTA.sd.1355.C1 nseq=5
Length = 1674
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 139 gaagctatacaatgagg 155
|||||||||||||||||
Sbjct: 1238 gaagctatacaatgagg 1254
>PTA.sd.10024.C1 nseq=5
Length = 942
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 78 aaatggtggagaagact 94
|||||||||||||||||
Sbjct: 272 aaatggtggagaagact 288
>At3g17205.F PTA.sd.8717.singlet
Length = 1926
Score = 32.2 bits (16), Expect = 1.9
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 47 gaaggtaaagaagcattagc 66
|||| |||||||||||||||
Sbjct: 985 gaagataaagaagcattagc 1004
>At2g28450.F PTA.sd.5943.singlet
Length = 2553
Score = 32.2 bits (16), Expect = 1.9
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 195 aagagaaagaagaacacgag 214
|||||||||||||| |||||
Sbjct: 407 aagagaaagaagaagacgag 426
>PTA.sd.949.C1 nseq=4
Length = 2982
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 223 gaaggagatcgaagaa 238
||||||||||||||||
Sbjct: 186 gaaggagatcgaagaa 171
>PTA.sd.843.C1 nseq=4
Length = 2496
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 195 aagagaaagaagaaca 210
||||||||||||||||
Sbjct: 2339 aagagaaagaagaaca 2324
>PTA.sd.6919.C1 nseq=13
Length = 1807
Score = 32.2 bits (16), Expect = 1.9
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 69 agcagaggaaaatggtggag 88
||||||||||| ||||||||
Sbjct: 225 agcagaggaaagtggtggag 244
>PTA.sd.5553.C1 nseq=7
Length = 2605
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 77 aaaatggtggagaaga 92
||||||||||||||||
Sbjct: 91 aaaatggtggagaaga 76
>PTA.sd.5365.C1 nseq=5
Length = 1860
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 171 ttgaagctgaagagat 186
||||||||||||||||
Sbjct: 1017 ttgaagctgaagagat 1002
>PTA.sd.4693.C1 nseq=4
Length = 860
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 193 gaaagagaaagaagaa 208
||||||||||||||||
Sbjct: 432 gaaagagaaagaagaa 447
>PTA.sd.3074.C1 nseq=8
Length = 2434
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 189 tggggaaagagaaaga 204
||||||||||||||||
Sbjct: 943 tggggaaagagaaaga 958
>PTA.sd.3045.C1 nseq=16
Length = 1468
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 77 aaaatggtggagaaga 92
||||||||||||||||
Sbjct: 737 aaaatggtggagaaga 752
>PTA.sd.2965.C1 nseq=18
Length = 2045
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 224 aaggagatcgaagaag 239
||||||||||||||||
Sbjct: 353 aaggagatcgaagaag 368
>PTA.sd.2147.C1 nseq=6
Length = 1699
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 168 gagttgaagctgaaga 183
||||||||||||||||
Sbjct: 1004 gagttgaagctgaaga 1019
>PTA.sd.1861.C1 nseq=4
Length = 2394
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 171 ttgaagctgaagagat 186
||||||||||||||||
Sbjct: 2010 ttgaagctgaagagat 2025
>PTA.sd.17187.C1 nseq=17
Length = 788
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 44 aaagaaggtaaagaag 59
||||||||||||||||
Sbjct: 464 aaagaaggtaaagaag 479
>PTA.sd.16805.C1 nseq=3
Length = 676
Score = 32.2 bits (16), Expect = 1.9
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 216 gaactaagaaggagatcgaagaag 239
|||| |||| ||||||||||||||
Sbjct: 658 gaacaaagatggagatcgaagaag 635
>PTA.sd.15230.C1 nseq=7
Length = 2531
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 72 agaggaaaatggtgga 87
||||||||||||||||
Sbjct: 460 agaggaaaatggtgga 475
>PTA.sd.14970.C1 nseq=8
Length = 970
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 35 aagctaaggaaagaag 50
||||||||||||||||
Sbjct: 603 aagctaaggaaagaag 618
>PTA.sd.14783.C1 nseq=3
Length = 2034
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 66 cgaagcagaggaaaat 81
||||||||||||||||
Sbjct: 1309 cgaagcagaggaaaat 1324
>PTA.sd.14497.C1 nseq=46
Length = 1540
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 140 aagctatacaatgagg 155
||||||||||||||||
Sbjct: 1505 aagctatacaatgagg 1520
>PTA.sd.13030.C1 nseq=11
Length = 3375
Score = 32.2 bits (16), Expect = 1.9
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 71 cagaggaaaatggtggagaa 90
||||||| ||||||||||||
Sbjct: 1067 cagaggacaatggtggagaa 1086
>PTA.sd.11273.C1 nseq=6
Length = 2204
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 184 gatgttggggaaagag 199
||||||||||||||||
Sbjct: 496 gatgttggggaaagag 511
>PTA.sd.1068.C1 nseq=3
