BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_06679
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g08260.F 589 e-168
At2g27120.F 339 7e-93
PTA.sd.17385.C1 nseq=3 34 0.55
PTA.sd.15947.C1 nseq=7 34 0.55
PTA.sd.13244.C1 nseq=9 34 0.55
At1g72240.F PTA.sd.4034.singlet 32 2.2
PTA.sd.8002.C1 nseq=9 32 2.2
PTA.sd.6870.C1 nseq=3 32 2.2
PTA.sd.5666.C1 nseq=4 32 2.2
PTA.sd.12149.C1 nseq=2 32 2.2
PTA.sd.11372.C1 nseq=10 32 2.2
PTA.sd.10895.C1 nseq=2 32 2.2
PTA.sd.10548.C1 nseq=14 32 2.2
At3g24630.F 32 2.2
PTA.sd.9564.C1 nseq=18 30 8.6
>At1g08260.F
Length = 6816
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 gcggatacacaatgtgggaagatatatgacagagagcagatggagagtagccttctagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6520 gcggatacacaatgtgggaagatatatgacagagagcagatggagagtagccttctagag 6579
Query: 61 atggtgagacagagagaaagaatgtaccatatgcaggatgtagtgtgcattaggtgcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6580 atggtgagacagagagaaagaatgtaccatatgcaggatgtagtgtgcattaggtgcaat 6639
Query: 121 caggtgaaagcggctcatttgacagagcagtgtgagtgttctggttcctttagatgcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6640 caggtgaaagcggctcatttgacagagcagtgtgagtgttctggttcctttagatgcaag 6699
Query: 181 gagagtgggtcagagttcagcaagaggatggagatattcatggatatagcaaagcgccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6700 gagagtgggtcagagttcagcaagaggatggagatattcatggatatagcaaagcgccag 6759
Query: 241 aagtttagactgttagaagaatacatctcttggatcatatatggccctagctattaa 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6760 aagtttagactgttagaagaatacatctcttggatcatatatggccctagctattaa 6816
>At2g27120.F
Length = 6465
Score = 339 bits (171), Expect = 7e-93
Identities = 249/275 (90%)
Strand = Plus / Plus
Query: 1 gcggatacacaatgtgggaagatatatgacagagagcagatggagagtagccttctagag 60
|||||| | ||||||| |||||||||||||| ||||||||| ||||||||| || | ||
Sbjct: 6169 gcggatccgcaatgtgtgaagatatatgacaaagagcagatagagagtagcattatccag 6228
Query: 61 atggtgagacagagagaaagaatgtaccatatgcaggatgtagtgtgcattaggtgcaat 120
|||||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||||
Sbjct: 6229 atggtgagacagagggaaagaatgtaccagttgcaggatctagtgtgcaataggtgcaat 6288
Query: 121 caggtgaaagcggctcatttgacagagcagtgtgagtgttctggttcctttagatgcaag 180
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6289 caggtgaaagccgctcatttgacagagcagtgtgagtgttctggatcctttagatgcaag 6348
Query: 181 gagagtgggtcagagttcagcaagaggatggagatattcatggatatagcaaagcgccag 240
|||||||| ||||| ||| ||||||||| ||||| ||| ||||||||||||||||||||
Sbjct: 6349 gagagtggttcagatttccacaagaggattgagattttcttggatatagcaaagcgccag 6408
Query: 241 aagtttagactgttagaagaatacatctcttggat 275
|||||||||||| ||||||||| |||||| |||||
Sbjct: 6409 aagtttagactgctagaagaatgcatctcctggat 6443
>PTA.sd.17385.C1 nseq=3
Length = 1985
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 211 gagatattcatggatat 227
|||||||||||||||||
Sbjct: 771 gagatattcatggatat 787
>PTA.sd.15947.C1 nseq=7
Length = 1225
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 159 ttctggttcctttagat 175
|||||||||||||||||
Sbjct: 839 ttctggttcctttagat 823
>PTA.sd.13244.C1 nseq=9
Length = 1437
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 66 gagacagagagaaagaatgta 86
|||||||||||||||| ||||
Sbjct: 91 gagacagagagaaagactgta 111
>At1g72240.F PTA.sd.4034.singlet
Length = 402
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 63 ggtgagacagagagaa 78
||||||||||||||||
Sbjct: 165 ggtgagacagagagaa 150
>PTA.sd.8002.C1 nseq=9
Length = 2680
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 14 gtgggaagatatatga 29
||||||||||||||||
Sbjct: 2314 gtgggaagatatatga 2329
