BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_06787
(292 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01410.F 579 e-165
PTA.sd.17823.C1 nseq=4 38 0.035
PTA.sd.15309.C1 nseq=17 34 0.54
PTA.sd.6889.C1 nseq=26 32 2.1
PTA.sd.618.C1 nseq=3 32 2.1
PTA.sd.3410.C1 nseq=3 32 2.1
PTA.sd.2301.C1 nseq=10 32 2.1
PTA.sd.17186.C1 nseq=2 32 2.1
PTA.sd.13182.C1 nseq=6 32 2.1
At3g26190.F 32 2.1
At5g28920.F PTA.sd.15820.singlet 30 8.5
PTA.sd.9065.C1 nseq=4 30 8.5
PTA.sd.8268.C1 nseq=4 30 8.5
PTA.sd.6152.C1 nseq=8 30 8.5
PTA.sd.6148.C1 nseq=19 30 8.5
>At1g01410.F
Length = 1086
Score = 579 bits (292), Expect = e-165
Identities = 292/292 (100%)
Strand = Plus / Plus
Query: 1 ttattttggcgggagtgaagcaaaggttcatcgatgttacaacaaacttttacgggtatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttattttggcgggagtgaagcaaaggttcatcgatgttacaacaaacttttacgggtatc 547
Query: 61 gcatcatgatacaaaccataaaagttttcaagaaaagaggtgatttgaaagtgtacgacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gcatcatgatacaaaccataaaagttttcaagaaaagaggtgatttgaaagtgtacgacc 607
Query: 121 aaatcctacgcctaatcggagtccacgctctctacctaacaaaggaccctgatatgggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aaatcctacgcctaatcggagtccacgctctctacctaacaaaggaccctgatatgggaa 667
Query: 181 acaagacgtttcaacacgctattaatctacaccaccaggattgtacgacattcatcgcgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 acaagacgtttcaacacgctattaatctacaccaccaggattgtacgacattcatcgcgt 727
Query: 241 gtgggcttcaaagccactacattgagctttcgtttctgaaacatggaagcaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gtgggcttcaaagccactacattgagctttcgtttctgaaacatggaagcaa 779
>PTA.sd.17823.C1 nseq=4
Length = 1055
Score = 38.2 bits (19), Expect = 0.035
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 245 gcttcaaagccactacattgagctttcgttt 275
|||||| || |||||| ||||||||||||||
Sbjct: 534 gcttcatagtcactacgttgagctttcgttt 564
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 147 gctctctacctaacaa 162
||||||||||||||||
Sbjct: 436 gctctctacctaacaa 451
>PTA.sd.15309.C1 nseq=17
Length = 1442
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 59 tcgcatcatgatacaaa 75
|||||||||||||||||
Sbjct: 434 tcgcatcatgatacaaa 450
>PTA.sd.6889.C1 nseq=26
Length = 2157
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 22 aaaggttcatcgatgt 37
||||||||||||||||
Sbjct: 445 aaaggttcatcgatgt 430
>PTA.sd.618.C1 nseq=3
Length = 2782
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 80 aaaagttttcaagaaaagag 99
|||||||||||||| |||||
Sbjct: 1130 aaaagttttcaagacaagag 1149
>PTA.sd.3410.C1 nseq=3
Length = 3358
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 81 aaagttttcaagaaaa 96
||||||||||||||||
Sbjct: 451 aaagttttcaagaaaa 466
>PTA.sd.2301.C1 nseq=10
Length = 2062
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 142 tccacgctctctacct 157
||||||||||||||||
Sbjct: 1599 tccacgctctctacct 1614
>PTA.sd.17186.C1 nseq=2
Length = 1944
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 156 ctaacaaaggaccctg 171
||||||||||||||||
Sbjct: 998 ctaacaaaggaccctg 1013
>PTA.sd.13182.C1 nseq=6
Length = 2708
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 74 aaccataaaagttttc 89
||||||||||||||||
Sbjct: 427 aaccataaaagttttc 412
>At3g26190.F
Length = 1500
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 4 ttttggcgggagtgaa 19
||||||||||||||||