Length = 1791
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 191 gggaaagagaaagaag 206
||||||||||||||||
Sbjct: 1070 gggaaagagaaagaag 1085
>At5g45540.F
Length = 2412
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 196 agagaaagaagaacac 211
||||||||||||||||
Sbjct: 1848 agagaaagaagaacac 1863
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 196 agagaaagaagaacac 211
||||||||||||||||
Sbjct: 1875 agagaaagaagaacac 1890
>At3g19230.F
Length = 1560
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 195 aagagaaagaagaaca 210
||||||||||||||||
Sbjct: 23 aagagaaagaagaaca 8
>At1g80980.F
Length = 645
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 193 gaaagagaaagaagaa 208
||||||||||||||||
Sbjct: 381 gaaagagaaagaagaa 396
>At1g54930.F
Length = 1191
Score = 32.2 bits (16), Expect = 1.9
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 70 gcagaggaaaatggtggaga 89
||||| ||||||||||||||
Sbjct: 1122 gcagaagaaaatggtggaga 1141
>At1g52240.F
Length = 1620
Score = 32.2 bits (16), Expect = 1.9
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 72 agaggaaaatggtggagaag 91
|||||||||||||| |||||
Sbjct: 1061 agaggaaaatggtgcagaag 1080
>At1g06910.F
Length = 1173
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 133 tggaaggaagctatac 148
||||||||||||||||
Sbjct: 16 tggaaggaagctatac 31
>At5g47510.F PTA.sd.16576.singlet
Length = 1212
Score = 30.2 bits (15), Expect = 7.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 21 acaacgaagaggcga 35
|||||||||||||||
Sbjct: 626 acaacgaagaggcga 612
>At4g27250.F PTA.sd.12807.singlet
Length = 1218
Score = 30.2 bits (15), Expect = 7.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 tctaaatggaaggaa 141
|||||||||||||||
Sbjct: 265 tctaaatggaaggaa 279
>At4g21520.F PTA.sd.12345.singlet
Length = 1110
Score = 30.2 bits (15), Expect = 7.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 69 agcagaggaaaatggtgga 87
|||||| ||||||||||||
Sbjct: 21 agcagaagaaaatggtgga 39
>At4g19420.F PTA.sd.12223.singlet
Length = 792
Score = 30.2 bits (15), Expect = 7.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 76 gaaaatggtggagaa 90
|||||||||||||||
Sbjct: 180 gaaaatggtggagaa 194
>At3g51480.F PTA.sd.10132.singlet
Length = 3120
Score = 30.2 bits (15), Expect = 7.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 194 aaagagaaagaagaa 208
|||||||||||||||
Sbjct: 3031 aaagagaaagaagaa 3045
>At3g03880.F PTA.sd.7690.singlet
Length = 654
Score = 30.2 bits (15), Expect = 7.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 194 aaagagaaagaagaa 208
|||||||||||||||
Sbjct: 358 aaagagaaagaagaa 372
>At2g34420.F PTA.sd.6351.singlet
Length = 798
Score = 30.2 bits (15), Expect = 7.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 164 cgcagagttgaagctgaag 182
||||||||||||| |||||
Sbjct: 618 cgcagagttgaaggtgaag 636
>At1g17270.F PTA.sd.1246.singlet
Length = 1785
Score = 30.2 bits (15), Expect = 7.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 224 aaggagatcgaagaagtgc 242
||||| |||||||||||||
Sbjct: 478 aaggaaatcgaagaagtgc 496
>PTA.sd.9898.C1 nseq=3
Length = 11703
Score = 30.2 bits (15), Expect = 7.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 26 gaagaggcgaagcta 40
|||||||||||||||
Sbjct: 9355 gaagaggcgaagcta 9369
>PTA.sd.9546.C1 nseq=2
Length = 1568
Score = 30.2 bits (15), Expect = 7.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 191 gggaaagagaaagaa 205
|||||||||||||||
Sbjct: 909 gggaaagagaaagaa 923
>PTA.sd.9517.C1 nseq=5
Length = 1490
Score = 30.2 bits (15), Expect = 7.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 78 aaatggtggagaaga 92
|||||||||||||||
Sbjct: 721 aaatggtggagaaga 707
>PTA.sd.9493.C1 nseq=25
Length = 1554
Score = 30.2 bits (15), Expect = 7.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 221 aagaaggagatcgaagaag 239
|||||| ||||||||||||
Sbjct: 58 aagaagaagatcgaagaag 40
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 265
length of database: 39,126,732
effective HSP length: 16
effective length of query: 249
effective length of database: 38,700,540
effective search space: 9636434460
effective search space used: 9636434460
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)