>PTA.sd.6870.C1 nseq=3
Length = 1271
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 66 gagacagagagaaaga 81
||||||||||||||||
Sbjct: 814 gagacagagagaaaga 829
>PTA.sd.5666.C1 nseq=4
Length = 1135
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 59 agatggtgagacagag 74
||||||||||||||||
Sbjct: 105 agatggtgagacagag 90
>PTA.sd.12149.C1 nseq=2
Length = 487
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 251 tgttagaagaatacatctct 270
|||||||||||| |||||||
Sbjct: 212 tgttagaagaatccatctct 193
>PTA.sd.11372.C1 nseq=10
Length = 2552
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 69 acagagagaaagaatg 84
||||||||||||||||
Sbjct: 268 acagagagaaagaatg 253
>PTA.sd.10895.C1 nseq=2
Length = 1467
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 260 aatacatctcttggat 275
||||||||||||||||
Sbjct: 775 aatacatctcttggat 760
>PTA.sd.10548.C1 nseq=14
Length = 1540
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 66 gagacagagagaaaga 81
||||||||||||||||
Sbjct: 955 gagacagagagaaaga 970
>At3g24630.F
Length = 2175
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 263 acatctcttggatcat 278
||||||||||||||||
Sbjct: 68 acatctcttggatcat 53
>PTA.sd.9564.C1 nseq=18
Length = 4239
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 66 gagacagagagaaagaatg 84
|||| ||||||||||||||
Sbjct: 150 gagagagagagaaagaatg 132
>PTA.sd.9259.C1 nseq=41
Length = 2377
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 25 tatgacagagagcagatgg 43
|||||||||||| ||||||
Sbjct: 1711 tatgacagagaggagatgg 1729
>PTA.sd.8936.C1 nseq=8
Length = 1818
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 atggtgagacagaga 75
|||||||||||||||
Sbjct: 673 atggtgagacagaga 687
>PTA.sd.7798.C1 nseq=2
Length = 1812
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 gagacagagagaaag 80
|||||||||||||||
Sbjct: 1366 gagacagagagaaag 1380
>PTA.sd.765.C1 nseq=3
Length = 1545
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 66 gagacagagagaaagaatg 84
|||| ||||||||||||||
Sbjct: 84 gagagagagagaaagaatg 66
>PTA.sd.7041.C1 nseq=9
Length = 1855
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 164 gttcctttagatgca 178
|||||||||||||||
Sbjct: 555 gttcctttagatgca 569
>PTA.sd.6824.C1 nseq=15
Length = 2458
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 255 agaagaatacatctc 269
|||||||||||||||
Sbjct: 175 agaagaatacatctc 161
>PTA.sd.5680.C1 nseq=5
Length = 739
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 gagacagagagaaag 80
|||||||||||||||
Sbjct: 515 gagacagagagaaag 529
>PTA.sd.5053.C1 nseq=12
Length = 687
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 88 catatgcaggatgta 102
|||||||||||||||
Sbjct: 597 catatgcaggatgta 611
>PTA.sd.3850.C1 nseq=23
Length = 665
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 64 gtgagacagagagaa 78
|||||||||||||||
Sbjct: 42 gtgagacagagagaa 56
>PTA.sd.3523.C1 nseq=8
Length = 2264
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 55 ctagagatggtgaga 69
|||||||||||||||
Sbjct: 554 ctagagatggtgaga 568
>PTA.sd.3394.C1 nseq=3
Length = 2612
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 267 ctcttggatcatata 281
|||||||||||||||
Sbjct: 1402 ctcttggatcatata 1416
>PTA.sd.3007.C1 nseq=6
Length = 2780
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 124 gtgaaagcggctcat 138
|||||||||||||||
Sbjct: 1807 gtgaaagcggctcat 1821
>PTA.sd.283.C1 nseq=2
Length = 1451
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 201 caagaggatggagat 215
|||||||||||||||
Sbjct: 32 caagaggatggagat 18
>PTA.sd.276.C1 nseq=42
Length = 1417
