BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_06766
(292 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01450.F 579 e-165
PTA.sd.12755.C1 nseq=5 34 0.54
At2g35950.F PTA.sd.6471.singlet 32 2.1
PTA.sd.7970.C1 nseq=7 32 2.1
PTA.sd.6962.C1 nseq=13 32 2.1
PTA.sd.3868.C1 nseq=4 32 2.1
PTA.sd.3461.C1 nseq=4 32 2.1
PTA.sd.16577.C1 nseq=2 32 2.1
PTA.sd.13328.C1 nseq=11 32 2.1
PTA.sd.12834.C1 nseq=18 32 2.1
PTA.sd.1275.C1 nseq=4 32 2.1
PTA.sd.11204.C2 nseq=23 32 2.1
PTA.sd.11151.C1 nseq=40 32 2.1
At5g55420.F 32 2.1
At1g69430.F 32 2.1
>At1g01450.F
Length = 1413
Score = 579 bits (292), Expect = e-165
Identities = 292/292 (100%)
Strand = Plus / Plus
Query: 1 agtagaaacattagggccggggagagaccgctttttccatttaattcaccaaagttcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 agtagaaacattagggccggggagagaccgctttttccatttaattcaccaaagttcata 825
Query: 61 acaaacctgacaaaacgatgctggcatgctgatcccaatcagcgtccaactttctcatcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 acaaacctgacaaaacgatgctggcatgctgatcccaatcagcgtccaactttctcatcg 885
Query: 121 ataagcagaattctccggtatatcaaacggtttctagctttgaacccggaatgttacagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 ataagcagaattctccggtatatcaaacggtttctagctttgaacccggaatgttacagt 945
Query: 181 agtagccaacaagacccgtccattgcgcctactgtggattactgcgagatcgagacaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 agtagccaacaagacccgtccattgcgcctactgtggattactgcgagatcgagacaaag 1005
Query: 241 ctattgcagaagctttcttgggaatctacagagctaaccaaagtttcacagg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 ctattgcagaagctttcttgggaatctacagagctaaccaaagtttcacagg 1057
>PTA.sd.12755.C1 nseq=5
Length = 2457
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 270 agagctaaccaaagttt 286
|||||||||||||||||
Sbjct: 1271 agagctaaccaaagttt 1287
>At2g35950.F PTA.sd.6471.singlet
Length = 411
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 99 tcagcgtccaactttc 114
||||||||||||||||
Sbjct: 321 tcagcgtccaactttc 336
>PTA.sd.7970.C1 nseq=7
Length = 1326
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 232 gagacaaagctattgc 247
||||||||||||||||
Sbjct: 370 gagacaaagctattgc 355
>PTA.sd.6962.C1 nseq=13
Length = 1526
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 249 gaagctttcttgggaa 264
||||||||||||||||
Sbjct: 725 gaagctttcttgggaa 740
>PTA.sd.3868.C1 nseq=4
Length = 2010
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 252 gctttcttgggaatct 267
||||||||||||||||
Sbjct: 1437 gctttcttgggaatct 1422
>PTA.sd.3461.C1 nseq=4
Length = 2696
Score = 32.2 bits (16), Expect = 2.1
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 99 tcagcgtccaactttctcatcgat 122
|||||||||||| ||||| |||||
Sbjct: 1764 tcagcgtccaacattctcttcgat 1787
>PTA.sd.16577.C1 nseq=2
Length = 902
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 241 ctattgcagaagcttt 256
||||||||||||||||
Sbjct: 822 ctattgcagaagcttt 837
>PTA.sd.13328.C1 nseq=11
Length = 2458
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 124 agcagaattctccggt 139
||||||||||||||||
Sbjct: 307 agcagaattctccggt 292
>PTA.sd.12834.C1 nseq=18
Length = 1664
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 251 agctttcttgggaatc 266
||||||||||||||||
Sbjct: 186 agctttcttgggaatc 171
>PTA.sd.1275.C1 nseq=4
Length = 935
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 268 acagagctaaccaaag 283
||||||||||||||||
Sbjct: 538 acagagctaaccaaag 553
>PTA.sd.11204.C2 nseq=23
Length = 2086
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 129 aattctccggtatatc 144
||||||||||||||||
Sbjct: 688 aattctccggtatatc 673
>PTA.sd.11151.C1 nseq=40
Length = 1812
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 248 agaagctttcttggga 263
||||||||||||||||
Sbjct: 243 agaagctttcttggga 228
>At5g55420.F
Length = 339
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 227 agatcgagacaaagct 242
||||||||||||||||
Sbjct: 324 agatcgagacaaagct 309
>At1g69430.F
Length = 1053
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 127 agaattctccggtata 142
||||||||||||||||
Sbjct: 154 agaattctccggtata 169
>At1g09080.F
Length = 2037
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 249 gaagctttcttgggaa 264
||||||||||||||||
Sbjct: 532 gaagctttcttgggaa 547
>At4g20850.F PTA.sd.12301.singlet
Length = 4191
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 254 tttcttgggaatcta 268
|||||||||||||||
Sbjct: 3511 tttcttgggaatcta 3525
>At4g14650.F PTA.sd.11851.singlet
Length = 1935
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 149 ggtttctagctttga 163
