BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_06686
(298 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g25290.F 591 e-168
PTA.sd.13205.C1 nseq=2 133 8e-31
At3g60070.F PTA.sd.10786.singlet 34 0.56
PTA.sd.4758.C1 nseq=25 34 0.56
PTA.sd.16356.C1 nseq=15 34 0.56
PTA.sd.1405.C1 nseq=61 34 0.56
PTA.sd.8352.C1 nseq=27 32 2.2
PTA.sd.6770.C1 nseq=6 32 2.2
PTA.sd.6475.C1 nseq=7 32 2.2
PTA.sd.1726.C1 nseq=11 32 2.2
PTA.sd.11356.C1 nseq=5 32 2.2
PTA.sd.11231.C1 nseq=5 32 2.2
At5g53270.F 32 2.2
At1g18750.F 32 2.2
At3g05040.F PTA.sd.7776.singlet 30 8.7
>At2g25290.F
Length = 2094
Score = 591 bits (298), Expect = e-168
Identities = 298/298 (100%)
Strand = Plus / Plus
Query: 1 atgtccaaggcaagaaggcagatctattttcccgaggatggttcaagggaaactatacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1432 atgtccaaggcaagaaggcagatctattttcccgaggatggttcaagggaaactatacta 1491
Query: 61 gagaaagttgaggccggatttgagtgggcgaagaacgagtacaacaaagctgcagaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1492 gagaaagttgaggccggatttgagtgggcgaagaacgagtacaacaaagctgcagaaaag 1551
Query: 121 tacgaaggcgcggttaaaattaaatctgatttctatgaagctcttctagcactaggccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1552 tacgaaggcgcggttaaaattaaatctgatttctatgaagctcttctagcactaggccaa 1611
Query: 181 caacagtttgagcaggctaagctttgctggtatcatgcattgagtggcgaggtagatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1612 caacagtttgagcaggctaagctttgctggtatcatgcattgagtggcgaggtagatata 1671
Query: 241 gaaagcgatgcttctcaggatgttctaaagctctataacaaagctgaggagagcatgg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1672 gaaagcgatgcttctcaggatgttctaaagctctataacaaagctgaggagagcatgg 1729
>PTA.sd.13205.C1 nseq=2
Length = 2438
Score = 133 bits (67), Expect = 8e-31
Identities = 232/287 (80%)
Strand = Plus / Plus
Query: 1 atgtccaaggcaagaaggcagatctattttcccgaggatggttcaagggaaactatacta 60
|||||||||||||| | ||| ||| | | |||||||||| || || ||| ||||| ||
Sbjct: 1545 atgtccaaggcaaggaagcaagtctgtatacccgaggatgcctctagagaagctataata 1604
Query: 61 gagaaagttgaggccggatttgagtgggcgaagaacgagtacaacaaagctgcagaaaag 120
|| ||||||||| | ||||| |||| | ||||||||||||||||||||||||| ||
Sbjct: 1605 gaagcagttgaggctgcatttgtgtggacacagaacgagtacaacaaagctgcagagaaa 1664
Query: 121 tacgaaggcgcggttaaaattaaatctgatttctatgaagctcttctagcactaggccaa 180
|| |||| || |||| ||||| ||||||| || ||||||||||||||||| || |||
Sbjct: 1665 tatgaagaagcaattaaggttaaacctgatttttacgaagctcttctagcacttgggcaa 1724
Query: 181 caacagtttgagcaggctaagctttgctggtatcatgcattgagtggcgaggtagatata 240
| |||||||| || || ||||||||||||||||||||| | | || ||||||| ||
Sbjct: 1725 gagcagtttgaacatgcaaagctttgctggtatcatgcactcaaaagcaaggtagaccta 1784
Query: 241 gaaagcgatgcttctcaggatgttctaaagctctataacaaagctga 287
||||| || |||||||| || || || ||||||||||||||||||||
Sbjct: 1785 gaaagtgaggcttctcaagaggtcctgaagctctataacaaagctga 1831
>At3g60070.F PTA.sd.10786.singlet
Length = 1314
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 100 tacaacaaagctgcaga 116
|||||||||||||||||
Sbjct: 828 tacaacaaagctgcaga 812
>PTA.sd.4758.C1 nseq=25
Length = 2132
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 145 tctgatttctatgaagc 161
|||||||||||||||||
Sbjct: 1001 tctgatttctatgaagc 1017
>PTA.sd.16356.C1 nseq=15
Length = 3345
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 139 attaaatctgatttcta 155
|||||||||||||||||
Sbjct: 1371 attaaatctgatttcta 1355
>PTA.sd.1405.C1 nseq=61
Length = 1306