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 67 agacagagagaaaga 81
|||||||||||||||
Sbjct: 1231 agacagagagaaaga 1245
>PTA.sd.16990.C1 nseq=4
Length = 1246
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 gagacagagagaaag 80
|||||||||||||||
Sbjct: 5 gagacagagagaaag 19
>PTA.sd.14485.C1 nseq=9
Length = 1233
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 68 gacagagagaaagaa 82
|||||||||||||||
Sbjct: 373 gacagagagaaagaa 387
>PTA.sd.13869.C1 nseq=10
Length = 2727
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 tgagtgttctggttc 167
|||||||||||||||
Sbjct: 1514 tgagtgttctggttc 1500
>PTA.sd.13443.C1 nseq=8
Length = 2265
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 208 atggagatattcatg 222
|||||||||||||||
Sbjct: 395 atggagatattcatg 409
>PTA.sd.13176.C1 nseq=8
Length = 1661
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 208 atggagatattcatg 222
|||||||||||||||
Sbjct: 1441 atggagatattcatg 1427
>PTA.sd.12694.C1 nseq=12
Length = 853
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 57 agagatggtgagacagagagaaa 79
||||||||||| || ||||||||
Sbjct: 88 agagatggtgaaactgagagaaa 110
>PTA.sd.1267.C1 nseq=10
Length = 1331
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 255 agaagaatacatctc 269
|||||||||||||||
Sbjct: 544 agaagaatacatctc 530
>PTA.sd.12666.C1 nseq=11
Length = 2646
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 181 gagagtgggtcagag 195
|||||||||||||||
Sbjct: 1253 gagagtgggtcagag 1267
>PTA.sd.1231.C1 nseq=6
Length = 5649
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 58 gagatggtgagacagagag 76
|||||| ||||||||||||
Sbjct: 5075 gagatgatgagacagagag 5093
>PTA.sd.11368.C1 nseq=9
Length = 1317
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 255 agaagaatacatctc 269
|||||||||||||||
Sbjct: 591 agaagaatacatctc 577
>At5g11470.F
Length = 2076
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 168 ctttagatgcaagga 182
|||||||||||||||
Sbjct: 1403 ctttagatgcaagga 1417
>At5g11370.F
Length = 936
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 199 agcaagaggatggag 213
|||||||||||||||
Sbjct: 10 agcaagaggatggag 24
>At4g14480.F
Length = 1464
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 52 cttctagagatggtg 66
|||||||||||||||
Sbjct: 1375 cttctagagatggtg 1389
>At3g42910.F
Length = 1950
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 115 tgcaatcaggtgaaa 129
|||||||||||||||
Sbjct: 1873 tgcaatcaggtgaaa 1859
>At2g28180.F
Length = 2469
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 accatatgcaggatg 100
|||||||||||||||
Sbjct: 1772 accatatgcaggatg 1786
>At2g14040.F
Length = 2526
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 atacacaatgtggga 19
|||||||||||||||
Sbjct: 1088 atacacaatgtggga 1074
>At2g07750.F
Length = 2538
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 267 ctcttggatcatata 281
|||||||||||||||
Sbjct: 1543 ctcttggatcatata 1557
>At2g04620.F
Length = 903
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 38 agatggagagtagcc 52
|||||||||||||||
Sbjct: 791 agatggagagtagcc 777
>At1g47300.F
Length = 921
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 254 tagaagaatacatct 268
|||||||||||||||
Sbjct: 316 tagaagaatacatct 302
>At1g23690.F
Length = 822
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 17 ggaagatatatgacagaga 35
||||||||||||| |||||
Sbjct: 514 ggaagatatatgaaagaga 532
>At1g04150.F
Length = 3039
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 239 agaagtttagactgttagaagaa 261
|||||||| |||||||||||||
Sbjct: 280 agaagtttctactgttagaagaa 258
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)