Sbjct: 896 ttttggcgggagtgaa 911
>At5g28920.F PTA.sd.15820.singlet
Length = 1533
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 240 tgtgggcttcaaagc 254
|||||||||||||||
Sbjct: 1020 tgtgggcttcaaagc 1034
>PTA.sd.9065.C1 nseq=4
Length = 1731
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 38 tacaacaaactttta 52
|||||||||||||||
Sbjct: 23 tacaacaaactttta 37
>PTA.sd.8268.C1 nseq=4
Length = 1933
Score = 30.2 bits (15), Expect = 8.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 30 atcgatgttacaacaaact 48
|||||| ||||||||||||
Sbjct: 1630 atcgatcttacaacaaact 1648
>PTA.sd.6152.C1 nseq=8
Length = 538
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 37 ttacaacaaactttt 51
|||||||||||||||
Sbjct: 440 ttacaacaaactttt 426
>PTA.sd.6148.C1 nseq=19
Length = 3111
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 171 gatatgggaaacaag 185
|||||||||||||||
Sbjct: 1620 gatatgggaaacaag 1634
>PTA.sd.6021.C1 nseq=4
Length = 1923
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 73 aaaccataaaagttt 87
|||||||||||||||
Sbjct: 209 aaaccataaaagttt 195
>PTA.sd.5808.C2 nseq=2
Length = 1664
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 112 tgtacgaccaaatcc 126
|||||||||||||||
Sbjct: 1491 tgtacgaccaaatcc 1477
>PTA.sd.4803.C1 nseq=5
Length = 1652
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 171 gatatgggaaacaag 185
|||||||||||||||
Sbjct: 696 gatatgggaaacaag 710
>PTA.sd.4676.C1 nseq=19
Length = 1571
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 82 aagttttcaagaaaa 96
|||||||||||||||
Sbjct: 545 aagttttcaagaaaa 559
>PTA.sd.3456.C1 nseq=26
Length = 752
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 69 atacaaaccataaaa 83
|||||||||||||||
Sbjct: 14 atacaaaccataaaa 28
>PTA.sd.2418.C1 nseq=7
Length = 2850
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 245 gcttcaaagccacta 259
|||||||||||||||
Sbjct: 2351 gcttcaaagccacta 2337
>PTA.sd.10225.C1 nseq=5
Length = 2005
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 aaagttttcaagaaa 95
|||||||||||||||
Sbjct: 168 aaagttttcaagaaa 182
>accD.F
Length = 1467
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 74 aaccataaaagtttt 88
|||||||||||||||
Sbjct: 154 aaccataaaagtttt 140
>At5g61940.F
Length = 3285
Score = 30.2 bits (15), Expect = 8.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 165 gaccctgatatgggaaaca 183
|||||||||||| ||||||
Sbjct: 2455 gaccctgatatgcgaaaca 2473
>At5g34810.F
Length = 489
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 ctacaccaccaggat 221
|||||||||||||||
Sbjct: 112 ctacaccaccaggat 98
>At4g31230.F
Length = 1614
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 264 gagctttcgtttctg 278
|||||||||||||||
Sbjct: 1327 gagctttcgtttctg 1313
>At4g04130.F
Length = 2580
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 ctacaccaccaggat 221
|||||||||||||||
Sbjct: 2137 ctacaccaccaggat 2123
>At1g80520.F
Length = 579
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 274 ttctgaaacatggaa 288
|||||||||||||||
Sbjct: 563 ttctgaaacatggaa 549
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 292
length of database: 39,126,732
effective HSP length: 16
effective length of query: 276
effective length of database: 38,700,540
effective search space: 10681349040
effective search space used: 10681349040
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)