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 156 tgaagctcttctagcactagg 176
|||||||||||||||| ||||
Sbjct: 843 tgaagctcttctagcaatagg 823
>PTA.sd.8352.C1 nseq=27
Length = 1507
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 249 tgcttctcaggatgtt 264
||||||||||||||||
Sbjct: 437 tgcttctcaggatgtt 452
>PTA.sd.6770.C1 nseq=6
Length = 586
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 275 ataacaaagctgagga 290
||||||||||||||||
Sbjct: 434 ataacaaagctgagga 449
>PTA.sd.6475.C1 nseq=7
Length = 1844
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 103 aacaaagctgcagaaa 118
||||||||||||||||
Sbjct: 707 aacaaagctgcagaaa 722
>PTA.sd.1726.C1 nseq=11
Length = 992
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 150 tttctatgaagctctt 165
||||||||||||||||
Sbjct: 852 tttctatgaagctctt 867
>PTA.sd.11356.C1 nseq=5
Length = 2710
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 144 atctgatttctatgaa 159
||||||||||||||||
Sbjct: 2405 atctgatttctatgaa 2420
>PTA.sd.11231.C1 nseq=5
Length = 1734
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 278 acaaagctgaggagag 293
||||||||||||||||
Sbjct: 486 acaaagctgaggagag 501
>At5g53270.F
Length = 480
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 235 gatatagaaagcgatg 250
||||||||||||||||
Sbjct: 199 gatatagaaagcgatg 214
>At1g18750.F
Length = 1215
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 180 acaacagtttgagcag 195
||||||||||||||||
Sbjct: 822 acaacagtttgagcag 837
>At3g05040.F PTA.sd.7776.singlet
Length = 1569
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 caaagctgcagaaaa 119
|||||||||||||||
Sbjct: 351 caaagctgcagaaaa 365
>PTA.sd.9811.C1 nseq=5
Length = 4174
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 182 aacagtttgagcagg 196
|||||||||||||||
Sbjct: 612 aacagtttgagcagg 598
>PTA.sd.9213.C1 nseq=4
Length = 4643
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 tagagaaagttgagg 73
|||||||||||||||
Sbjct: 3389 tagagaaagttgagg 3403
>PTA.sd.8577.C1 nseq=19
Length = 1411
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 254 ctcaggatgttctaa 268
|||||||||||||||
Sbjct: 337 ctcaggatgttctaa 323
>PTA.sd.8464.C1 nseq=27
Length = 2575
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 54 tatactagagaaagttgag 72
||||| |||||||||||||
Sbjct: 1170 tataccagagaaagttgag 1152
>PTA.sd.8186.C1 nseq=2
Length = 1813
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 33 cgaggatggttcaag 47
|||||||||||||||
Sbjct: 1461 cgaggatggttcaag 1475
>PTA.sd.7952.C1 nseq=12
Length = 5996
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 73 gccggatttgagtgg 87
|||||||||||||||
Sbjct: 5084 gccggatttgagtgg 5098
>PTA.sd.5779.C1 nseq=21
Length = 1928
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 156 tgaagctcttctagcacta 174
||||||||||| |||||||
Sbjct: 1466 tgaagctcttcaagcacta 1448
>PTA.sd.4503.C1 nseq=2
Length = 1197
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 ctatgaagctcttct 167
|||||||||||||||
Sbjct: 326 ctatgaagctcttct 312
>PTA.sd.3844.C1 nseq=2
Length = 3214
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 18 gcagatctattttcc 32
|||||||||||||||
Sbjct: 2672 gcagatctattttcc 2658
>PTA.sd.2975.C1 nseq=3
Length = 2800
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 34 gaggatggttcaagggaaa 52
||||| |||||||||||||
Sbjct: 2037 gaggagggttcaagggaaa 2055
>PTA.sd.1960.C1 nseq=6
Length = 3687
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 108 agctgcagaaaagta 122
|||||||||||||||