|||||||||||||||
Sbjct: 210 ggtttctagctttga 196
>At1g73970.F PTA.sd.4174.singlet
Length = 2100
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 269 cagagctaaccaaag 283
|||||||||||||||
Sbjct: 208 cagagctaaccaaag 194
>At1g69220.F PTA.sd.3820.singlet
Length = 2511
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 225 cgagatcgagacaaa 239
|||||||||||||||
Sbjct: 106 cgagatcgagacaaa 120
>At1g59124.F PTA.sd.3155.singlet
Length = 3468
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 243 attgcagaagctttc 257
|||||||||||||||
Sbjct: 2661 attgcagaagctttc 2675
>PTA.sd.8336.C1 nseq=32
Length = 2284
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 243 attgcagaagctttc 257
|||||||||||||||
Sbjct: 502 attgcagaagctttc 516
>PTA.sd.7782.C1 nseq=10
Length = 1416
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 175 tacagtagtagccaa 189
|||||||||||||||
Sbjct: 1294 tacagtagtagccaa 1308
>PTA.sd.7200.C1 nseq=26
Length = 2596
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 taacaaacctgacaa 73
|||||||||||||||
Sbjct: 700 taacaaacctgacaa 714
>PTA.sd.6539.C1 nseq=87
Length = 1682
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 245 tgcagaagctttctt 259
|||||||||||||||
Sbjct: 1439 tgcagaagctttctt 1425
>PTA.sd.4566.C1 nseq=10
Length = 979
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 243 attgcagaagctttc 257
|||||||||||||||
Sbjct: 567 attgcagaagctttc 553
>PTA.sd.3932.C1 nseq=9
Length = 1143
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 210 tactgtggattactg 224
|||||||||||||||
Sbjct: 914 tactgtggattactg 900
>PTA.sd.3153.C1 nseq=2
Length = 1312
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 243 attgcagaagctttc 257
|||||||||||||||
Sbjct: 643 attgcagaagctttc 657
>PTA.sd.17299.C1 nseq=2
Length = 513
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 63 aaacctgacaaaacg 77
|||||||||||||||
Sbjct: 283 aaacctgacaaaacg 297
>PTA.sd.16477.C1 nseq=5
Length = 3202
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 250 aagctttcttgggaa 264
|||||||||||||||
Sbjct: 3133 aagctttcttgggaa 3119
>PTA.sd.15526.C1 nseq=14
Length = 794
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 123 aagcagaattctccg 137
|||||||||||||||
Sbjct: 568 aagcagaattctccg 582
>PTA.sd.14764.C1 nseq=48
Length = 1236
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 245 tgcagaagctttctt 259
|||||||||||||||
Sbjct: 1087 tgcagaagctttctt 1073
>PTA.sd.13737.C1 nseq=20
Length = 2260
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 239 agctattgcagaagc 253
|||||||||||||||
Sbjct: 2147 agctattgcagaagc 2161
>PTA.sd.13438.C1 nseq=2
Length = 787
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 274 ctaaccaaagtttca 288
|||||||||||||||
Sbjct: 492 ctaaccaaagtttca 478
>PTA.sd.1017.C1 nseq=4
Length = 919
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 269 cagagctaaccaaag 283
|||||||||||||||
Sbjct: 627 cagagctaaccaaag 613
>PTA.sd.10120.C1 nseq=7
Length = 2512
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 259 tgggaatctacagag 273
|||||||||||||||
Sbjct: 731 tgggaatctacagag 745
>At5g40680.F
Length = 1248
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 247 cagaagctttcttgg 261
|||||||||||||||
Sbjct: 78 cagaagctttcttgg 64
>At3g28620.F
Length = 636
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 216 ggattactgcgagat 230
|||||||||||||||
Sbjct: 513 ggattactgcgagat 527
>At1g74150.F
Length = 1659
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 179 gtagtagccaacaag 193
|||||||||||||||
Sbjct: 1349 gtagtagccaacaag 1363
>At1g59218.F
Length = 3150
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 243 attgcagaagctttc 257
|||||||||||||||
Sbjct: 2481 attgcagaagctttc 2495
>At1g53600.F
Length = 2520
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 131 ttctccggtatatca 145
|||||||||||||||
Sbjct: 425 ttctccggtatatca 411
>At1g31100.F
Length = 3273
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 181 agtagccaacaagac 195
|||||||||||||||
Sbjct: 1464 agtagccaacaagac 1450
>At1g10385.F
Length = 1983
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 245 tgcagaagctttctt 259
|||||||||||||||
Sbjct: 210 tgcagaagctttctt 196
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 292
length of database: 39,126,732
effective HSP length: 16
effective length of query: 276
effective length of database: 38,700,540
effective search space: 10681349040
effective search space used: 10681349040
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)