Sbjct: 3091 agctgcagaaaagta 3077
>PTA.sd.18011.C1 nseq=9
Length = 2228
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 74 ccggatttgagtggg 88
|||||||||||||||
Sbjct: 1177 ccggatttgagtggg 1163
>PTA.sd.17244.C1 nseq=19
Length = 1673
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 32 ccgaggatggttcaaggga 50
|||||||||||| ||||||
Sbjct: 1250 ccgaggatggttgaaggga 1232
>PTA.sd.16876.C1 nseq=6
Length = 2149
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 136 aaaattaaatctgatttct 154
||||| |||||||||||||
Sbjct: 64 aaaatcaaatctgatttct 82
>PTA.sd.16647.C1 nseq=5
Length = 1948
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 220 ttgagtggcgaggta 234
|||||||||||||||
Sbjct: 570 ttgagtggcgaggta 584
>PTA.sd.13191.C1 nseq=4
Length = 1973
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 156 tgaagctcttctagc 170
|||||||||||||||
Sbjct: 1170 tgaagctcttctagc 1156
>PTA.sd.1200.C1 nseq=10
Length = 1880
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 63 gaaagttgaggccgg 77
|||||||||||||||
Sbjct: 427 gaaagttgaggccgg 413
>PTA.sd.11328.C1 nseq=4
Length = 5812
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 264 tctaaagctctataa 278
|||||||||||||||
Sbjct: 5781 tctaaagctctataa 5767
>PTA.sd.10947.C1 nseq=6
Length = 1852
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 272 tctataacaaagctgagga 290
||||||||||| |||||||
Sbjct: 1324 tctataacaaaactgagga 1342
>PTA.sd.10281.C1 nseq=4
Length = 1686
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 58 ctagagaaagttgag 72
|||||||||||||||
Sbjct: 1089 ctagagaaagttgag 1103
>PTA.sd.10254.C1 nseq=7
Length = 2057
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 37 gatggttcaagggaa 51
|||||||||||||||
Sbjct: 562 gatggttcaagggaa 576
>PTA.sd.10164.C1 nseq=6
Length = 928
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 142 aaatctgatttctat 156
|||||||||||||||
Sbjct: 711 aaatctgatttctat 697
>At5g35600.F
Length = 1230
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 56 tactagagaaagttg 70
|||||||||||||||
Sbjct: 1128 tactagagaaagttg 1114
>At5g04630.F
Length = 1530
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 33 cgaggatggttcaag 47
|||||||||||||||
Sbjct: 1403 cgaggatggttcaag 1417
>At5g04520.F
Length = 876
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 56 tactagagaaagttg 70
|||||||||||||||
Sbjct: 599 tactagagaaagttg 613
>At4g21360.F
Length = 3927
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 258 ggatgttctaaagct 272
|||||||||||||||
Sbjct: 3903 ggatgttctaaagct 3917
>At3g57440.F
Length = 723
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 200 agctttgctggtatc 214
|||||||||||||||
Sbjct: 642 agctttgctggtatc 628
>At3g53290.F
Length = 1224
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 58 ctagagaaagttgag 72
|||||||||||||||
Sbjct: 760 ctagagaaagttgag 774
>At3g44250.F
Length = 1500
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 58 ctagagaaagttgag 72
|||||||||||||||
Sbjct: 1036 ctagagaaagttgag 1050
>At3g31910.F
Length = 1200
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 161 ctcttctagcactag 175
|||||||||||||||
Sbjct: 409 ctcttctagcactag 395
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 298
length of database: 39,126,732
effective HSP length: 16
effective length of query: 282
effective length of database: 38,700,540
effective search space: 10913552280
effective search space used: 10913552280
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)